Wall clock time and date at job start Tue Mar 31 2020 22:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35899 * 116.99786 * 2 1 4 4 C 1.38753 * 120.08185 * 0.02562 * 3 2 1 5 5 C 1.38048 * 119.90851 * 179.97438 * 4 3 2 6 6 C 1.38494 * 120.17529 * 359.96495 * 5 4 3 7 7 C 1.38104 * 120.02449 * 0.03506 * 6 5 4 8 8 C 1.38366 * 119.99192 * 359.97438 * 7 6 5 9 9 C 1.50795 * 108.86101 * 179.76136 * 7 6 5 10 10 N 1.46634 * 107.69879 * 0.39403 * 9 7 6 11 11 S 1.65597 * 126.55563 * 179.88471 * 10 9 7 12 12 O 1.42093 * 104.27757 * 153.63704 * 11 10 9 13 13 O 1.42105 * 104.27889 * 25.77745 * 11 10 9 14 14 C 1.81401 * 104.44946 * 269.70859 * 11 10 9 15 15 C 1.53001 * 109.47441 * 180.02562 * 14 11 10 16 16 C 1.52999 * 109.47159 * 59.99910 * 15 14 11 17 17 C 1.53006 * 109.46578 * 299.99882 * 15 14 11 18 18 C 1.50697 * 109.46995 * 180.02562 * 15 14 11 19 19 H 1.07991 * 120.00449 * 359.72153 * 18 15 14 20 20 C 1.37885 * 119.99686 * 179.97438 * 18 15 14 21 21 N 1.31516 * 119.99913 * 359.72095 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.72528 * 20 18 15 23 23 H 1.48498 * 109.47416 * 59.99812 * 22 20 18 24 24 H 1.48508 * 109.46609 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46903 * 299.99397 * 22 20 18 26 26 C 1.46624 * 106.88598 * 359.61705 * 10 9 7 27 27 H 1.08997 * 109.47416 * 59.99801 * 1 2 3 28 28 H 1.08996 * 109.47010 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46880 * 299.99634 * 1 2 3 30 30 H 1.07999 * 120.04375 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.91044 * 180.02562 * 5 4 3 32 32 H 1.08003 * 119.96472 * 180.02562 * 8 7 6 33 33 H 1.08993 * 109.92642 * 240.77873 * 9 7 6 34 34 H 1.09002 * 109.69571 * 119.86727 * 9 7 6 35 35 H 1.08998 * 109.47401 * 59.99842 * 14 11 10 36 36 H 1.09006 * 109.47274 * 300.00142 * 14 11 10 37 37 H 1.08997 * 109.47084 * 180.02562 * 16 15 14 38 38 H 1.09007 * 109.46899 * 300.00470 * 16 15 14 39 39 H 1.08993 * 109.47037 * 60.00122 * 16 15 14 40 40 H 1.08998 * 109.47109 * 299.99589 * 17 15 14 41 41 H 1.08994 * 109.47204 * 59.99946 * 17 15 14 42 42 H 1.09006 * 109.46531 * 179.97438 * 17 15 14 43 43 H 0.97000 * 119.99651 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.81228 * 119.78959 * 26 10 9 45 45 H 1.08995 * 109.81227 * 240.69270 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2918 2.3756 0.0005 5 6 1.9222 3.6038 0.0011 6 6 3.3053 3.6763 0.0018 7 6 4.0580 2.5185 0.0013 8 6 3.4303 1.2854 0.0005 9 6 5.5201 2.8876 -0.0037 10 7 5.6104 4.3511 0.0035 11 16 6.9989 5.2536 0.0043 12 8 6.6186 6.4821 -0.5999 13 8 7.9670 4.4079 -0.6014 14 6 7.3782 5.4989 1.7612 15 6 8.6558 6.3299 1.8960 16 6 8.4533 7.6891 1.2233 17 6 9.8158 5.5948 1.2215 18 6 8.9712 6.5331 3.3555 19 1 8.3227 6.1155 4.1113 20 6 10.0849 7.2567 3.7259 21 7 10.8750 7.7648 2.8054 22 14 10.4717 7.5150 5.5350 23 1 10.6644 6.1979 6.1931 24 1 11.7124 8.3206 5.6657 25 1 9.3454 8.2328 6.1843 26 6 4.2363 4.8626 0.0032 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2132 2.3214 0.0005 31 1 1.3353 4.5104 0.0019 32 1 4.0194 0.3802 0.0005 33 1 6.0000 2.4921 -0.8988 34 1 6.0040 2.4833 0.8854 35 1 7.5220 4.5306 2.2405 36 1 6.5519 6.0229 2.2416 37 1 9.3636 8.2810 1.3190 38 1 8.2253 7.5417 0.1676 39 1 7.6269 8.2128 1.7038 40 1 9.9600 4.6265 1.7008 41 1 9.5879 5.4474 0.1659 42 1 10.7259 6.1871 1.3172 43 1 11.6587 8.2735 3.0659 44 1 4.0661 5.4647 0.8957 45 1 4.0670 5.4662 -0.8885 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594481083.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:00 Heat of formation + Delta-G solvation = -68.524718 kcal Electronic energy + Delta-G solvation = -27685.665662 eV Core-core repulsion = 23796.244541 eV Total energy + Delta-G solvation = -3889.421120 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.77194 -38.99963 -36.62458 -36.30766 -35.77010 -35.32950 -31.84053 -31.67728 -30.19499 -28.59094 -26.86958 -26.67481 -25.73445 -25.24358 -24.47897 -21.77372 -21.35397 -19.49836 -18.68018 -18.04428 -17.46423 -16.29087 -16.20785 -16.17128 -15.87973 -15.86236 -15.13353 -14.83134 -14.78016 -14.34329 -13.88088 -13.71257 -13.21889 -13.10998 -12.99781 -12.91329 -12.73125 -12.52394 -12.20185 -12.12525 -11.88589 -11.73204 -11.48571 -11.33922 -11.11322 -11.06845 -10.97114 -10.95651 -10.72447 -10.42916 -10.29639 -10.12641 -9.67086 -9.66317 -9.29766 -8.91484 -8.68453 -8.41094 -8.18972 -6.04512 -4.16639 0.70296 1.01849 1.13152 2.85523 3.04344 3.26546 3.32030 3.33714 3.41893 4.09200 4.29333 4.33979 4.38532 4.52637 4.68130 4.75097 4.77624 4.97823 5.02865 5.09616 5.19799 5.20792 5.38361 5.43155 5.52163 5.55261 5.63278 5.66758 5.74487 5.91534 6.05084 6.14185 6.17004 6.35598 6.39146 6.54291 6.68741 6.77611 6.88206 7.02123 7.07384 7.29751 7.48580 7.66668 7.96552 8.07873 8.31328 8.81591 9.48728 10.96802 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.002701 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.140168 B =10364.211837 C =10868.074815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.128 3.872 4 C -0.205 4.205 5 C -0.057 4.057 6 C -0.135 4.135 7 C -0.059 4.059 8 C -0.131 4.131 9 C 0.165 3.835 10 N -1.020 6.020 11 S 2.612 3.388 12 O -0.954 6.954 13 O -0.954 6.954 14 C -0.579 4.579 15 C 0.082 3.918 16 C -0.164 4.164 17 C -0.164 4.164 18 C -0.502 4.502 19 H 0.058 0.942 20 C 0.065 3.935 21 N -0.884 5.884 22 Si 0.897 3.103 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 C 0.169 3.831 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.056 0.944 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.027 0.973 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.027 0.973 42 H 0.096 0.904 43 H 0.263 0.737 44 H 0.079 0.921 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.775 -11.886 -5.164 23.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.083 3.917 4 C -0.224 4.224 5 C -0.076 4.076 6 C -0.136 4.136 7 C -0.060 4.060 8 C -0.150 4.150 9 C 0.039 3.961 10 N -0.855 5.855 11 S 2.712 3.288 12 O -0.945 6.945 13 O -0.945 6.945 14 C -0.713 4.713 15 C 0.080 3.920 16 C -0.222 4.222 17 C -0.222 4.222 18 C -0.542 4.542 19 H 0.077 0.923 20 C -0.137 4.137 21 N -0.521 5.521 22 Si 0.724 3.276 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.203 1.203 26 C 0.044 3.956 27 H 0.074 0.926 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.149 0.851 31 H 0.147 0.853 32 H 0.152 0.848 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.114 0.886 38 H 0.046 0.954 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.046 0.954 42 H 0.115 0.885 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.992 -11.622 -6.008 23.062 hybrid contribution -0.340 0.126 1.758 1.795 sum -19.332 -11.496 -4.250 22.890 Atomic orbital electron populations 1.23061 0.78275 1.03976 1.01414 1.86063 1.21425 1.26744 1.88792 1.18756 0.91931 0.84227 0.96788 1.21110 1.00001 0.91933 1.09324 1.20257 0.92399 0.97476 0.97468 1.20356 0.93758 0.95348 1.04184 1.20152 0.95540 0.92748 0.97572 1.19592 0.91274 0.97335 1.06761 1.19946 0.92402 0.80645 1.03084 1.58841 1.20105 1.15233 1.91274 1.05385 0.71052 0.72935 0.79399 1.93543 1.81618 1.43818 1.75479 1.93546 1.57929 1.67553 1.75426 1.30570 1.10261 1.10073 1.20389 1.17950 0.85879 0.90273 0.97943 1.22281 1.03464 0.99950 0.96482 1.22287 1.03461 1.00011 0.96442 1.20891 1.09547 1.33920 0.89823 0.92334 1.24941 0.95943 0.95257 0.97587 1.69790 1.14863 1.35233 1.32261 0.86585 0.77715 0.78238 0.85019 1.20259 1.21165 1.20281 1.19883 0.79352 0.93761 1.02653 0.92595 0.88217 0.92577 0.85068 0.85285 0.84755 0.89322 0.89852 0.86258 0.86284 0.88608 0.95377 0.94406 0.94389 0.95404 0.88540 0.92651 0.90315 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.98 10.50 -19.42 -0.20 -3.18 16 3 C 0.13 1.31 6.68 -39.24 -0.26 1.05 16 4 C -0.20 -1.83 9.04 -39.46 -0.36 -2.19 16 5 C -0.06 -0.55 10.04 -39.56 -0.40 -0.95 16 6 C -0.13 -1.57 6.22 -104.53 -0.65 -2.22 16 7 C -0.06 -0.70 6.21 -104.58 -0.65 -1.35 16 8 C -0.13 -1.42 9.99 -39.39 -0.39 -1.81 16 9 C 0.16 2.13 6.94 -5.07 -0.04 2.09 16 10 N -1.02 -15.22 3.64 -116.65 -0.42 -15.64 16 11 S 2.61 48.99 4.71 -107.50 -0.51 48.48 16 12 O -0.95 -19.94 15.27 -57.54 -0.88 -20.82 16 13 O -0.95 -19.96 15.27 -57.54 -0.88 -20.84 16 14 C -0.58 -11.28 5.12 37.16 0.19 -11.09 16 15 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 16 C -0.16 -4.01 7.78 37.16 0.29 -3.72 16 17 C -0.16 -4.03 7.77 37.16 0.29 -3.74 16 18 C -0.50 -13.14 8.01 -34.44 -0.28 -13.41 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 21 N -0.88 -24.02 9.35 55.43 0.52 -23.50 16 22 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 26 C 0.17 2.16 6.94 -5.08 -0.04 2.13 16 27 H 0.06 0.24 7.66 -51.93 -0.40 -0.15 16 28 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 30 H 0.13 0.83 6.31 -52.49 -0.33 0.50 16 31 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 32 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 36 H 0.12 2.11 8.14 -51.92 -0.42 1.68 16 37 H 0.10 2.52 6.08 -51.93 -0.32 2.21 16 38 H 0.03 0.65 5.46 -51.92 -0.28 0.37 16 39 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 42 H 0.10 2.55 6.06 -51.93 -0.31 2.23 16 43 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 44 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -32.27 365.95 -9.86 -42.13 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.52 Total: 2.85 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: -1.47 Total: -30.57 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.09 Total: -39.14 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -1.96 Total: -44.85 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 48.99 SS G_CDS: -0.51 Total: 48.48 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.27 -9.86 -42.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594481083.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.393 kcal (2) G-P(sol) polarization free energy of solvation -32.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds