Wall clock time and date at job start Tue Mar 31 2020 22:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47186 * 2 1 4 4 H 1.09003 * 109.51658 * 304.89653 * 3 2 1 5 5 C 1.52885 * 109.58299 * 184.88367 * 3 2 1 6 6 N 1.47150 * 108.60657 * 187.92624 * 5 3 2 7 7 S 1.65605 * 120.97914 * 230.49703 * 6 5 3 8 8 O 1.42104 * 106.40197 * 148.42296 * 7 6 5 9 9 O 1.42096 * 106.40082 * 15.50401 * 7 6 5 10 10 C 1.76199 * 107.21831 * 261.96131 * 7 6 5 11 11 C 1.38656 * 119.87272 * 90.00304 * 10 7 6 12 12 C 1.38618 * 120.50199 * 179.97438 * 11 10 7 13 13 C 1.37642 * 120.24270 * 359.97438 * 12 11 10 14 14 C 1.40690 * 119.74553 * 0.02562 * 13 12 11 15 15 C 1.41403 * 120.23950 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99338 * 179.61366 * 15 14 13 17 17 C 1.39940 * 120.00208 * 359.60843 * 15 14 13 18 18 N 1.30827 * 120.00108 * 218.77602 * 17 15 14 19 19 Si 1.86798 * 119.99883 * 38.50420 * 17 15 14 20 20 H 1.48501 * 109.46916 * 263.84858 * 19 17 15 21 21 H 1.48497 * 109.47073 * 23.84748 * 19 17 15 22 22 H 1.48503 * 109.47001 * 143.85112 * 19 17 15 23 23 C 1.37594 * 119.87952 * 270.32479 * 10 7 6 24 24 C 1.47144 * 118.04053 * 50.22525 * 6 5 3 25 25 H 1.09003 * 109.68697 * 69.47337 * 24 6 5 26 26 C 1.52994 * 109.68559 * 189.99380 * 24 6 5 27 27 C 1.53300 * 108.38685 * 309.71679 * 24 6 5 28 28 O 1.42960 * 109.22038 * 52.29644 * 27 24 6 29 29 H 1.08992 * 109.47051 * 300.00067 * 1 2 3 30 30 H 1.08998 * 109.47147 * 59.99854 * 1 2 3 31 31 H 1.08994 * 109.47319 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46677 * 240.00098 * 2 1 3 33 33 H 1.08998 * 109.47147 * 120.00146 * 2 1 3 34 34 H 1.08995 * 109.62016 * 68.10326 * 5 3 2 35 35 H 1.09005 * 109.52011 * 307.68277 * 5 3 2 36 36 H 1.07999 * 119.75065 * 0.02562 * 11 10 7 37 37 H 1.07997 * 119.87609 * 180.02562 * 12 11 10 38 38 H 1.08000 * 120.12012 * 180.02562 * 13 12 11 39 39 H 0.97002 * 119.99709 * 354.71120 * 18 17 15 40 40 H 1.08001 * 120.12422 * 359.97384 * 23 10 7 41 41 H 1.09001 * 109.47198 * 62.77186 * 26 24 6 42 42 H 1.09005 * 109.47659 * 182.77589 * 26 24 6 43 43 H 1.09004 * 109.47156 * 302.77269 * 26 24 6 44 44 H 1.08993 * 109.51728 * 172.22616 * 27 24 6 45 45 H 1.09006 * 109.50873 * 292.33125 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6073 1.9817 -0.8427 5 6 3.5639 1.4471 -0.1226 6 7 4.0463 2.8238 0.0707 7 16 5.0887 3.5216 -1.0104 8 8 4.7918 4.9112 -1.0145 9 8 5.0524 2.7156 -2.1802 10 6 6.7130 3.3619 -0.3464 11 6 7.4750 2.2431 -0.6469 12 6 8.7545 2.1044 -0.1320 13 6 9.2827 3.0786 0.6843 14 6 8.5185 4.2181 0.9959 15 6 9.0511 5.2256 1.8331 16 1 8.4633 6.1016 2.0646 17 6 10.3395 5.0876 2.3615 18 7 10.5880 5.4700 3.5877 19 14 11.7026 4.3503 1.3187 20 1 11.8321 2.9029 1.6245 21 1 11.3754 4.5250 -0.1192 22 1 12.9841 5.0368 1.6218 23 6 7.2179 4.3446 0.4737 24 6 3.5703 3.5643 1.2498 25 1 4.0002 3.1318 2.1533 26 6 3.9813 5.0336 1.1361 27 6 2.0419 3.4584 1.3028 28 8 1.6624 2.0825 1.2213 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.8526 1.0926 -1.1121 35 1 3.9928 0.7974 0.6404 36 1 7.0689 1.4744 -1.2876 37 1 9.3393 1.2290 -0.3729 38 1 10.2800 2.9687 1.0841 39 1 9.9007 5.9190 4.1044 40 1 6.6208 5.2128 0.7103 41 1 3.5024 5.4784 0.2637 42 1 3.6702 5.5685 2.0335 43 1 5.0640 5.1009 1.0300 44 1 1.6798 3.8811 2.2399 45 1 1.6098 4.0062 0.4653 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593643028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:59 Heat of formation + Delta-G solvation = -89.551837 kcal Electronic energy + Delta-G solvation = -28689.688194 eV Core-core repulsion = 24799.355269 eV Total energy + Delta-G solvation = -3890.332925 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.67661 -37.90758 -37.17097 -35.59987 -35.24057 -34.17084 -34.10375 -31.46571 -30.60041 -30.16291 -27.65614 -26.26890 -25.11401 -23.48901 -22.50401 -21.98554 -20.96591 -20.80488 -19.09961 -18.17594 -16.98615 -16.84149 -16.62537 -16.18257 -15.73935 -15.29187 -14.89057 -14.70442 -14.44771 -14.13788 -13.99679 -13.84311 -13.51022 -13.37239 -12.95228 -12.68761 -12.43275 -12.13088 -12.02271 -11.97832 -11.94407 -11.78384 -11.70065 -11.55518 -11.25462 -11.17473 -11.12282 -10.95012 -10.76061 -10.64128 -10.41877 -10.16677 -10.10183 -9.90574 -9.34411 -9.07617 -8.74847 -8.28338 -8.05125 -7.72787 -4.74395 0.81435 1.96003 2.52874 2.97800 3.16937 3.24210 3.35680 3.61546 3.74856 4.07458 4.17724 4.46228 4.68809 4.71682 4.83813 4.93861 4.97354 5.12128 5.14966 5.19511 5.33289 5.38714 5.50812 5.57524 5.63509 5.71829 5.77073 5.79419 5.83461 5.93091 6.00259 6.11295 6.14328 6.15854 6.19397 6.45711 6.54215 6.69245 6.79902 6.97021 7.07736 7.15658 7.24222 7.40966 7.49323 7.64875 8.12596 8.28490 8.47138 9.57466 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018910 B = 0.003536 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.326982 B = 7915.946153 C = 8258.840884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.080 3.920 4 H 0.062 0.938 5 C 0.089 3.911 6 N -0.999 5.999 7 S 2.684 3.316 8 O -0.963 6.963 9 O -0.973 6.973 10 C -0.609 4.609 11 C -0.184 4.184 12 C -0.077 4.077 13 C -0.227 4.227 14 C 0.083 3.917 15 C -0.507 4.507 16 H 0.083 0.917 17 C 0.049 3.951 18 N -0.771 5.771 19 Si 1.074 2.926 20 H -0.273 1.273 21 H -0.261 1.261 22 H -0.288 1.288 23 C -0.133 4.133 24 C 0.121 3.879 25 H 0.083 0.917 26 C -0.192 4.192 27 C 0.058 3.942 28 O -0.374 6.374 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.294 0.706 40 H 0.117 0.883 41 H 0.097 0.903 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.104 0.896 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.756 -6.640 -2.809 15.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.021 3.979 4 H 0.080 0.920 5 C -0.037 4.037 6 N -0.837 5.837 7 S 2.783 3.217 8 O -0.953 6.953 9 O -0.964 6.964 10 C -0.700 4.700 11 C -0.205 4.205 12 C -0.096 4.096 13 C -0.246 4.246 14 C 0.079 3.921 15 C -0.533 4.533 16 H 0.101 0.899 17 C -0.177 4.177 18 N -0.390 5.390 19 Si 0.901 3.099 20 H -0.200 1.200 21 H -0.186 1.186 22 H -0.216 1.216 23 C -0.154 4.154 24 C 0.015 3.985 25 H 0.101 0.899 26 C -0.250 4.250 27 C -0.021 4.021 28 O -0.293 6.293 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.122 0.878 35 H 0.095 0.905 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.106 0.894 40 H 0.135 0.865 41 H 0.116 0.884 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.122 0.878 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.561 -6.717 -3.318 14.626 hybrid contribution -0.776 0.450 0.576 1.066 sum -13.337 -6.267 -2.742 14.989 Atomic orbital electron populations 1.21697 0.95068 1.01497 1.02291 1.21528 0.96859 0.93832 1.03194 1.22411 0.93321 0.94559 0.87624 0.91965 1.22072 0.94909 0.82806 1.03921 1.57917 1.61762 1.23496 1.40484 1.01945 0.73805 0.73253 0.72702 1.93611 1.84004 1.31309 1.86420 1.93478 1.87379 1.70574 1.44927 1.29870 1.21342 1.04227 1.14567 1.19886 0.96389 0.97699 1.06526 1.20615 0.94982 0.97422 0.96602 1.21167 0.99864 0.97449 1.06120 1.17647 0.91697 0.92575 0.90180 1.20693 1.01109 1.05885 1.25594 0.89880 1.27441 1.00994 0.94191 0.95059 1.70601 1.40403 1.22091 1.05871 0.83645 0.73432 0.75912 0.76961 1.20040 1.18568 1.21552 1.20681 0.97221 0.97510 0.99992 1.21686 0.95260 0.93029 0.88498 0.89931 1.22868 1.05035 0.93081 1.03986 1.23005 0.93379 0.82941 1.02758 1.87912 1.79401 1.23874 1.38097 0.91927 0.92938 0.92720 0.90178 0.90724 0.87812 0.90526 0.87497 0.88059 0.88157 0.89409 0.86509 0.88396 0.91359 0.89916 0.87789 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.81 37.16 0.36 -0.86 16 2 C -0.12 -1.06 5.64 -26.73 -0.15 -1.21 16 3 C 0.08 0.92 2.76 -26.79 -0.07 0.85 16 4 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 5 C 0.09 1.16 5.99 -3.75 -0.02 1.14 16 6 N -1.00 -15.28 3.35 -106.27 -0.36 -15.64 16 7 S 2.68 50.00 5.31 -107.50 -0.57 49.43 16 8 O -0.96 -18.97 12.53 -57.17 -0.72 -19.68 16 9 O -0.97 -19.42 15.72 -57.17 -0.90 -20.32 16 10 C -0.61 -13.09 5.96 -39.66 -0.24 -13.32 16 11 C -0.18 -3.94 9.53 -39.29 -0.37 -4.31 16 12 C -0.08 -1.67 10.02 -39.66 -0.40 -2.07 16 13 C -0.23 -5.42 8.03 -38.87 -0.31 -5.73 16 14 C 0.08 2.09 5.60 -106.83 -0.60 1.49 16 15 C -0.51 -12.95 9.30 -37.74 -0.35 -13.31 16 16 H 0.08 2.14 8.06 -52.49 -0.42 1.72 16 17 C 0.05 1.22 5.31 -17.34 -0.09 1.12 16 18 N -0.77 -19.13 13.65 55.55 0.76 -18.37 16 19 Si 1.07 22.85 25.06 -169.99 -4.26 18.59 16 20 H -0.27 -5.54 6.55 56.52 0.37 -5.17 16 21 H -0.26 -5.54 7.06 56.52 0.40 -5.14 16 22 H -0.29 -5.86 7.11 56.52 0.40 -5.46 16 23 C -0.13 -3.10 8.63 -38.88 -0.34 -3.44 16 24 C 0.12 1.68 3.71 -67.43 -0.25 1.43 16 25 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 26 C -0.19 -2.82 7.55 37.15 0.28 -2.54 16 27 C 0.06 0.67 6.29 37.31 0.23 0.90 16 28 O -0.37 -4.62 9.92 -35.23 -0.35 -4.97 16 29 H 0.06 0.57 7.82 -51.93 -0.41 0.16 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 1.33 6.80 -51.93 -0.35 0.98 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.11 2.06 7.60 -52.49 -0.40 1.66 16 37 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 38 H 0.10 2.31 2.62 -52.49 -0.14 2.17 16 39 H 0.29 7.02 8.73 -40.82 -0.36 6.67 16 40 H 0.12 2.57 5.38 -52.49 -0.28 2.29 16 41 H 0.10 1.49 6.34 -51.93 -0.33 1.16 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 1.43 3.40 -51.93 -0.18 1.25 16 44 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 356.63 15.07 5.37 5.37 Total: -1.00 -28.94 356.63 -9.68 -38.62 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.34 Total: 6.84 kcal Atomic # 6 Polarization: -37.55 SS G_CDS: -2.32 Total: -39.86 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.40 Total: -34.01 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -1.96 Total: -44.98 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.26 Total: 18.59 kcal Atomic # 16 Polarization: 50.00 SS G_CDS: -0.57 Total: 49.43 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.94 -9.68 -38.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593643028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.934 kcal (2) G-P(sol) polarization free energy of solvation -28.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds