Wall clock time and date at job start Tue Mar 31 2020 22:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46847 * 2 1 4 4 H 1.08995 * 109.51109 * 54.90064 * 3 2 1 5 5 C 1.53304 * 109.50878 * 175.00134 * 3 2 1 6 6 N 1.47151 * 108.38152 * 172.22758 * 5 3 2 7 7 S 1.65603 * 120.98092 * 129.44212 * 6 5 3 8 8 O 1.42102 * 106.39885 * 203.53849 * 7 6 5 9 9 O 1.42100 * 106.40367 * 336.45710 * 7 6 5 10 10 C 1.76200 * 107.21606 * 89.99681 * 7 6 5 11 11 C 1.38660 * 119.87352 * 90.00469 * 10 7 6 12 12 C 1.38614 * 120.49797 * 179.97438 * 11 10 7 13 13 C 1.37638 * 120.25044 * 359.96968 * 12 11 10 14 14 C 1.40698 * 119.74240 * 0.02562 * 13 12 11 15 15 C 1.41396 * 120.23971 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99450 * 204.39139 * 15 14 13 17 17 C 1.39940 * 120.00317 * 24.38501 * 15 14 13 18 18 N 1.30828 * 120.00096 * 17.87446 * 17 15 14 19 19 Si 1.86800 * 120.00371 * 197.87165 * 17 15 14 20 20 H 1.48508 * 109.46807 * 0.02562 * 19 17 15 21 21 H 1.48493 * 109.47543 * 120.00049 * 19 17 15 22 22 H 1.48496 * 109.47292 * 240.00423 * 19 17 15 23 23 C 1.37595 * 119.87681 * 269.72390 * 10 7 6 24 24 C 1.47155 * 118.03513 * 309.46211 * 6 5 3 25 25 H 1.09000 * 109.67931 * 170.26353 * 24 6 5 26 26 C 1.52997 * 109.68109 * 290.81411 * 24 6 5 27 27 C 1.53293 * 108.38402 * 50.53590 * 24 6 5 28 28 O 1.42955 * 109.22498 * 307.69828 * 27 24 6 29 29 H 1.09001 * 109.46687 * 59.99989 * 1 2 3 30 30 H 1.08998 * 109.47189 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46794 * 300.00243 * 1 2 3 32 32 H 1.09005 * 109.47267 * 240.00110 * 2 1 3 33 33 H 1.08998 * 109.47397 * 120.00094 * 2 1 3 34 34 H 1.09006 * 109.67901 * 291.94806 * 5 3 2 35 35 H 1.09001 * 109.68181 * 52.46484 * 5 3 2 36 36 H 1.08004 * 119.75293 * 359.94734 * 11 10 7 37 37 H 1.08005 * 119.87102 * 179.97438 * 12 11 10 38 38 H 1.08001 * 120.12542 * 180.02562 * 13 12 11 39 39 H 0.97000 * 120.00086 * 179.97438 * 18 17 15 40 40 H 1.07994 * 120.12462 * 359.97438 * 23 10 7 41 41 H 1.09002 * 109.47280 * 60.00050 * 26 24 6 42 42 H 1.09000 * 109.46954 * 180.02562 * 26 24 6 43 43 H 1.09002 * 109.47270 * 299.99915 * 26 24 6 44 44 H 1.08999 * 109.51290 * 67.62252 * 27 24 6 45 45 H 1.09000 * 109.51054 * 187.76945 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6044 1.9827 0.8405 5 6 3.5679 1.4455 0.1259 6 7 4.0465 2.8239 -0.0644 7 16 5.0844 3.5232 1.0201 8 8 4.9155 4.9280 0.8885 9 8 4.9077 2.8309 2.2484 10 6 6.7227 3.1661 0.4789 11 6 7.3687 4.0350 -0.3873 12 6 8.6577 3.7670 -0.8209 13 6 9.3111 2.6332 -0.3943 14 6 8.6654 1.7444 0.4847 15 6 9.3270 0.5768 0.9300 16 1 8.7529 -0.2772 1.2582 17 6 10.7254 0.5277 0.9455 18 7 11.4195 1.6354 0.8922 19 14 11.6012 -1.1194 1.0422 20 1 10.5966 -2.2120 1.0913 21 1 12.4627 -1.2932 -0.1548 22 1 12.4405 -1.1627 2.2665 23 6 7.3584 2.0290 0.9219 24 6 3.5753 3.5627 -1.2466 25 1 3.8678 4.6096 -1.1658 26 6 4.1834 2.9531 -2.5113 27 6 2.0472 3.4565 -1.3056 28 8 1.6674 2.0808 -1.2238 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8553 1.0904 1.1156 35 1 4.0003 0.7975 -0.6365 36 1 6.8636 4.9271 -0.7272 37 1 9.1512 4.4505 -1.4960 38 1 10.3156 2.4265 -0.7331 39 1 12.3889 1.6014 0.9032 40 1 6.8552 1.3562 1.6005 41 1 3.8808 1.9092 -2.5932 42 1 3.8326 3.5031 -3.3845 43 1 5.2705 3.0132 -2.4571 44 1 1.6116 4.0048 -0.4703 45 1 1.6890 3.8779 -2.2449 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593643029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:02 Heat of formation + Delta-G solvation = -127.365777 kcal Electronic energy + Delta-G solvation = -28518.156362 eV Core-core repulsion = 24626.183702 eV Total energy + Delta-G solvation = -3891.972660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.67532 -39.47279 -38.43289 -36.99920 -36.34120 -35.69092 -35.00794 -32.15718 -31.93642 -31.61791 -28.88011 -27.38395 -27.10569 -24.92704 -23.70117 -22.84032 -22.65256 -21.42039 -20.18493 -19.41323 -18.79370 -17.78260 -17.74216 -17.09510 -16.81122 -16.55834 -16.33434 -15.98539 -15.85635 -15.27563 -15.11716 -14.95470 -14.59051 -14.35407 -14.25041 -13.75742 -13.70551 -13.45239 -13.38567 -13.30422 -13.13498 -13.09908 -12.95168 -12.86398 -12.78783 -12.61955 -12.39908 -12.20626 -12.15735 -11.95360 -11.81823 -11.58067 -11.46135 -11.23644 -11.16243 -11.07454 -9.93278 -9.74585 -9.58581 -8.75149 -6.47480 -0.63515 0.37470 0.81472 1.36470 1.43399 1.51983 1.92530 2.16576 2.52731 2.69331 2.79554 3.23431 3.46932 3.68096 3.72311 3.95570 4.06980 4.11468 4.23833 4.26684 4.28030 4.40240 4.49453 4.58094 4.62541 4.71134 4.76838 4.80722 4.84610 4.87339 4.91197 5.02452 5.03584 5.16578 5.17806 5.20022 5.27880 5.37957 5.41282 5.49593 5.52303 5.56950 5.85861 5.91212 6.07676 6.22199 6.50136 6.77675 6.82195 8.23201 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.003675 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.389532 B = 7616.443347 C = 8514.366881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.084 3.916 4 H 0.063 0.937 5 C 0.082 3.918 6 N -0.991 5.991 7 S 2.708 3.292 8 O -0.982 6.982 9 O -0.990 6.990 10 C -0.637 4.637 11 C -0.147 4.147 12 C -0.122 4.122 13 C -0.141 4.141 14 C 0.064 3.936 15 C -0.497 4.497 16 H 0.081 0.919 17 C 0.036 3.964 18 N -0.824 5.824 19 Si 0.985 3.015 20 H -0.256 1.256 21 H -0.261 1.261 22 H -0.267 1.267 23 C -0.146 4.146 24 C 0.102 3.898 25 H 0.109 0.891 26 C -0.156 4.156 27 C 0.059 3.941 28 O -0.374 6.374 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.292 0.708 40 H 0.109 0.891 41 H 0.062 0.938 42 H 0.092 0.908 43 H 0.045 0.955 44 H 0.058 0.942 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.898 -1.256 -6.521 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C 0.025 3.975 4 H 0.080 0.920 5 C -0.043 4.043 6 N -0.830 5.830 7 S 2.804 3.196 8 O -0.973 6.973 9 O -0.980 6.980 10 C -0.726 4.726 11 C -0.167 4.167 12 C -0.141 4.141 13 C -0.160 4.160 14 C 0.061 3.939 15 C -0.526 4.526 16 H 0.099 0.901 17 C -0.179 4.179 18 N -0.450 5.450 19 Si 0.805 3.195 20 H -0.180 1.180 21 H -0.186 1.186 22 H -0.191 1.191 23 C -0.167 4.167 24 C -0.003 4.003 25 H 0.127 0.873 26 C -0.214 4.214 27 C -0.019 4.019 28 O -0.292 6.292 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.131 0.869 39 H 0.103 0.897 40 H 0.127 0.873 41 H 0.081 0.919 42 H 0.110 0.890 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.995 -0.760 -5.889 17.061 hybrid contribution 1.793 -0.554 0.123 1.881 sum -14.201 -1.313 -5.767 15.384 Atomic orbital electron populations 1.21664 0.94208 1.02248 1.01999 1.21567 0.97504 0.92524 1.03768 1.22518 0.91617 0.95847 0.87541 0.91951 1.22352 0.96453 0.81745 1.03732 1.57760 1.60686 1.24533 1.40020 1.01152 0.73127 0.72538 0.72832 1.93470 1.86459 1.30615 1.86734 1.93480 1.86376 1.75440 1.42719 1.30275 1.23522 1.05327 1.13483 1.20415 0.96233 0.99164 1.00929 1.21137 0.95042 0.97438 1.00494 1.21652 1.00267 0.96119 0.98003 1.18030 0.91854 0.93501 0.90510 1.19897 0.92423 1.00274 1.40007 0.90105 1.26788 0.98141 1.01874 0.91122 1.69829 1.09303 1.30511 1.35358 0.85115 0.78195 0.77154 0.79043 1.17985 1.18561 1.19133 1.20801 0.97576 0.96662 1.01655 1.22020 0.96813 0.96826 0.84666 0.87334 1.22051 1.00430 1.02301 0.96657 1.23062 0.91322 0.83107 1.04403 1.87914 1.79296 1.24156 1.37847 0.92546 0.91523 0.92785 0.90610 0.89326 0.88659 0.89929 0.85286 0.85550 0.86863 0.89727 0.87330 0.91883 0.88950 0.93605 0.92399 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.81 71.98 0.71 -1.45 16 2 C -0.12 -1.99 5.64 30.60 0.17 -1.82 16 3 C 0.08 1.81 2.78 30.70 0.09 1.90 16 4 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 5 C 0.08 2.15 5.60 86.36 0.48 2.63 16 6 N -0.99 -29.00 3.03 -489.35 -1.48 -30.49 16 7 S 2.71 102.44 5.74 -56.49 -0.32 102.11 16 8 O -0.98 -38.97 15.89 -128.00 -2.03 -41.00 16 9 O -0.99 -41.93 15.88 -128.00 -2.03 -43.97 16 10 C -0.64 -28.10 5.97 22.22 0.13 -27.97 16 11 C -0.15 -6.28 9.53 22.46 0.21 -6.06 16 12 C -0.12 -5.45 10.02 22.22 0.22 -5.23 16 13 C -0.14 -7.17 8.70 22.73 0.20 -6.97 16 14 C 0.06 3.42 5.58 -21.29 -0.12 3.31 16 15 C -0.50 -26.27 9.05 23.46 0.21 -26.06 16 16 H 0.08 4.11 7.91 -2.91 -0.02 4.09 16 17 C 0.04 1.77 5.14 85.25 0.44 2.21 16 18 N -0.82 -41.93 10.95 21.83 0.24 -41.69 16 19 Si 0.98 37.01 29.60 68.60 2.03 39.04 16 20 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 21 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 22 H -0.27 -9.67 7.11 99.48 0.71 -8.97 16 23 C -0.15 -7.21 9.26 22.73 0.21 -7.00 16 24 C 0.10 2.42 3.30 44.96 0.15 2.57 16 25 H 0.11 2.58 6.94 -2.39 -0.02 2.57 16 26 C -0.16 -3.46 9.24 71.98 0.67 -2.79 16 27 C 0.06 1.12 6.36 72.08 0.46 1.58 16 28 O -0.37 -7.92 9.56 -148.98 -1.42 -9.35 16 29 H 0.06 0.91 7.83 -2.39 -0.02 0.89 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.10 2.62 6.95 -2.38 -0.02 2.60 16 35 H 0.08 2.07 7.67 -2.39 -0.02 2.05 16 36 H 0.13 4.82 7.60 -2.91 -0.02 4.80 16 37 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 38 H 0.11 5.93 6.16 -2.91 -0.02 5.91 16 39 H 0.29 13.29 8.30 -92.71 -0.77 12.52 16 40 H 0.11 5.21 7.60 -2.91 -0.02 5.19 16 41 H 0.06 1.43 7.23 -2.39 -0.02 1.41 16 42 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -65.19 373.47 0.18 -65.01 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.98 Total: 31.49 kcal Atomic # 6 Polarization: -75.38 SS G_CDS: 4.23 Total: -71.15 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -1.25 Total: -72.18 kcal Atomic # 8 Polarization: -88.83 SS G_CDS: -5.49 Total: -94.32 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 2.03 Total: 39.04 kcal Atomic # 16 Polarization: 102.44 SS G_CDS: -0.32 Total: 102.11 kcal Total: -65.19 0.18 -65.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593643029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.359 kcal (2) G-P(sol) polarization free energy of solvation -65.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds