Wall clock time and date at job start Tue Mar 31 2020 22:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47479 * 2 1 4 4 H 1.08999 * 109.51161 * 304.90191 * 3 2 1 5 5 C 1.53293 * 109.51490 * 184.74463 * 3 2 1 6 6 N 1.47150 * 108.38402 * 187.77328 * 5 3 2 7 7 S 1.65603 * 120.98304 * 230.55555 * 6 5 3 8 8 O 1.42098 * 106.39911 * 23.51832 * 7 6 5 9 9 O 1.42099 * 106.40322 * 156.43987 * 7 6 5 10 10 C 1.76193 * 107.21730 * 269.97984 * 7 6 5 11 11 C 1.38661 * 119.87722 * 269.72158 * 10 7 6 12 12 C 1.38617 * 120.50312 * 179.72091 * 11 10 7 13 13 C 1.37637 * 120.24396 * 0.56024 * 12 11 10 14 14 C 1.40694 * 119.74890 * 359.71743 * 13 12 11 15 15 C 1.41400 * 120.24717 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00086 * 204.36955 * 15 14 13 17 17 C 1.39941 * 119.99437 * 24.37347 * 15 14 13 18 18 N 1.30817 * 120.00566 * 17.86344 * 17 15 14 19 19 Si 1.86806 * 119.99844 * 197.86145 * 17 15 14 20 20 H 1.48497 * 109.47168 * 89.99806 * 19 17 15 21 21 H 1.48495 * 109.47126 * 210.00093 * 19 17 15 22 22 H 1.48506 * 109.46992 * 330.00152 * 19 17 15 23 23 C 1.37602 * 119.87589 * 89.99987 * 10 7 6 24 24 C 1.47149 * 118.03660 * 50.53661 * 6 5 3 25 25 H 1.09001 * 109.68463 * 189.74236 * 24 6 5 26 26 C 1.52999 * 109.71635 * 69.20569 * 24 6 5 27 27 C 1.53296 * 108.38619 * 309.46068 * 24 6 5 28 28 O 1.42963 * 109.21907 * 52.30311 * 27 24 6 29 29 H 1.08997 * 109.46949 * 300.00178 * 1 2 3 30 30 H 1.08998 * 109.46876 * 60.00062 * 1 2 3 31 31 H 1.09001 * 109.46986 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47217 * 239.99346 * 2 1 3 33 33 H 1.09007 * 109.46994 * 120.00138 * 2 1 3 34 34 H 1.09003 * 109.68262 * 307.49692 * 5 3 2 35 35 H 1.08994 * 109.67931 * 68.04832 * 5 3 2 36 36 H 1.07997 * 119.74704 * 0.02562 * 11 10 7 37 37 H 1.08000 * 119.87568 * 180.25683 * 12 11 10 38 38 H 1.08007 * 120.12757 * 179.70249 * 13 12 11 39 39 H 0.96999 * 120.00294 * 180.02562 * 18 17 15 40 40 H 1.07992 * 120.12833 * 0.02562 * 23 10 7 41 41 H 1.08999 * 109.46911 * 301.06019 * 26 24 6 42 42 H 1.09004 * 109.47321 * 61.05349 * 26 24 6 43 43 H 1.08996 * 109.47407 * 181.05320 * 26 24 6 44 44 H 1.08994 * 109.51606 * 292.38459 * 27 24 6 45 45 H 1.09000 * 109.51336 * 172.22458 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6073 1.9816 -0.8426 5 6 3.5684 1.4451 -0.1195 6 7 4.0463 2.8238 0.0708 7 16 5.0888 3.5215 -1.0104 8 8 4.9176 2.8270 -2.2382 9 8 4.9191 4.9265 -0.8819 10 6 6.7248 3.1657 -0.4614 11 6 7.3690 4.0391 0.4017 12 6 8.6538 3.7690 0.8463 13 6 9.3089 2.6341 0.4253 14 6 8.6673 1.7436 -0.4549 15 6 9.3302 0.5743 -0.8937 16 1 9.0441 0.1087 -1.8252 17 6 10.3570 0.0205 -0.1209 18 7 10.4775 0.3495 1.1395 19 14 11.5558 -1.1889 -0.8890 20 1 12.7145 -0.4487 -1.4499 21 1 12.0309 -2.1406 0.1471 22 1 10.8748 -1.9388 -1.9750 23 6 7.3605 2.0251 -0.8952 24 6 3.5702 3.5643 1.2498 25 1 3.8630 4.6112 1.1688 26 6 4.1730 2.9576 2.5185 27 6 2.0419 3.4585 1.3027 28 8 1.6623 2.0825 1.2212 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 3.9977 0.7988 0.6461 35 1 3.8599 1.0885 -1.1073 36 1 6.8640 4.9340 0.7339 37 1 9.1445 4.4542 1.5218 38 1 10.3118 2.4280 0.7692 39 1 11.1894 -0.0341 1.6751 40 1 6.8588 1.3487 -1.5713 41 1 3.8857 1.9086 2.5914 42 1 5.2595 3.0347 2.4774 43 1 3.8032 3.4970 3.3904 44 1 1.6098 4.0054 0.4647 45 1 1.6798 3.8812 2.2399 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593643031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:10 Heat of formation + Delta-G solvation = -127.200509 kcal Electronic energy + Delta-G solvation = -28577.727242 eV Core-core repulsion = 24685.761748 eV Total energy + Delta-G solvation = -3891.965494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.68021 -39.47193 -38.43113 -37.00013 -36.34777 -35.69291 -35.01313 -32.16667 -31.93487 -31.61711 -28.89079 -27.38214 -27.11285 -24.93485 -23.70038 -22.84171 -22.65693 -21.42434 -20.18676 -19.41687 -18.79368 -17.78073 -17.74624 -17.09702 -16.82201 -16.56179 -16.33356 -15.98752 -15.86192 -15.28041 -15.11612 -14.96273 -14.59596 -14.33968 -14.26155 -13.74735 -13.71095 -13.45689 -13.37966 -13.35990 -13.14207 -13.08437 -12.96582 -12.83670 -12.79346 -12.63098 -12.41120 -12.23174 -12.16699 -11.95783 -11.82087 -11.58200 -11.43521 -11.25127 -11.16106 -11.07474 -9.96641 -9.73444 -9.58309 -8.75253 -6.47618 -0.62851 0.37240 0.81727 1.36290 1.44923 1.49258 1.91915 2.16139 2.53065 2.68824 2.79147 3.23337 3.47355 3.67405 3.71811 3.94932 4.05974 4.10631 4.22939 4.26541 4.27001 4.40086 4.48781 4.57276 4.61803 4.70499 4.76123 4.80367 4.83407 4.87017 4.90380 5.01481 5.03295 5.15917 5.17344 5.19084 5.27216 5.37712 5.39998 5.49191 5.51934 5.56334 5.85902 5.91165 6.07570 6.21941 6.49983 6.77436 6.82082 8.22606 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013518 B = 0.003790 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.873294 B = 7385.441408 C = 8222.572856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C 0.085 3.915 4 H 0.065 0.935 5 C 0.083 3.917 6 N -0.991 5.991 7 S 2.709 3.291 8 O -0.989 6.989 9 O -0.981 6.981 10 C -0.637 4.637 11 C -0.148 4.148 12 C -0.122 4.122 13 C -0.141 4.141 14 C 0.065 3.935 15 C -0.498 4.498 16 H 0.078 0.922 17 C 0.040 3.960 18 N -0.820 5.820 19 Si 0.982 3.018 20 H -0.262 1.262 21 H -0.265 1.265 22 H -0.259 1.259 23 C -0.146 4.146 24 C 0.103 3.897 25 H 0.110 0.890 26 C -0.156 4.156 27 C 0.060 3.940 28 O -0.375 6.375 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.292 0.708 40 H 0.108 0.892 41 H 0.060 0.940 42 H 0.042 0.958 43 H 0.092 0.908 44 H 0.060 0.940 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.506 0.867 3.294 14.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C 0.026 3.974 4 H 0.083 0.917 5 C -0.043 4.043 6 N -0.831 5.831 7 S 2.804 3.196 8 O -0.979 6.979 9 O -0.971 6.971 10 C -0.726 4.726 11 C -0.168 4.168 12 C -0.141 4.141 13 C -0.161 4.161 14 C 0.062 3.938 15 C -0.527 4.527 16 H 0.097 0.903 17 C -0.176 4.176 18 N -0.446 5.446 19 Si 0.803 3.197 20 H -0.187 1.187 21 H -0.189 1.189 22 H -0.183 1.183 23 C -0.167 4.167 24 C -0.003 4.003 25 H 0.128 0.872 26 C -0.215 4.215 27 C -0.019 4.019 28 O -0.293 6.293 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.131 0.869 39 H 0.103 0.897 40 H 0.127 0.873 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.111 0.889 44 H 0.078 0.922 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.712 1.207 2.901 15.044 hybrid contribution 1.801 -0.639 -0.035 1.911 sum -12.911 0.568 2.867 13.238 Atomic orbital electron populations 1.21659 0.94095 1.02251 1.02045 1.21569 0.97593 0.92573 1.03698 1.22512 0.91478 0.95812 0.87641 0.91729 1.22333 0.96529 0.81759 1.03634 1.57761 1.60535 1.24439 1.40316 1.01131 0.73077 0.72542 0.72813 1.93479 1.86407 1.75349 1.42660 1.93472 1.86420 1.30480 1.86757 1.30285 1.23596 1.05169 1.13591 1.20410 0.96732 0.99269 1.00434 1.21134 0.95456 0.97293 1.00184 1.21646 0.99939 0.93781 1.00760 1.18026 0.91061 0.93101 0.91655 1.19864 1.16574 1.09186 1.07083 0.90342 1.26719 0.98173 0.98496 0.94226 1.69808 1.29099 1.38596 1.07051 0.85193 0.77877 0.77562 0.79097 1.18665 1.18919 1.18263 1.20824 0.95506 0.96890 1.03462 1.22009 0.96825 0.96792 0.84638 0.87191 1.22047 1.00350 1.02214 0.96840 1.23069 0.91243 0.83093 1.04458 1.87917 1.79073 1.24162 1.38148 0.92555 0.92658 0.91543 0.89306 0.90825 0.90354 0.88581 0.85285 0.85554 0.86855 0.89696 0.87348 0.92138 0.93856 0.88883 0.92195 0.84757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.81 71.98 0.71 -1.53 16 2 C -0.12 -2.11 5.65 30.59 0.17 -1.94 16 3 C 0.09 1.90 2.78 30.69 0.09 1.99 16 4 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 5 C 0.08 2.26 5.60 86.35 0.48 2.74 16 6 N -0.99 -29.84 3.04 -489.39 -1.49 -31.33 16 7 S 2.71 102.32 5.74 -56.49 -0.32 101.99 16 8 O -0.99 -41.45 15.89 -128.00 -2.03 -43.48 16 9 O -0.98 -38.50 15.88 -128.00 -2.03 -40.53 16 10 C -0.64 -28.13 5.97 22.22 0.13 -28.00 16 11 C -0.15 -6.33 9.53 22.46 0.21 -6.12 16 12 C -0.12 -5.43 10.02 22.22 0.22 -5.21 16 13 C -0.14 -7.21 8.70 22.73 0.20 -7.01 16 14 C 0.06 3.46 5.58 -21.29 -0.12 3.34 16 15 C -0.50 -26.35 9.05 23.46 0.21 -26.14 16 16 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 17 C 0.04 1.93 5.14 85.26 0.44 2.37 16 18 N -0.82 -40.94 10.95 21.82 0.24 -40.70 16 19 Si 0.98 36.96 29.60 68.60 2.03 38.99 16 20 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 21 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 22 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 23 C -0.15 -7.21 9.26 22.73 0.21 -7.00 16 24 C 0.10 2.53 3.30 44.97 0.15 2.68 16 25 H 0.11 2.68 6.95 -2.39 -0.02 2.66 16 26 C -0.16 -3.74 9.25 71.98 0.67 -3.07 16 27 C 0.06 1.17 6.36 72.08 0.46 1.63 16 28 O -0.37 -8.28 9.57 -148.98 -1.43 -9.70 16 29 H 0.06 0.95 7.82 -2.39 -0.02 0.93 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 1.35 8.14 -2.38 -0.02 1.34 16 34 H 0.08 2.13 7.64 -2.39 -0.02 2.11 16 35 H 0.10 2.73 6.94 -2.39 -0.02 2.71 16 36 H 0.13 4.82 7.59 -2.91 -0.02 4.80 16 37 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 38 H 0.11 5.92 6.16 -2.91 -0.02 5.90 16 39 H 0.29 13.09 8.30 -92.71 -0.77 12.32 16 40 H 0.11 5.21 7.60 -2.91 -0.02 5.19 16 41 H 0.06 1.51 7.21 -2.39 -0.02 1.49 16 42 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -64.15 373.42 0.18 -63.97 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: 0.98 Total: 32.08 kcal Atomic # 6 Polarization: -75.51 SS G_CDS: 4.23 Total: -71.28 kcal Atomic # 7 Polarization: -70.78 SS G_CDS: -1.25 Total: -72.03 kcal Atomic # 8 Polarization: -88.23 SS G_CDS: -5.49 Total: -93.72 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Atomic # 16 Polarization: 102.32 SS G_CDS: -0.32 Total: 101.99 kcal Total: -64.15 0.18 -63.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593643031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.229 kcal (2) G-P(sol) polarization free energy of solvation -64.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds