Wall clock time and date at job start Tue Mar 31 2020 22:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47312 * 2 1 4 4 H 1.09003 * 109.55590 * 55.12816 * 3 2 1 5 5 C 1.53296 * 109.51472 * 175.25692 * 3 2 1 6 6 N 1.47147 * 108.38676 * 172.22819 * 5 3 2 7 7 S 1.65598 * 120.98515 * 129.44140 * 6 5 3 8 8 O 1.42100 * 106.40403 * 212.53007 * 7 6 5 9 9 O 1.42099 * 106.40137 * 345.44471 * 7 6 5 10 10 C 1.76197 * 107.21948 * 98.98803 * 7 6 5 11 11 C 1.38654 * 119.87656 * 276.36640 * 10 7 6 12 12 C 1.38611 * 120.50278 * 179.71917 * 11 10 7 13 13 C 1.37644 * 120.24519 * 0.55764 * 12 11 10 14 14 C 1.40697 * 119.74666 * 359.72172 * 13 12 11 15 15 C 1.41398 * 120.24488 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99504 * 208.83574 * 15 14 13 17 17 C 1.39937 * 119.99958 * 28.83882 * 15 14 13 18 18 N 1.30823 * 120.00192 * 10.12084 * 17 15 14 19 19 Si 1.86801 * 120.00074 * 190.11707 * 17 15 14 20 20 H 1.48495 * 109.46814 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47145 * 120.00315 * 19 17 15 22 22 H 1.48505 * 109.47181 * 240.00295 * 19 17 15 23 23 C 1.37600 * 119.87651 * 96.63844 * 10 7 6 24 24 C 1.47152 * 118.03657 * 309.46195 * 6 5 3 25 25 H 1.09003 * 109.68277 * 290.81751 * 24 6 5 26 26 C 1.52998 * 109.71568 * 170.27789 * 24 6 5 27 27 C 1.53299 * 108.38186 * 50.53477 * 24 6 5 28 28 O 1.42961 * 109.51312 * 295.00261 * 3 2 1 29 29 H 1.08996 * 109.47321 * 60.00160 * 1 2 3 30 30 H 1.09005 * 109.47016 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47146 * 300.00102 * 1 2 3 32 32 H 1.08999 * 109.46740 * 239.99860 * 2 1 3 33 33 H 1.09005 * 109.47133 * 120.00375 * 2 1 3 34 34 H 1.09003 * 109.67671 * 291.94597 * 5 3 2 35 35 H 1.08996 * 109.68044 * 52.49948 * 5 3 2 36 36 H 1.07998 * 119.74501 * 0.02562 * 11 10 7 37 37 H 1.08005 * 119.88022 * 180.25767 * 12 11 10 38 38 H 1.08004 * 120.12360 * 179.70513 * 13 12 11 39 39 H 0.97005 * 120.00679 * 180.02562 * 18 17 15 40 40 H 1.08005 * 120.12355 * 359.97438 * 23 10 7 41 41 H 1.08996 * 109.46967 * 293.79030 * 26 24 6 42 42 H 1.08992 * 109.47250 * 53.79597 * 26 24 6 43 43 H 1.09000 * 109.47036 * 173.79854 * 26 24 6 44 44 H 1.09006 * 109.51090 * 187.78063 * 27 24 6 45 45 H 1.08999 * 109.51563 * 67.62897 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6080 1.9822 0.8427 5 6 3.5683 1.4452 0.1195 6 7 4.0462 2.8238 -0.0707 7 16 5.0887 3.5215 1.0104 8 8 4.7727 4.9067 1.0358 9 8 5.0739 2.6997 2.1695 10 6 6.7089 3.3932 0.3299 11 6 7.4382 2.2260 0.4982 12 6 8.7116 2.1088 -0.0366 13 6 9.2707 3.1569 -0.7319 14 6 8.5422 4.3482 -0.9039 15 6 9.1062 5.4313 -1.6168 16 1 8.8139 6.4438 -1.3806 17 6 10.0429 5.1912 -2.6283 18 7 10.2510 3.9707 -3.0509 19 14 10.9962 6.6134 -3.3753 20 1 10.5787 7.8831 -2.7283 21 1 12.4502 6.4021 -3.1599 22 1 10.7170 6.6856 -4.8321 23 6 7.2479 4.4537 -0.3616 24 6 3.5702 3.5644 -1.2498 25 1 3.9996 3.1315 -2.1533 26 6 3.9812 5.0338 -1.1370 27 6 2.0418 3.4584 -1.3026 28 8 1.6622 2.0825 -1.2212 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8599 1.0886 1.1074 35 1 3.9975 0.7989 -0.6461 36 1 7.0088 1.4001 1.0458 37 1 9.2691 1.1935 0.0970 38 1 10.2650 3.0651 -1.1436 39 1 10.9006 3.8041 -3.7518 40 1 6.6796 5.3634 -0.4880 41 1 3.4555 5.4950 -0.3010 42 1 5.0564 5.0986 -0.9703 43 1 3.7245 5.5548 -2.0594 44 1 1.6797 3.8811 -2.2399 45 1 1.6097 4.0055 -0.4647 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593643030.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:06 Heat of formation + Delta-G solvation = -112.261700 kcal Electronic energy + Delta-G solvation = -28636.015298 eV Core-core repulsion = 24744.697600 eV Total energy + Delta-G solvation = -3891.317698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.62533 -39.49994 -38.60658 -37.01102 -36.38781 -35.65212 -35.01273 -32.43870 -31.91491 -31.62001 -28.59179 -27.39787 -27.20172 -24.40130 -23.65501 -22.94482 -22.85986 -21.85886 -20.28536 -19.41329 -18.12936 -17.92482 -17.72699 -17.31361 -16.91895 -16.60340 -16.34086 -15.94469 -15.66821 -15.52023 -15.24077 -15.01931 -14.61997 -14.42661 -14.31659 -13.96912 -13.75356 -13.54483 -13.24747 -13.18397 -13.05185 -13.00339 -12.88946 -12.78337 -12.69000 -12.67375 -12.22644 -12.14994 -12.08705 -11.89458 -11.79899 -11.55530 -11.35010 -11.23310 -11.18805 -11.03042 -9.95934 -9.71739 -9.53352 -8.68555 -6.48865 -0.59669 0.37519 0.80807 1.37402 1.43310 1.51871 1.93488 2.17749 2.56879 2.71842 2.76835 3.30191 3.45793 3.60868 3.67938 3.89375 4.06387 4.08316 4.20475 4.25667 4.29942 4.36312 4.49116 4.57971 4.63742 4.67185 4.71127 4.79392 4.84794 4.87468 4.94650 5.01772 5.06045 5.13987 5.16970 5.19697 5.28355 5.38177 5.48513 5.50025 5.51006 5.56943 5.85026 5.94122 6.07794 6.19474 6.51445 6.79958 6.82957 8.28450 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017647 B = 0.003448 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.280453 B = 8119.018273 C = 8449.756904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C 0.080 3.920 4 H 0.064 0.936 5 C 0.079 3.921 6 N -0.995 5.995 7 S 2.708 3.292 8 O -0.976 6.976 9 O -0.988 6.988 10 C -0.644 4.644 11 C -0.144 4.144 12 C -0.126 4.126 13 C -0.134 4.134 14 C 0.061 3.939 15 C -0.496 4.496 16 H 0.078 0.922 17 C 0.034 3.966 18 N -0.831 5.831 19 Si 0.985 3.015 20 H -0.259 1.259 21 H -0.264 1.264 22 H -0.265 1.265 23 C -0.138 4.138 24 C 0.118 3.882 25 H 0.082 0.918 26 C -0.189 4.189 27 C 0.060 3.940 28 O -0.380 6.380 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.290 0.710 40 H 0.119 0.881 41 H 0.088 0.912 42 H 0.055 0.945 43 H 0.094 0.906 44 H 0.130 0.870 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.457 -5.301 0.924 15.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C 0.021 3.979 4 H 0.082 0.918 5 C -0.046 4.046 6 N -0.834 5.834 7 S 2.804 3.196 8 O -0.966 6.966 9 O -0.978 6.978 10 C -0.733 4.733 11 C -0.165 4.165 12 C -0.145 4.145 13 C -0.154 4.154 14 C 0.058 3.942 15 C -0.525 4.525 16 H 0.096 0.904 17 C -0.180 4.180 18 N -0.458 5.458 19 Si 0.806 3.194 20 H -0.183 1.183 21 H -0.189 1.189 22 H -0.189 1.189 23 C -0.159 4.159 24 C 0.012 3.988 25 H 0.100 0.900 26 C -0.247 4.247 27 C -0.018 4.018 28 O -0.299 6.299 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.102 0.898 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.133 0.867 39 H 0.101 0.899 40 H 0.137 0.863 41 H 0.107 0.893 42 H 0.073 0.927 43 H 0.112 0.888 44 H 0.148 0.852 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.645 -5.154 1.422 15.590 hybrid contribution 1.697 0.522 -0.740 1.924 sum -12.948 -4.632 0.682 13.769 Atomic orbital electron populations 1.21677 0.94369 1.02310 1.01938 1.21575 0.97410 0.92295 1.03992 1.22604 0.91873 0.95985 0.87459 0.91799 1.22450 0.96305 0.81473 1.04337 1.57759 1.60598 1.24479 1.40599 1.01259 0.72944 0.72787 0.72580 1.93592 1.83489 1.32783 1.86777 1.93452 1.87512 1.70184 1.46698 1.30347 1.23653 1.02322 1.16977 1.20442 0.96334 0.96145 1.03578 1.21161 0.96002 0.98729 0.98638 1.21722 0.99961 0.94656 0.99033 1.18075 0.91027 0.94019 0.91056 1.19854 1.21979 0.94345 1.16364 0.90358 1.26719 0.95865 0.99528 0.95856 1.69789 1.29134 1.22903 1.23935 0.85101 0.78034 0.78017 0.78264 1.18296 1.18876 1.18933 1.21019 0.95791 0.97192 1.01878 1.21858 0.97004 0.92263 0.87646 0.90042 1.22729 1.03141 0.94043 1.04764 1.23098 0.91343 0.82936 1.04404 1.87918 1.79199 1.24195 1.38539 0.92872 0.91353 0.92680 0.90638 0.88716 0.87605 0.89817 0.85412 0.85554 0.86683 0.89946 0.86326 0.89339 0.92659 0.88773 0.85217 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.81 71.98 0.71 -1.41 16 2 C -0.11 -1.85 5.65 30.59 0.17 -1.68 16 3 C 0.08 1.71 2.78 30.69 0.09 1.79 16 4 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 5 C 0.08 1.98 6.02 86.36 0.52 2.50 16 6 N -0.99 -29.92 3.34 -489.38 -1.63 -31.55 16 7 S 2.71 100.98 5.26 -56.49 -0.30 100.68 16 8 O -0.98 -38.78 12.51 -128.00 -1.60 -40.38 16 9 O -0.99 -39.02 15.89 -128.00 -2.03 -41.05 16 10 C -0.64 -28.25 5.92 22.22 0.13 -28.12 16 11 C -0.14 -6.20 9.53 22.46 0.21 -5.99 16 12 C -0.13 -5.66 10.02 22.22 0.22 -5.44 16 13 C -0.13 -6.84 8.66 22.73 0.20 -6.64 16 14 C 0.06 3.25 5.55 -21.29 -0.12 3.14 16 15 C -0.50 -26.10 9.07 23.46 0.21 -25.89 16 16 H 0.08 4.00 7.87 -2.91 -0.02 3.98 16 17 C 0.03 1.68 5.27 85.25 0.45 2.13 16 18 N -0.83 -41.79 10.81 21.82 0.24 -41.56 16 19 Si 0.99 37.22 29.57 68.60 2.03 39.25 16 20 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 21 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 22 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 23 C -0.14 -6.71 8.42 22.73 0.19 -6.52 16 24 C 0.12 3.19 3.70 44.97 0.17 3.36 16 25 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 26 C -0.19 -5.53 7.57 71.98 0.55 -4.98 16 27 C 0.06 1.29 6.29 72.08 0.45 1.75 16 28 O -0.38 -8.69 9.92 -148.98 -1.48 -10.17 16 29 H 0.05 0.87 7.82 -2.39 -0.02 0.85 16 30 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.11 2.59 6.79 -2.39 -0.02 2.57 16 35 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.13 4.76 7.76 -2.91 -0.02 4.74 16 37 H 0.13 4.82 8.06 -2.91 -0.02 4.79 16 38 H 0.12 6.05 6.21 -2.91 -0.02 6.04 16 39 H 0.29 13.12 8.30 -92.70 -0.77 12.35 16 40 H 0.12 5.56 5.79 -2.91 -0.02 5.55 16 41 H 0.09 2.64 6.56 -2.39 -0.02 2.62 16 42 H 0.05 1.97 3.44 -2.39 -0.01 1.96 16 43 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.13 2.10 8.14 -2.38 -0.02 2.09 16 45 H 0.06 1.27 8.12 -2.39 -0.02 1.25 16 Total: -1.00 -63.42 362.86 0.36 -63.05 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: 0.99 Total: 33.73 kcal Atomic # 6 Polarization: -76.15 SS G_CDS: 4.15 Total: -72.00 kcal Atomic # 7 Polarization: -71.71 SS G_CDS: -1.40 Total: -73.11 kcal Atomic # 8 Polarization: -86.49 SS G_CDS: -5.11 Total: -91.60 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.25 kcal Atomic # 16 Polarization: 100.98 SS G_CDS: -0.30 Total: 100.68 kcal Total: -63.42 0.36 -63.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593643030.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.209 kcal (2) G-P(sol) polarization free energy of solvation -63.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds