Wall clock time and date at job start Tue Mar 31 2020 22:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46847 * 2 1 4 4 H 1.08995 * 109.51109 * 54.90064 * 3 2 1 5 5 C 1.53304 * 109.50878 * 175.00134 * 3 2 1 6 6 N 1.47151 * 108.38152 * 172.22758 * 5 3 2 7 7 S 1.65603 * 120.98092 * 129.44212 * 6 5 3 8 8 O 1.42102 * 106.39885 * 203.53849 * 7 6 5 9 9 O 1.42100 * 106.40367 * 336.45710 * 7 6 5 10 10 C 1.76200 * 107.21606 * 89.99681 * 7 6 5 11 11 C 1.38660 * 119.87352 * 90.00469 * 10 7 6 12 12 C 1.38614 * 120.49797 * 179.97438 * 11 10 7 13 13 C 1.37638 * 120.25044 * 359.96968 * 12 11 10 14 14 C 1.40698 * 119.74240 * 0.02562 * 13 12 11 15 15 C 1.41396 * 120.23971 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99450 * 204.39139 * 15 14 13 17 17 C 1.39940 * 120.00317 * 24.38501 * 15 14 13 18 18 N 1.30828 * 120.00096 * 17.87446 * 17 15 14 19 19 Si 1.86800 * 120.00371 * 197.87165 * 17 15 14 20 20 H 1.48508 * 109.46807 * 0.02562 * 19 17 15 21 21 H 1.48493 * 109.47543 * 120.00049 * 19 17 15 22 22 H 1.48496 * 109.47292 * 240.00423 * 19 17 15 23 23 C 1.37595 * 119.87681 * 269.72390 * 10 7 6 24 24 C 1.47155 * 118.03513 * 309.46211 * 6 5 3 25 25 H 1.09000 * 109.67931 * 170.26353 * 24 6 5 26 26 C 1.52997 * 109.68109 * 290.81411 * 24 6 5 27 27 C 1.53293 * 108.38402 * 50.53590 * 24 6 5 28 28 O 1.42955 * 109.22498 * 307.69828 * 27 24 6 29 29 H 1.09001 * 109.46687 * 59.99989 * 1 2 3 30 30 H 1.08998 * 109.47189 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46794 * 300.00243 * 1 2 3 32 32 H 1.09005 * 109.47267 * 240.00110 * 2 1 3 33 33 H 1.08998 * 109.47397 * 120.00094 * 2 1 3 34 34 H 1.09006 * 109.67901 * 291.94806 * 5 3 2 35 35 H 1.09001 * 109.68181 * 52.46484 * 5 3 2 36 36 H 1.08004 * 119.75293 * 359.94734 * 11 10 7 37 37 H 1.08005 * 119.87102 * 179.97438 * 12 11 10 38 38 H 1.08001 * 120.12542 * 180.02562 * 13 12 11 39 39 H 0.97000 * 120.00086 * 179.97438 * 18 17 15 40 40 H 1.07994 * 120.12462 * 359.97438 * 23 10 7 41 41 H 1.09002 * 109.47280 * 60.00050 * 26 24 6 42 42 H 1.09000 * 109.46954 * 180.02562 * 26 24 6 43 43 H 1.09002 * 109.47270 * 299.99915 * 26 24 6 44 44 H 1.08999 * 109.51290 * 67.62252 * 27 24 6 45 45 H 1.09000 * 109.51054 * 187.76945 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6044 1.9827 0.8405 5 6 3.5679 1.4455 0.1259 6 7 4.0465 2.8239 -0.0644 7 16 5.0844 3.5232 1.0201 8 8 4.9155 4.9280 0.8885 9 8 4.9077 2.8309 2.2484 10 6 6.7227 3.1661 0.4789 11 6 7.3687 4.0350 -0.3873 12 6 8.6577 3.7670 -0.8209 13 6 9.3111 2.6332 -0.3943 14 6 8.6654 1.7444 0.4847 15 6 9.3270 0.5768 0.9300 16 1 8.7529 -0.2772 1.2582 17 6 10.7254 0.5277 0.9455 18 7 11.4195 1.6354 0.8922 19 14 11.6012 -1.1194 1.0422 20 1 10.5966 -2.2120 1.0913 21 1 12.4627 -1.2932 -0.1548 22 1 12.4405 -1.1627 2.2665 23 6 7.3584 2.0290 0.9219 24 6 3.5753 3.5627 -1.2466 25 1 3.8678 4.6096 -1.1658 26 6 4.1834 2.9531 -2.5113 27 6 2.0472 3.4565 -1.3056 28 8 1.6674 2.0808 -1.2238 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8553 1.0904 1.1156 35 1 4.0003 0.7975 -0.6365 36 1 6.8636 4.9271 -0.7272 37 1 9.1512 4.4505 -1.4960 38 1 10.3156 2.4265 -0.7331 39 1 12.3889 1.6014 0.9032 40 1 6.8552 1.3562 1.6005 41 1 3.8808 1.9092 -2.5932 42 1 3.8326 3.5031 -3.3845 43 1 5.2705 3.0132 -2.4571 44 1 1.6116 4.0048 -0.4703 45 1 1.6890 3.8779 -2.2449 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593643029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:03 Heat of formation + Delta-G solvation = -109.376943 kcal Electronic energy + Delta-G solvation = -28517.376308 eV Core-core repulsion = 24626.183702 eV Total energy + Delta-G solvation = -3891.192606 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.70109 -37.66345 -36.82952 -35.40021 -35.28442 -34.12173 -33.86802 -31.21045 -30.10265 -29.81832 -27.88669 -26.19767 -25.50715 -23.98438 -22.03430 -21.66451 -21.00811 -20.35192 -18.61898 -18.00150 -17.31158 -16.75251 -16.00542 -15.74177 -15.38043 -15.16338 -15.05026 -14.76566 -14.51686 -13.93036 -13.82037 -13.49359 -13.42013 -13.27198 -12.81850 -12.62535 -12.29458 -12.08376 -11.99508 -11.95418 -11.63882 -11.61423 -11.44859 -11.39658 -11.36984 -11.16561 -11.13127 -11.06669 -11.04325 -10.90618 -10.60747 -10.37735 -10.07852 -9.78379 -9.61913 -9.37503 -8.67215 -8.05081 -7.72759 -6.94565 -4.55852 0.88728 2.16596 2.60246 2.98705 3.01936 3.05109 3.33573 3.65730 3.81106 4.20498 4.38217 4.49670 4.72777 4.80272 4.90324 4.99620 5.02680 5.17498 5.21341 5.33748 5.41874 5.44709 5.51139 5.57925 5.64101 5.71549 5.83317 5.85569 5.94721 6.01028 6.01861 6.14224 6.17522 6.23764 6.39846 6.58934 6.62854 6.74153 6.88968 7.02315 7.11772 7.19319 7.35542 7.69909 7.77919 7.91743 8.37691 8.64722 8.69344 10.01038 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.003675 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.389532 B = 7616.443347 C = 8514.366881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.081 3.919 4 H 0.063 0.937 5 C 0.090 3.910 6 N -0.998 5.998 7 S 2.684 3.316 8 O -0.972 6.972 9 O -0.968 6.968 10 C -0.629 4.629 11 C -0.146 4.146 12 C -0.121 4.121 13 C -0.117 4.117 14 C 0.092 3.908 15 C -0.460 4.460 16 H 0.083 0.917 17 C 0.075 3.925 18 N -0.793 5.793 19 Si 0.911 3.089 20 H -0.259 1.259 21 H -0.271 1.271 22 H -0.273 1.273 23 C -0.126 4.126 24 C 0.112 3.888 25 H 0.108 0.892 26 C -0.160 4.160 27 C 0.059 3.941 28 O -0.371 6.371 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.283 0.717 40 H 0.110 0.890 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.438 -1.062 -5.464 15.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.022 3.978 4 H 0.081 0.919 5 C -0.036 4.036 6 N -0.835 5.835 7 S 2.783 3.217 8 O -0.963 6.963 9 O -0.959 6.959 10 C -0.722 4.722 11 C -0.168 4.168 12 C -0.140 4.140 13 C -0.137 4.137 14 C 0.089 3.911 15 C -0.490 4.490 16 H 0.101 0.899 17 C -0.143 4.143 18 N -0.418 5.418 19 Si 0.735 3.265 20 H -0.182 1.182 21 H -0.196 1.196 22 H -0.198 1.198 23 C -0.147 4.147 24 C 0.006 3.994 25 H 0.126 0.874 26 C -0.219 4.219 27 C -0.019 4.019 28 O -0.290 6.290 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.096 0.904 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.143 0.857 39 H 0.094 0.906 40 H 0.128 0.872 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.563 -0.580 -4.823 15.352 hybrid contribution 1.462 -0.713 -0.160 1.635 sum -13.101 -1.293 -4.983 14.076 Atomic orbital electron populations 1.21696 0.95151 1.01456 1.02201 1.21530 0.96751 0.93905 1.03249 1.22486 0.93399 0.94501 0.87446 0.91926 1.22123 0.94784 0.82803 1.03889 1.57999 1.62266 1.23608 1.39623 1.01858 0.74003 0.72947 0.72904 1.93493 1.86595 1.29787 1.86396 1.93514 1.86400 1.75019 1.40924 1.29751 1.21499 1.06422 1.14481 1.20052 0.96441 0.98645 1.01618 1.20808 0.94705 0.97892 1.00602 1.21647 1.00319 0.94823 0.96939 1.17675 0.90832 0.92794 0.89829 1.19634 0.91164 0.99959 1.38207 0.89911 1.25941 0.98033 0.98214 0.92148 1.69790 1.08570 1.28481 1.34980 0.86203 0.79540 0.82030 0.78692 1.18220 1.19597 1.19816 1.20723 0.97661 0.95509 1.00857 1.21676 0.95129 0.97052 0.85585 0.87408 1.22077 1.01863 1.02016 0.95922 1.22902 0.93183 0.83330 1.02527 1.87903 1.79524 1.23662 1.37894 0.92003 0.92770 0.92963 0.90752 0.90136 0.87950 0.90377 0.87745 0.88388 0.85735 0.90579 0.87189 0.91608 0.91770 0.91481 0.92778 0.87831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.81 37.16 0.36 -0.90 16 2 C -0.12 -1.10 5.64 -26.73 -0.15 -1.25 16 3 C 0.08 0.94 2.78 -26.57 -0.07 0.86 16 4 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 5 C 0.09 1.20 5.60 -3.53 -0.02 1.18 16 6 N -1.00 -15.09 3.03 -106.03 -0.32 -15.41 16 7 S 2.68 51.20 5.74 -107.50 -0.62 50.58 16 8 O -0.97 -19.81 15.89 -57.17 -0.91 -20.72 16 9 O -0.97 -20.37 15.88 -57.17 -0.91 -21.28 16 10 C -0.63 -13.75 5.97 -39.66 -0.24 -13.99 16 11 C -0.15 -3.16 9.53 -39.29 -0.37 -3.54 16 12 C -0.12 -2.69 10.02 -39.66 -0.40 -3.09 16 13 C -0.12 -2.91 8.70 -38.87 -0.34 -3.24 16 14 C 0.09 2.36 5.58 -106.83 -0.60 1.77 16 15 C -0.46 -11.72 9.05 -37.74 -0.34 -12.06 16 16 H 0.08 2.01 7.91 -52.48 -0.42 1.60 16 17 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 18 N -0.79 -19.71 10.95 55.55 0.61 -19.10 16 19 Si 0.91 17.91 29.60 -169.99 -5.03 12.88 16 20 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 21 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 22 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 23 C -0.13 -3.01 9.26 -38.88 -0.36 -3.37 16 24 C 0.11 1.44 3.30 -67.42 -0.22 1.22 16 25 H 0.11 1.40 6.94 -51.93 -0.36 1.04 16 26 C -0.16 -1.93 9.24 37.16 0.34 -1.59 16 27 C 0.06 0.64 6.36 37.31 0.24 0.88 16 28 O -0.37 -4.40 9.56 -35.23 -0.34 -4.74 16 29 H 0.06 0.57 7.83 -51.93 -0.41 0.16 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.10 1.40 6.95 -51.93 -0.36 1.04 16 35 H 0.08 1.00 7.67 -51.93 -0.40 0.60 16 36 H 0.10 2.04 7.60 -52.48 -0.40 1.64 16 37 H 0.10 1.91 8.06 -52.48 -0.42 1.49 16 38 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 39 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 40 H 0.11 2.51 7.60 -52.49 -0.40 2.11 16 41 H 0.06 0.81 7.23 -51.93 -0.38 0.43 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 373.47 15.07 5.63 5.63 Total: -1.00 -29.89 373.47 -10.94 -40.83 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.80 Total: 6.74 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: -2.26 Total: -35.41 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.29 Total: -34.51 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -2.15 Total: -46.73 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Atomic # 16 Polarization: 51.20 SS G_CDS: -0.62 Total: 50.58 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.89 -10.94 -40.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593643029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.545 kcal (2) G-P(sol) polarization free energy of solvation -29.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds