Wall clock time and date at job start Tue Mar 31 2020 22:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47186 * 2 1 4 4 H 1.09003 * 109.51658 * 304.89653 * 3 2 1 5 5 C 1.52885 * 109.58299 * 184.88367 * 3 2 1 6 6 N 1.47150 * 108.60657 * 187.92624 * 5 3 2 7 7 S 1.65605 * 120.97914 * 230.49703 * 6 5 3 8 8 O 1.42104 * 106.40197 * 148.42296 * 7 6 5 9 9 O 1.42096 * 106.40082 * 15.50401 * 7 6 5 10 10 C 1.76199 * 107.21831 * 261.96131 * 7 6 5 11 11 C 1.38656 * 119.87272 * 90.00304 * 10 7 6 12 12 C 1.38618 * 120.50199 * 179.97438 * 11 10 7 13 13 C 1.37642 * 120.24270 * 359.97438 * 12 11 10 14 14 C 1.40690 * 119.74553 * 0.02562 * 13 12 11 15 15 C 1.41403 * 120.23950 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99338 * 179.61366 * 15 14 13 17 17 C 1.39940 * 120.00208 * 359.60843 * 15 14 13 18 18 N 1.30827 * 120.00108 * 218.77602 * 17 15 14 19 19 Si 1.86798 * 119.99883 * 38.50420 * 17 15 14 20 20 H 1.48501 * 109.46916 * 263.84858 * 19 17 15 21 21 H 1.48497 * 109.47073 * 23.84748 * 19 17 15 22 22 H 1.48503 * 109.47001 * 143.85112 * 19 17 15 23 23 C 1.37594 * 119.87952 * 270.32479 * 10 7 6 24 24 C 1.47144 * 118.04053 * 50.22525 * 6 5 3 25 25 H 1.09003 * 109.68697 * 69.47337 * 24 6 5 26 26 C 1.52994 * 109.68559 * 189.99380 * 24 6 5 27 27 C 1.53300 * 108.38685 * 309.71679 * 24 6 5 28 28 O 1.42960 * 109.22038 * 52.29644 * 27 24 6 29 29 H 1.08992 * 109.47051 * 300.00067 * 1 2 3 30 30 H 1.08998 * 109.47147 * 59.99854 * 1 2 3 31 31 H 1.08994 * 109.47319 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46677 * 240.00098 * 2 1 3 33 33 H 1.08998 * 109.47147 * 120.00146 * 2 1 3 34 34 H 1.08995 * 109.62016 * 68.10326 * 5 3 2 35 35 H 1.09005 * 109.52011 * 307.68277 * 5 3 2 36 36 H 1.07999 * 119.75065 * 0.02562 * 11 10 7 37 37 H 1.07997 * 119.87609 * 180.02562 * 12 11 10 38 38 H 1.08000 * 120.12012 * 180.02562 * 13 12 11 39 39 H 0.97002 * 119.99709 * 354.71120 * 18 17 15 40 40 H 1.08001 * 120.12422 * 359.97384 * 23 10 7 41 41 H 1.09001 * 109.47198 * 62.77186 * 26 24 6 42 42 H 1.09005 * 109.47659 * 182.77589 * 26 24 6 43 43 H 1.09004 * 109.47156 * 302.77269 * 26 24 6 44 44 H 1.08993 * 109.51728 * 172.22616 * 27 24 6 45 45 H 1.09006 * 109.50873 * 292.33125 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6073 1.9817 -0.8427 5 6 3.5639 1.4471 -0.1226 6 7 4.0463 2.8238 0.0707 7 16 5.0887 3.5216 -1.0104 8 8 4.7918 4.9112 -1.0145 9 8 5.0524 2.7156 -2.1802 10 6 6.7130 3.3619 -0.3464 11 6 7.4750 2.2431 -0.6469 12 6 8.7545 2.1044 -0.1320 13 6 9.2827 3.0786 0.6843 14 6 8.5185 4.2181 0.9959 15 6 9.0511 5.2256 1.8331 16 1 8.4633 6.1016 2.0646 17 6 10.3395 5.0876 2.3615 18 7 10.5880 5.4700 3.5877 19 14 11.7026 4.3503 1.3187 20 1 11.8321 2.9029 1.6245 21 1 11.3754 4.5250 -0.1192 22 1 12.9841 5.0368 1.6218 23 6 7.2179 4.3446 0.4737 24 6 3.5703 3.5643 1.2498 25 1 4.0002 3.1318 2.1533 26 6 3.9813 5.0336 1.1361 27 6 2.0419 3.4584 1.3028 28 8 1.6624 2.0825 1.2213 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.8526 1.0926 -1.1121 35 1 3.9928 0.7974 0.6404 36 1 7.0689 1.4744 -1.2876 37 1 9.3393 1.2290 -0.3729 38 1 10.2800 2.9687 1.0841 39 1 9.9007 5.9190 4.1044 40 1 6.6208 5.2128 0.7103 41 1 3.5024 5.4784 0.2637 42 1 3.6702 5.5685 2.0335 43 1 5.0640 5.1009 1.0300 44 1 1.6798 3.8811 2.2399 45 1 1.6098 4.0062 0.4653 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593643028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:59 Heat of formation + Delta-G solvation = -107.918724 kcal Electronic energy + Delta-G solvation = -28690.484642 eV Core-core repulsion = 24799.355269 eV Total energy + Delta-G solvation = -3891.129373 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.67164 -39.68119 -38.66626 -37.06184 -36.42219 -35.93742 -35.04549 -32.48590 -32.40460 -31.87378 -28.64175 -27.32119 -26.93227 -24.46320 -24.19676 -23.00037 -22.58474 -21.87969 -20.80808 -19.69261 -18.40699 -18.16573 -17.84701 -17.42993 -17.30678 -16.57292 -16.15747 -15.88674 -15.75907 -15.65829 -15.48891 -15.02406 -14.65253 -14.45899 -14.35594 -14.18306 -13.93527 -13.78845 -13.52392 -13.39346 -13.26674 -13.08388 -12.90250 -12.76929 -12.70442 -12.37819 -12.20561 -12.09646 -11.99321 -11.89774 -11.82668 -11.68044 -11.28442 -11.16698 -11.04879 -10.85015 -10.13469 -9.86207 -9.80284 -9.62247 -6.66178 -0.66280 0.20857 0.73523 1.25857 1.47184 1.68335 1.86091 2.02174 2.31577 2.63457 2.74035 3.24077 3.25971 3.55845 3.64529 3.85013 4.03945 4.05417 4.13710 4.17379 4.25485 4.27624 4.41363 4.47569 4.55330 4.59581 4.64165 4.65275 4.76682 4.80037 4.89245 4.94923 5.02149 5.10763 5.15706 5.16660 5.26991 5.27543 5.42197 5.43479 5.48630 5.52008 5.62563 5.68546 5.82969 6.16909 6.25282 6.42470 6.62700 7.67959 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018910 B = 0.003536 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.326982 B = 7915.946153 C = 8258.840884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C 0.079 3.921 4 H 0.063 0.937 5 C 0.080 3.920 6 N -0.994 5.994 7 S 2.705 3.295 8 O -0.977 6.977 9 O -0.983 6.983 10 C -0.620 4.620 11 C -0.179 4.179 12 C -0.082 4.082 13 C -0.244 4.244 14 C 0.062 3.938 15 C -0.542 4.542 16 H 0.060 0.940 17 C 0.023 3.977 18 N -0.789 5.789 19 Si 1.100 2.900 20 H -0.253 1.253 21 H -0.264 1.264 22 H -0.273 1.273 23 C -0.152 4.152 24 C 0.118 3.882 25 H 0.083 0.917 26 C -0.193 4.193 27 C 0.060 3.940 28 O -0.379 6.379 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.108 0.892 39 H 0.289 0.711 40 H 0.117 0.883 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.054 0.946 44 H 0.130 0.870 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.972 -8.959 -3.690 17.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C 0.020 3.980 4 H 0.081 0.919 5 C -0.045 4.045 6 N -0.834 5.834 7 S 2.801 3.199 8 O -0.967 6.967 9 O -0.974 6.974 10 C -0.709 4.709 11 C -0.200 4.200 12 C -0.100 4.100 13 C -0.263 4.263 14 C 0.058 3.942 15 C -0.569 4.569 16 H 0.078 0.922 17 C -0.199 4.199 18 N -0.408 5.408 19 Si 0.922 3.078 20 H -0.179 1.179 21 H -0.188 1.188 22 H -0.200 1.200 23 C -0.172 4.172 24 C 0.013 3.987 25 H 0.101 0.899 26 C -0.251 4.251 27 C -0.018 4.018 28 O -0.298 6.298 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.151 0.849 37 H 0.157 0.843 38 H 0.125 0.875 39 H 0.100 0.900 40 H 0.134 0.866 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.073 0.927 44 H 0.147 0.853 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.751 -9.035 -4.180 16.976 hybrid contribution -0.595 1.101 0.776 1.473 sum -14.346 -7.934 -3.404 16.743 Atomic orbital electron populations 1.21678 0.94421 1.02319 1.01916 1.21574 0.97371 0.92229 1.04046 1.22535 0.91985 0.96044 0.87436 0.91857 1.22375 0.96257 0.81416 1.04467 1.57738 1.60403 1.24710 1.40515 1.01385 0.72971 0.72905 0.72641 1.93605 1.83769 1.32525 1.86789 1.93456 1.87344 1.70805 1.45778 1.30425 1.23487 1.03564 1.13408 1.20386 0.96234 0.97824 1.05532 1.21070 0.95436 0.98065 0.95477 1.21440 1.00413 0.97603 1.06823 1.17928 0.92711 0.93047 0.90497 1.20669 1.02091 1.06197 1.27906 0.92177 1.28383 1.02135 0.94119 0.95241 1.70653 1.40362 1.23530 1.06288 0.83323 0.72134 0.76758 0.75624 1.17938 1.18832 1.19990 1.20793 0.96982 0.98454 1.00980 1.21854 0.97068 0.92116 0.87706 0.89917 1.22823 1.03026 0.94262 1.05008 1.23083 0.91291 0.83012 1.04405 1.87923 1.79221 1.24109 1.38554 0.92913 0.92700 0.91338 0.88634 0.90592 0.87459 0.89685 0.84937 0.84257 0.87459 0.89965 0.86559 0.89010 0.88844 0.92748 0.85265 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.81 71.98 0.71 -1.33 16 2 C -0.11 -1.75 5.64 30.59 0.17 -1.58 16 3 C 0.08 1.62 2.76 30.55 0.08 1.71 16 4 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 5 C 0.08 1.90 5.99 86.22 0.52 2.42 16 6 N -0.99 -28.88 3.35 -490.12 -1.64 -30.52 16 7 S 2.71 98.17 5.31 -56.49 -0.30 97.87 16 8 O -0.98 -38.38 12.53 -128.00 -1.60 -39.99 16 9 O -0.98 -37.49 15.72 -128.00 -2.01 -39.50 16 10 C -0.62 -26.32 5.96 22.22 0.13 -26.19 16 11 C -0.18 -7.29 9.53 22.46 0.21 -7.08 16 12 C -0.08 -3.37 10.02 22.22 0.22 -3.14 16 13 C -0.24 -11.48 8.03 22.73 0.18 -11.30 16 14 C 0.06 3.18 5.60 -21.29 -0.12 3.06 16 15 C -0.54 -29.03 9.30 23.46 0.22 -28.81 16 16 H 0.06 3.35 8.06 -2.91 -0.02 3.32 16 17 C 0.02 1.17 5.31 85.25 0.45 1.62 16 18 N -0.79 -40.33 13.65 21.83 0.30 -40.03 16 19 Si 1.10 45.67 25.06 68.60 1.72 47.39 16 20 H -0.25 -9.65 6.55 99.48 0.65 -8.99 16 21 H -0.26 -10.95 7.06 99.48 0.70 -10.25 16 22 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 23 C -0.15 -7.22 8.63 22.73 0.20 -7.03 16 24 C 0.12 3.11 3.71 44.97 0.17 3.27 16 25 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 26 C -0.19 -5.59 7.55 71.98 0.54 -5.05 16 27 C 0.06 1.26 6.29 72.08 0.45 1.71 16 28 O -0.38 -8.41 9.92 -148.98 -1.48 -9.89 16 29 H 0.05 0.84 7.82 -2.39 -0.02 0.82 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.11 2.48 6.80 -2.39 -0.02 2.47 16 35 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.13 4.67 7.60 -2.91 -0.02 4.65 16 37 H 0.14 4.60 8.06 -2.91 -0.02 4.58 16 38 H 0.11 4.82 2.62 -2.91 -0.01 4.81 16 39 H 0.29 14.50 8.73 -92.71 -0.81 13.69 16 40 H 0.12 5.41 5.38 -2.91 -0.02 5.39 16 41 H 0.09 2.76 6.34 -2.39 -0.02 2.74 16 42 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 43 H 0.05 1.91 3.40 -2.38 -0.01 1.91 16 44 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -62.75 356.63 0.03 -62.72 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.91 Total: 29.66 kcal Atomic # 6 Polarization: -81.86 SS G_CDS: 4.14 Total: -77.71 kcal Atomic # 7 Polarization: -69.21 SS G_CDS: -1.34 Total: -70.55 kcal Atomic # 8 Polarization: -84.29 SS G_CDS: -5.09 Total: -89.38 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.72 Total: 47.39 kcal Atomic # 16 Polarization: 98.17 SS G_CDS: -0.30 Total: 97.87 kcal Total: -62.75 0.03 -62.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593643028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.203 kcal (2) G-P(sol) polarization free energy of solvation -62.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds