Wall clock time and date at job start Tue Mar 31 2020 23:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 110.77400 * 2 1 4 4 C 1.54327 * 110.84884 * 236.93419 * 2 1 3 5 5 N 1.47028 * 107.26121 * 219.67269 * 4 2 1 6 6 S 1.65601 * 125.64496 * 178.85012 * 5 4 2 7 7 O 1.42104 * 106.40132 * 156.15049 * 6 5 4 8 8 O 1.42094 * 106.40559 * 23.23106 * 6 5 4 9 9 C 1.76204 * 107.21888 * 269.68740 * 6 5 4 10 10 C 1.38657 * 119.87755 * 270.02548 * 9 6 5 11 11 C 1.38606 * 120.50257 * 179.97438 * 10 9 6 12 12 C 1.37648 * 120.24942 * 359.75756 * 11 10 9 13 13 C 1.40695 * 119.73846 * 0.49570 * 12 11 10 14 14 C 1.41402 * 120.24440 * 179.76200 * 13 12 11 15 15 H 1.08002 * 120.00094 * 206.19277 * 14 13 12 16 16 C 1.39941 * 119.99477 * 26.18565 * 14 13 12 17 17 N 1.30823 * 119.99802 * 203.54236 * 16 14 13 18 18 Si 1.86797 * 120.00385 * 23.54251 * 16 14 13 19 19 H 1.48506 * 109.47169 * 263.26711 * 18 16 14 20 20 H 1.48497 * 109.47041 * 23.26723 * 18 16 14 21 21 H 1.48504 * 109.47213 * 143.26431 * 18 16 14 22 22 C 1.37596 * 119.87181 * 89.99886 * 9 6 5 23 23 C 1.47420 * 108.70472 * 358.58020 * 5 4 2 24 24 C 1.54912 * 104.83004 * 24.36163 * 23 5 4 25 25 C 1.53002 * 111.00586 * 81.06106 * 24 23 5 26 26 C 1.52998 * 111.00211 * 204.87543 * 24 23 5 27 27 O 1.42899 * 109.47344 * 298.54126 * 26 24 23 28 28 H 1.08995 * 109.46758 * 296.76289 * 1 2 3 29 29 H 1.08996 * 109.47116 * 56.76372 * 1 2 3 30 30 H 1.09001 * 109.46838 * 176.76374 * 1 2 3 31 31 H 1.08994 * 109.99436 * 100.19964 * 4 2 1 32 32 H 1.08998 * 109.78012 * 339.02374 * 4 2 1 33 33 H 1.08004 * 119.74423 * 359.97438 * 10 9 6 34 34 H 1.08002 * 119.87729 * 180.02562 * 11 10 9 35 35 H 1.07991 * 120.13077 * 180.27415 * 12 11 10 36 36 H 0.97001 * 120.00453 * 353.16402 * 17 16 14 37 37 H 1.08000 * 120.13025 * 359.97438 * 22 9 6 38 38 H 1.08998 * 110.36476 * 143.19116 * 23 5 4 39 39 H 1.08991 * 110.37147 * 265.51974 * 23 5 4 40 40 H 1.08993 * 109.46985 * 61.45441 * 25 24 23 41 41 H 1.09005 * 109.47035 * 181.45516 * 25 24 23 42 42 H 1.08995 * 109.47254 * 301.45297 * 25 24 23 43 43 H 1.08999 * 109.47151 * 58.54852 * 26 24 23 44 44 H 1.09011 * 109.46833 * 178.54588 * 26 24 23 45 45 H 0.96700 * 113.99857 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0793 -0.7869 -1.2086 5 7 3.2446 -1.5507 -0.7389 6 16 4.1634 -2.5740 -1.6614 7 8 5.4360 -2.6467 -1.0334 8 8 3.9850 -2.1669 -3.0111 9 6 3.4499 -4.1795 -1.5274 10 6 3.8679 -5.0395 -0.5233 11 6 3.3151 -6.3051 -0.4056 12 6 2.3396 -6.7201 -1.2836 13 6 1.9116 -5.8579 -2.3097 14 6 0.9138 -6.2751 -3.2206 15 1 0.8739 -5.8470 -4.2113 16 6 -0.0220 -7.2428 -2.8383 17 7 -0.6298 -7.9602 -3.7479 18 14 -0.4032 -7.5104 -1.0293 19 1 0.4009 -8.6490 -0.5171 20 1 -0.0653 -6.2826 -0.2654 21 1 -1.8482 -7.8122 -0.8673 22 6 2.4797 -4.5749 -2.4193 23 6 3.4634 -1.2496 0.6875 24 6 2.0790 -0.7954 1.2138 25 6 1.1894 -1.9999 1.5278 26 6 2.2278 0.1073 2.4401 27 8 2.8705 -0.6180 3.4904 28 1 -0.3633 0.4627 0.9176 29 1 -0.3633 0.5632 -0.8595 30 1 -0.3633 -1.0261 -0.0580 31 1 2.3815 -0.0969 -1.9964 32 1 1.3156 -1.4686 -1.5828 33 1 4.6301 -4.7207 0.1724 34 1 3.6479 -6.9665 0.3807 35 1 1.9071 -7.7049 -1.1874 36 1 -0.5078 -7.7559 -4.6882 37 1 2.1549 -3.9032 -3.2002 38 1 3.7960 -2.1425 1.2169 39 1 4.1932 -0.4478 0.7985 40 1 1.6554 -2.6023 2.3075 41 1 0.2149 -1.6523 1.8708 42 1 1.0641 -2.6032 0.6287 43 1 2.8289 0.9783 2.1793 44 1 1.2422 0.4326 2.7735 45 1 2.9976 -0.1064 4.3010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595384126.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:09 Heat of formation + Delta-G solvation = -114.863215 kcal Electronic energy + Delta-G solvation = -28802.593429 eV Core-core repulsion = 24911.162921 eV Total energy + Delta-G solvation = -3891.430508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.83772 -37.89982 -36.78401 -36.57848 -35.39999 -33.90593 -33.15072 -31.13293 -30.54219 -30.13901 -27.02308 -26.20084 -25.37533 -25.04145 -22.36496 -21.42753 -20.74743 -19.04112 -18.91661 -18.36151 -17.43731 -17.07574 -16.62526 -16.00043 -15.41850 -15.24492 -15.01961 -14.48863 -14.20980 -13.97724 -13.78289 -13.56154 -13.33844 -13.11884 -12.87331 -12.77752 -12.31927 -12.22472 -12.18574 -11.98556 -11.82659 -11.77358 -11.67415 -11.66613 -11.56724 -11.09863 -10.87586 -10.76551 -10.61602 -10.57477 -10.51245 -10.22558 -10.15356 -10.02375 -9.57886 -9.20743 -8.77933 -8.26779 -7.99815 -7.41205 -4.69512 0.83860 1.92636 2.47344 3.07270 3.22745 3.37258 3.42061 3.87510 3.89102 4.14727 4.24035 4.31958 4.48133 4.74329 4.88924 5.01707 5.06465 5.14630 5.17739 5.25565 5.31775 5.43783 5.52079 5.62032 5.73652 5.81587 5.82439 5.88978 5.92272 6.02670 6.04628 6.11096 6.15823 6.22208 6.27872 6.43148 6.46752 6.48368 6.74643 6.96816 7.17773 7.37418 7.42106 7.42598 7.51085 7.67849 8.21515 8.32867 8.57893 9.84334 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011999 B = 0.004531 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.018234 B = 6178.167338 C = 6879.259350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 H 0.084 0.916 4 C 0.125 3.875 5 N -1.013 6.013 6 S 2.702 3.298 7 O -0.967 6.967 8 O -0.966 6.966 9 C -0.621 4.621 10 C -0.160 4.160 11 C -0.088 4.088 12 C -0.202 4.202 13 C 0.080 3.920 14 C -0.514 4.514 15 H 0.081 0.919 16 C 0.044 3.956 17 N -0.805 5.805 18 Si 1.068 2.932 19 H -0.275 1.275 20 H -0.261 1.261 21 H -0.286 1.286 22 C -0.112 4.112 23 C 0.141 3.859 24 C -0.068 4.068 25 C -0.135 4.135 26 C 0.094 3.906 27 O -0.567 6.567 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.289 0.711 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.047 0.953 44 H 0.049 0.951 45 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.452 15.360 12.033 19.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.102 0.898 4 C 0.000 4.000 5 N -0.850 5.850 6 S 2.799 3.201 7 O -0.957 6.957 8 O -0.956 6.956 9 C -0.712 4.712 10 C -0.181 4.181 11 C -0.108 4.108 12 C -0.222 4.222 13 C 0.075 3.925 14 C -0.542 4.542 15 H 0.099 0.901 16 C -0.177 4.177 17 N -0.427 5.427 18 Si 0.893 3.107 19 H -0.202 1.202 20 H -0.185 1.185 21 H -0.213 1.213 22 C -0.133 4.133 23 C 0.016 3.984 24 C -0.069 4.069 25 C -0.192 4.192 26 C 0.015 3.985 27 O -0.372 6.372 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.128 0.872 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.101 0.899 37 H 0.132 0.868 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 0.351 14.108 11.928 18.478 hybrid contribution 0.367 0.728 -0.697 1.073 sum 0.718 14.836 11.231 18.622 Atomic orbital electron populations 1.21853 0.93678 1.03037 1.01787 1.22223 0.96439 0.98873 0.93362 0.89776 1.21779 0.87344 0.94615 0.96287 1.58660 1.45124 1.59524 1.21665 1.01394 0.72901 0.73471 0.72338 1.93520 1.37711 1.87307 1.77184 1.93528 1.86317 1.82356 1.33425 1.30020 1.13014 1.21278 1.06937 1.20035 1.03296 0.95364 0.99364 1.20703 0.96549 0.95497 0.98021 1.21279 1.01202 0.99372 1.00339 1.17785 0.92651 0.90383 0.91633 1.20664 1.11497 1.21402 1.00624 0.90141 1.27295 0.92543 0.89953 1.07911 1.70513 1.38516 1.29354 1.04303 0.83658 0.76160 0.78455 0.72427 1.20171 1.18516 1.21277 1.20833 0.97427 0.96653 0.98383 1.21907 0.95885 1.01197 0.79453 1.21811 0.95953 0.96285 0.92898 1.21744 0.98379 0.96540 1.02537 1.22092 0.96023 0.93096 0.87247 1.86533 1.82069 1.43101 1.25479 0.92347 0.92213 0.91366 0.91056 0.90961 0.87186 0.87808 0.87450 0.89911 0.86771 0.90062 0.91573 0.91710 0.92443 0.91572 0.93516 0.93305 0.77647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.17 37.16 0.30 -0.95 16 2 C -0.09 -0.87 2.87 -88.78 -0.25 -1.13 16 3 H 0.08 0.68 8.02 -51.93 -0.42 0.27 16 4 C 0.13 1.62 6.23 -3.06 -0.02 1.60 16 5 N -1.01 -15.51 3.68 -111.42 -0.41 -15.92 16 6 S 2.70 51.86 5.93 -107.50 -0.64 51.22 16 7 O -0.97 -19.98 16.85 -57.17 -0.96 -20.95 16 8 O -0.97 -20.49 16.84 -57.17 -0.96 -21.45 16 9 C -0.62 -13.41 5.97 -39.66 -0.24 -13.64 16 10 C -0.16 -3.38 9.53 -39.29 -0.37 -3.75 16 11 C -0.09 -1.89 10.02 -39.66 -0.40 -2.29 16 12 C -0.20 -4.78 7.35 -38.87 -0.29 -5.07 16 13 C 0.08 2.00 5.15 -106.82 -0.55 1.45 16 14 C -0.51 -13.49 9.40 -37.74 -0.35 -13.84 16 15 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 16 C 0.04 1.12 5.34 -17.34 -0.09 1.03 16 17 N -0.81 -20.97 13.65 55.55 0.76 -20.22 16 18 Si 1.07 23.25 24.98 -169.99 -4.25 19.01 16 19 H -0.28 -5.71 6.68 56.52 0.38 -5.34 16 20 H -0.26 -5.59 6.99 56.52 0.40 -5.19 16 21 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 22 C -0.11 -2.63 9.26 -38.87 -0.36 -2.99 16 23 C 0.14 1.88 5.66 -2.53 -0.01 1.87 16 24 C -0.07 -0.73 0.56 -152.36 -0.09 -0.82 16 25 C -0.13 -1.64 7.20 37.16 0.27 -1.37 16 26 C 0.09 0.78 6.00 37.16 0.22 1.00 16 27 O -0.57 -5.14 12.97 -35.23 -0.46 -5.60 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.67 6.70 -51.93 -0.35 0.32 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.97 7.77 -51.93 -0.40 0.57 16 33 H 0.11 2.11 7.60 -52.48 -0.40 1.72 16 34 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 35 H 0.11 2.47 4.67 -52.49 -0.25 2.23 16 36 H 0.29 7.33 8.73 -40.82 -0.36 6.98 16 37 H 0.11 2.60 7.60 -52.49 -0.40 2.20 16 38 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16 39 H 0.07 0.81 8.04 -51.93 -0.42 0.39 16 40 H 0.06 0.84 7.91 -51.93 -0.41 0.43 16 41 H 0.06 0.60 7.18 -51.93 -0.37 0.22 16 42 H 0.07 0.94 7.68 -51.93 -0.40 0.54 16 43 H 0.05 0.33 8.11 -51.93 -0.42 -0.09 16 44 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 45 H 0.38 1.66 9.12 45.56 0.42 2.08 16 LS Contribution 370.29 15.07 5.58 5.58 Total: -1.00 -31.63 370.29 -9.53 -41.15 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.95 Total: 6.09 kcal Atomic # 6 Polarization: -36.69 SS G_CDS: -2.23 Total: -38.92 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.35 Total: -36.14 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: -2.38 Total: -47.99 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -4.25 Total: 19.01 kcal Atomic # 16 Polarization: 51.86 SS G_CDS: -0.64 Total: 51.22 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.63 -9.53 -41.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595384126.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.712 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds