Wall clock time and date at job start Tue Mar 31 2020 22:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35899 * 116.99786 * 2 1 4 4 C 1.38753 * 120.08185 * 0.02562 * 3 2 1 5 5 C 1.38048 * 119.90851 * 179.97438 * 4 3 2 6 6 C 1.38494 * 120.17529 * 359.96495 * 5 4 3 7 7 C 1.38104 * 120.02449 * 0.03506 * 6 5 4 8 8 C 1.38366 * 119.99192 * 359.97438 * 7 6 5 9 9 C 1.50795 * 108.86101 * 179.76136 * 7 6 5 10 10 N 1.46634 * 107.69879 * 0.39403 * 9 7 6 11 11 S 1.65597 * 126.55563 * 179.88471 * 10 9 7 12 12 O 1.42093 * 104.27757 * 153.63704 * 11 10 9 13 13 O 1.42105 * 104.27889 * 25.77745 * 11 10 9 14 14 C 1.81401 * 104.44946 * 269.70859 * 11 10 9 15 15 C 1.53001 * 109.47441 * 180.02562 * 14 11 10 16 16 C 1.52999 * 109.47159 * 59.99910 * 15 14 11 17 17 C 1.53006 * 109.46578 * 299.99882 * 15 14 11 18 18 C 1.50697 * 109.46995 * 180.02562 * 15 14 11 19 19 H 1.07991 * 120.00449 * 359.72153 * 18 15 14 20 20 C 1.37885 * 119.99686 * 179.97438 * 18 15 14 21 21 N 1.31516 * 119.99913 * 359.72095 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.72528 * 20 18 15 23 23 H 1.48498 * 109.47416 * 59.99812 * 22 20 18 24 24 H 1.48508 * 109.46609 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46903 * 299.99397 * 22 20 18 26 26 C 1.46624 * 106.88598 * 359.61705 * 10 9 7 27 27 H 1.08997 * 109.47416 * 59.99801 * 1 2 3 28 28 H 1.08996 * 109.47010 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46880 * 299.99634 * 1 2 3 30 30 H 1.07999 * 120.04375 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.91044 * 180.02562 * 5 4 3 32 32 H 1.08003 * 119.96472 * 180.02562 * 8 7 6 33 33 H 1.08993 * 109.92642 * 240.77873 * 9 7 6 34 34 H 1.09002 * 109.69571 * 119.86727 * 9 7 6 35 35 H 1.08998 * 109.47401 * 59.99842 * 14 11 10 36 36 H 1.09006 * 109.47274 * 300.00142 * 14 11 10 37 37 H 1.08997 * 109.47084 * 180.02562 * 16 15 14 38 38 H 1.09007 * 109.46899 * 300.00470 * 16 15 14 39 39 H 1.08993 * 109.47037 * 60.00122 * 16 15 14 40 40 H 1.08998 * 109.47109 * 299.99589 * 17 15 14 41 41 H 1.08994 * 109.47204 * 59.99946 * 17 15 14 42 42 H 1.09006 * 109.46531 * 179.97438 * 17 15 14 43 43 H 0.97000 * 119.99651 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.81228 * 119.78959 * 26 10 9 45 45 H 1.08995 * 109.81227 * 240.69270 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2918 2.3756 0.0005 5 6 1.9222 3.6038 0.0011 6 6 3.3053 3.6763 0.0018 7 6 4.0580 2.5185 0.0013 8 6 3.4303 1.2854 0.0005 9 6 5.5201 2.8876 -0.0037 10 7 5.6104 4.3511 0.0035 11 16 6.9989 5.2536 0.0043 12 8 6.6186 6.4821 -0.5999 13 8 7.9670 4.4079 -0.6014 14 6 7.3782 5.4989 1.7612 15 6 8.6558 6.3299 1.8960 16 6 8.4533 7.6891 1.2233 17 6 9.8158 5.5948 1.2215 18 6 8.9712 6.5331 3.3555 19 1 8.3227 6.1155 4.1113 20 6 10.0849 7.2567 3.7259 21 7 10.8750 7.7648 2.8054 22 14 10.4717 7.5150 5.5350 23 1 10.6644 6.1979 6.1931 24 1 11.7124 8.3206 5.6657 25 1 9.3454 8.2328 6.1843 26 6 4.2363 4.8626 0.0032 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2132 2.3214 0.0005 31 1 1.3353 4.5104 0.0019 32 1 4.0194 0.3802 0.0005 33 1 6.0000 2.4921 -0.8988 34 1 6.0040 2.4833 0.8854 35 1 7.5220 4.5306 2.2405 36 1 6.5519 6.0229 2.2416 37 1 9.3636 8.2810 1.3190 38 1 8.2253 7.5417 0.1676 39 1 7.6269 8.2128 1.7038 40 1 9.9600 4.6265 1.7008 41 1 9.5879 5.4474 0.1659 42 1 10.7259 6.1871 1.3172 43 1 11.6587 8.2735 3.0659 44 1 4.0661 5.4647 0.8957 45 1 4.0670 5.4662 -0.8885 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594481083.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:59 Heat of formation + Delta-G solvation = -88.681045 kcal Electronic energy + Delta-G solvation = -27686.539706 eV Core-core repulsion = 23796.244541 eV Total energy + Delta-G solvation = -3890.295164 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.54611 -39.76443 -38.21181 -38.14799 -36.99571 -36.59735 -33.63833 -32.62278 -31.09221 -29.32188 -28.37413 -27.69758 -27.48464 -27.25242 -25.42206 -22.62166 -22.11667 -21.32653 -20.04201 -18.89643 -18.71502 -17.91176 -17.32683 -17.29952 -16.94085 -16.65802 -16.58229 -16.35615 -16.08480 -15.32656 -14.87560 -14.85924 -14.62793 -14.43585 -14.32755 -14.02866 -13.90819 -13.79364 -13.45826 -13.40010 -13.13953 -12.93152 -12.88209 -12.80721 -12.68851 -12.59192 -12.49899 -12.18915 -12.17571 -12.03692 -11.91920 -11.65815 -11.57451 -11.40452 -10.69836 -10.41276 -10.26241 -9.74410 -8.99925 -8.03207 -6.21894 -0.78473 0.25334 0.36669 1.45668 1.45965 1.53240 1.66572 2.28880 2.44236 2.65549 2.82877 2.99296 3.19365 3.42187 3.58792 3.90792 3.96992 4.11478 4.16488 4.26621 4.32813 4.41991 4.44794 4.48227 4.53875 4.58444 4.59513 4.69143 4.78669 4.83833 4.85491 4.92132 4.97963 5.03633 5.14191 5.15406 5.18552 5.33666 5.37901 5.50590 5.63925 5.64411 5.68341 5.97203 6.10718 6.33470 6.43733 6.82334 7.46261 8.96522 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.002701 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.140168 B =10364.211837 C =10868.074815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.123 3.877 4 C -0.200 4.200 5 C -0.055 4.055 6 C -0.149 4.149 7 C -0.070 4.070 8 C -0.143 4.143 9 C 0.156 3.844 10 N -1.018 6.018 11 S 2.635 3.365 12 O -0.978 6.978 13 O -0.980 6.980 14 C -0.582 4.582 15 C 0.069 3.931 16 C -0.160 4.160 17 C -0.161 4.161 18 C -0.518 4.518 19 H 0.063 0.937 20 C 0.018 3.982 21 N -0.907 5.907 22 Si 0.955 3.045 23 H -0.272 1.272 24 H -0.287 1.287 25 H -0.272 1.272 26 C 0.160 3.840 27 H 0.067 0.933 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.161 0.839 31 H 0.155 0.845 32 H 0.140 0.860 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.071 0.929 38 H 0.033 0.967 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.032 0.968 42 H 0.072 0.928 43 H 0.262 0.738 44 H 0.093 0.907 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.473 -12.879 -4.366 26.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.077 3.923 4 C -0.218 4.218 5 C -0.073 4.073 6 C -0.151 4.151 7 C -0.072 4.072 8 C -0.162 4.162 9 C 0.031 3.969 10 N -0.855 5.855 11 S 2.735 3.265 12 O -0.969 6.969 13 O -0.970 6.970 14 C -0.715 4.715 15 C 0.067 3.933 16 C -0.218 4.218 17 C -0.219 4.219 18 C -0.557 4.557 19 H 0.081 0.919 20 C -0.182 4.182 21 N -0.546 5.546 22 Si 0.781 3.219 23 H -0.198 1.198 24 H -0.213 1.213 25 H -0.197 1.197 26 C 0.036 3.964 27 H 0.086 0.914 28 H 0.135 0.865 29 H 0.086 0.914 30 H 0.178 0.822 31 H 0.173 0.827 32 H 0.158 0.842 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.111 0.889 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -21.698 -12.618 -5.205 25.634 hybrid contribution 0.370 0.343 1.465 1.549 sum -21.328 -12.275 -3.740 24.891 Atomic orbital electron populations 1.23374 0.76166 1.05640 1.02493 1.86048 1.23651 1.26478 1.88585 1.18915 0.91900 0.85110 0.96343 1.21442 1.01449 0.91104 1.07815 1.20570 0.91658 0.98844 0.96272 1.20376 0.94616 0.94439 1.05679 1.20056 0.94771 0.93421 0.98945 1.19725 0.92097 0.97218 1.07197 1.20124 0.93782 0.79282 1.03698 1.58374 1.20102 1.16148 1.90898 1.04352 0.71147 0.72313 0.78646 1.93503 1.82188 1.45355 1.75825 1.93505 1.59665 1.68037 1.75808 1.30495 1.08684 1.10458 1.21866 1.17942 0.87759 0.90631 0.96964 1.22214 1.02371 1.00216 0.97025 1.22223 1.02900 0.99772 0.96984 1.21240 1.09651 1.33777 0.91025 0.91911 1.25677 0.96035 0.95252 1.01195 1.69933 1.15100 1.35700 1.33833 0.85668 0.77407 0.78170 0.80700 1.19751 1.21289 1.19709 1.20094 0.78324 0.94619 1.03411 0.91437 0.86479 0.91450 0.82179 0.82749 0.84186 0.89530 0.88655 0.84529 0.84432 0.90976 0.94862 0.93938 0.94028 0.94899 0.90894 0.92867 0.88923 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.25 16 2 O -0.33 -5.57 10.50 -92.42 -0.97 -6.54 16 3 C 0.12 2.26 6.68 22.49 0.15 2.41 16 4 C -0.20 -2.96 9.04 22.35 0.20 -2.76 16 5 C -0.06 -0.90 10.04 22.29 0.22 -0.67 16 6 C -0.15 -3.23 6.22 -19.80 -0.12 -3.35 16 7 C -0.07 -1.60 6.21 -19.84 -0.12 -1.73 16 8 C -0.14 -2.95 9.99 22.40 0.22 -2.73 16 9 C 0.16 3.92 6.94 85.64 0.59 4.51 16 10 N -1.02 -29.46 3.64 -522.97 -1.90 -31.37 16 11 S 2.64 97.59 4.71 -56.49 -0.27 97.32 16 12 O -0.98 -40.62 15.27 -127.65 -1.95 -42.57 16 13 O -0.98 -40.99 15.27 -127.65 -1.95 -42.94 16 14 C -0.58 -22.09 5.12 71.98 0.37 -21.72 16 15 C 0.07 3.33 0.52 -52.93 -0.03 3.31 16 16 C -0.16 -7.93 7.78 71.98 0.56 -7.37 16 17 C -0.16 -7.99 7.77 71.98 0.56 -7.43 16 18 C -0.52 -26.87 8.01 25.60 0.21 -26.66 16 19 H 0.06 3.12 7.74 -2.92 -0.02 3.10 16 20 C 0.02 0.95 5.15 84.66 0.44 1.38 16 21 N -0.91 -50.11 9.35 21.45 0.20 -49.91 16 22 Si 0.95 42.02 29.54 68.60 2.03 44.05 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 26 C 0.16 3.88 6.94 85.64 0.59 4.47 16 27 H 0.07 0.37 7.66 -2.39 -0.02 0.35 16 28 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.07 0.38 7.66 -2.39 -0.02 0.36 16 30 H 0.16 1.36 6.31 -2.91 -0.02 1.34 16 31 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 32 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 33 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.14 4.65 8.14 -2.39 -0.02 4.63 16 36 H 0.14 4.64 8.14 -2.39 -0.02 4.62 16 37 H 0.07 3.89 6.08 -2.39 -0.01 3.87 16 38 H 0.03 1.56 5.46 -2.38 -0.01 1.55 16 39 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.03 1.55 5.46 -2.39 -0.01 1.54 16 42 H 0.07 3.95 6.06 -2.38 -0.01 3.93 16 43 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 44 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -68.93 365.95 1.14 -67.78 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 1.00 Total: 21.25 kcal Atomic # 6 Polarization: -62.03 SS G_CDS: 4.96 Total: -57.08 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -1.70 Total: -81.27 kcal Atomic # 8 Polarization: -87.18 SS G_CDS: -4.87 Total: -92.04 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: 97.59 SS G_CDS: -0.27 Total: 97.32 kcal Total: -68.93 1.14 -67.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594481083.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.897 kcal (2) G-P(sol) polarization free energy of solvation -68.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds