Wall clock time and date at job start Tue Mar 31 2020 23:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 110.78487 * 2 1 4 4 C 1.54325 * 110.71725 * 123.24175 * 2 1 3 5 5 N 1.47019 * 107.27394 * 140.55387 * 4 2 1 6 6 S 1.65596 * 125.65212 * 181.02207 * 5 4 2 7 7 O 1.42103 * 106.39974 * 23.57987 * 6 5 4 8 8 O 1.42093 * 106.40381 * 156.50393 * 6 5 4 9 9 C 1.76204 * 107.21851 * 270.04586 * 6 5 4 10 10 C 1.38652 * 119.88109 * 89.99717 * 9 6 5 11 11 C 1.38606 * 120.50701 * 179.97438 * 10 9 6 12 12 C 1.37638 * 120.24691 * 0.02562 * 11 10 9 13 13 C 1.40701 * 119.74202 * 359.97438 * 12 11 10 14 14 C 1.41403 * 120.24119 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99839 * 150.24210 * 14 13 12 16 16 C 1.39944 * 119.99993 * 330.23277 * 14 13 12 17 17 N 1.30829 * 119.99592 * 161.72036 * 16 14 13 18 18 Si 1.86801 * 120.00280 * 341.72757 * 16 14 13 19 19 H 1.48494 * 109.47343 * 95.40608 * 18 16 14 20 20 H 1.48493 * 109.46797 * 215.40780 * 18 16 14 21 21 H 1.48503 * 109.46984 * 335.40611 * 18 16 14 22 22 C 1.37598 * 119.87047 * 269.72424 * 9 6 5 23 23 C 1.47426 * 108.70020 * 1.05773 * 5 4 2 24 24 C 1.54903 * 104.83407 * 335.87077 * 23 5 4 25 25 C 1.52996 * 111.00821 * 278.93444 * 24 23 5 26 26 C 1.53006 * 111.00480 * 155.12152 * 24 23 5 27 27 O 1.42896 * 109.47135 * 64.58045 * 26 24 23 28 28 H 1.08998 * 109.47479 * 183.23561 * 1 2 3 29 29 H 1.09003 * 109.46969 * 303.23939 * 1 2 3 30 30 H 1.09004 * 109.46787 * 63.23849 * 1 2 3 31 31 H 1.09002 * 109.88428 * 21.13682 * 4 2 1 32 32 H 1.09000 * 109.87862 * 259.97355 * 4 2 1 33 33 H 1.08003 * 119.74627 * 359.95599 * 10 9 6 34 34 H 1.07997 * 119.87725 * 180.02562 * 11 10 9 35 35 H 1.07995 * 120.13314 * 179.97438 * 12 11 10 36 36 H 0.97003 * 119.99521 * 180.02562 * 17 16 14 37 37 H 1.07996 * 120.13247 * 359.97438 * 22 9 6 38 38 H 1.08998 * 110.36748 * 217.02959 * 23 5 4 39 39 H 1.09002 * 110.45654 * 94.75715 * 23 5 4 40 40 H 1.09001 * 109.46779 * 58.53969 * 25 24 23 41 41 H 1.08999 * 109.46833 * 298.54991 * 25 24 23 42 42 H 1.08995 * 109.47507 * 178.54142 * 25 24 23 43 43 H 1.08995 * 109.46768 * 184.58484 * 26 24 23 44 44 H 1.09005 * 109.46868 * 304.58235 * 26 24 23 45 45 H 0.96700 * 114.00238 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0760 -0.7913 1.2073 5 7 3.2444 -1.5509 0.7391 6 16 4.1632 -2.5743 1.6615 7 8 3.3358 -2.9973 2.7365 8 8 4.7869 -3.4772 0.7588 9 6 5.4555 -1.6135 2.3766 10 6 5.2641 -1.0060 3.6082 11 6 6.2721 -0.2478 4.1830 12 6 7.4760 -0.0895 3.5349 13 6 7.6814 -0.7013 2.2847 14 6 8.9143 -0.5461 1.6099 15 1 9.2736 -1.3264 0.9552 16 6 9.6689 0.6186 1.7901 17 7 10.9386 0.6307 1.4750 18 14 8.8632 2.1560 2.4808 19 1 9.0894 2.2172 3.9471 20 1 9.4555 3.3564 1.8380 21 1 7.4044 2.1163 2.2061 22 6 6.6529 -1.4735 1.7133 23 6 3.4632 -1.2499 -0.6875 24 6 2.0790 -0.7955 -1.2137 25 6 1.1893 -1.9999 -1.5278 26 6 2.2279 0.1072 -2.4401 27 8 2.8042 -0.6392 -3.5138 28 1 -0.3634 -1.0260 0.0580 29 1 -0.3633 0.5633 0.8596 30 1 -0.3633 0.4628 -0.9176 31 1 1.3129 -1.4759 1.5775 32 1 2.3740 -0.1025 1.9977 33 1 4.3224 -1.1243 4.1235 34 1 6.1122 0.2205 5.1429 35 1 8.2599 0.5020 3.9843 36 1 11.4617 1.4379 1.6003 37 1 6.8016 -1.9514 0.7564 38 1 3.7959 -2.1427 -1.2168 39 1 4.1936 -0.4487 -0.8001 40 1 1.0640 -2.6033 -0.6287 41 1 1.6553 -2.6024 -2.3075 42 1 0.2149 -1.6523 -1.8708 43 1 1.2475 0.4772 -2.7399 44 1 2.8748 0.9495 -2.1948 45 1 2.9276 -0.1288 -4.3258 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595384128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:17 Heat of formation + Delta-G solvation = -109.952830 kcal Electronic energy + Delta-G solvation = -28454.638547 eV Core-core repulsion = 24563.420969 eV Total energy + Delta-G solvation = -3891.217578 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.85756 -37.92644 -36.77679 -36.55428 -35.38899 -33.79888 -33.17263 -31.17237 -30.73455 -30.17216 -27.11949 -26.22654 -25.42156 -25.32946 -22.38114 -21.45048 -20.92120 -18.95371 -18.87053 -18.07794 -17.39873 -17.05209 -16.39135 -16.08398 -15.42858 -15.18364 -15.04161 -14.76215 -14.52370 -13.95452 -13.79119 -13.53437 -13.20720 -13.14996 -12.92265 -12.86479 -12.34867 -12.30433 -12.26070 -12.03678 -11.90343 -11.84915 -11.73012 -11.62085 -11.48416 -11.12988 -11.04311 -10.85428 -10.81495 -10.67391 -10.52582 -10.32094 -10.11956 -10.02712 -9.77278 -9.36788 -8.77184 -8.28108 -7.89437 -7.10443 -4.65460 0.83955 1.90079 2.40085 2.96318 3.07435 3.15109 3.39198 3.81908 3.89668 4.13898 4.21005 4.32014 4.43196 4.74707 4.87718 4.99401 5.04138 5.12232 5.15191 5.25647 5.28599 5.44381 5.46364 5.55590 5.69644 5.76289 5.79352 5.80396 5.90851 5.97685 6.00177 6.00228 6.07801 6.18453 6.27184 6.33543 6.41947 6.45462 6.67968 6.85603 7.07623 7.18668 7.37824 7.46038 7.60716 7.76494 8.17271 8.41540 8.59873 9.91531 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012781 B = 0.004080 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.294938 B = 6860.831090 C = 7612.410798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.087 0.913 4 C 0.127 3.873 5 N -1.013 6.013 6 S 2.703 3.297 7 O -0.968 6.968 8 O -0.962 6.962 9 C -0.626 4.626 10 C -0.158 4.158 11 C -0.092 4.092 12 C -0.198 4.198 13 C 0.074 3.926 14 C -0.443 4.443 15 H 0.096 0.904 16 C 0.084 3.916 17 N -0.800 5.800 18 Si 0.908 3.092 19 H -0.268 1.268 20 H -0.287 1.287 21 H -0.245 1.245 22 C -0.102 4.102 23 C 0.132 3.868 24 C -0.066 4.066 25 C -0.132 4.132 26 C 0.093 3.907 27 O -0.567 6.567 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.287 0.713 37 H 0.119 0.881 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.048 0.952 44 H 0.050 0.950 45 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.012 3.992 -6.011 19.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.105 0.895 4 C 0.002 3.998 5 N -0.850 5.850 6 S 2.800 3.200 7 O -0.958 6.958 8 O -0.952 6.952 9 C -0.717 4.717 10 C -0.179 4.179 11 C -0.111 4.111 12 C -0.218 4.218 13 C 0.070 3.930 14 C -0.471 4.471 15 H 0.114 0.886 16 C -0.136 4.136 17 N -0.423 5.423 18 Si 0.734 3.266 19 H -0.194 1.194 20 H -0.214 1.214 21 H -0.168 1.168 22 C -0.123 4.123 23 C 0.006 3.994 24 C -0.068 4.068 25 C -0.189 4.189 26 C 0.014 3.986 27 O -0.372 6.372 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.129 0.871 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.098 0.902 37 H 0.137 0.863 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -17.848 2.625 -5.464 18.850 hybrid contribution 0.508 1.984 0.185 2.056 sum -17.341 4.609 -5.279 18.703 Atomic orbital electron populations 1.21837 0.93851 1.02574 1.01876 1.22242 0.96217 0.99282 0.93387 0.89475 1.21734 0.87259 0.94442 0.96378 1.58637 1.42014 1.63752 1.20572 1.01352 0.73087 0.73070 0.72460 1.93510 1.67912 1.79849 1.54560 1.93539 1.76766 1.60149 1.64790 1.30069 1.14716 1.19551 1.07366 1.20043 0.99561 1.02846 0.95436 1.20698 0.93835 0.98217 0.98382 1.21286 0.97698 1.06517 0.96307 1.17799 0.92525 0.91401 0.91313 1.19540 1.00029 1.03619 1.23943 0.88601 1.26165 0.93961 1.01130 0.92369 1.69690 1.06671 1.30303 1.35618 0.86353 0.81886 0.79332 0.79019 1.19433 1.21392 1.16783 1.20882 0.91391 1.01396 0.98645 1.22029 0.96140 1.01759 0.79425 1.21769 0.95871 0.96140 0.93023 1.21710 0.98560 0.96736 1.01889 1.22088 0.96757 0.92993 0.86738 1.86512 1.85157 1.41599 1.23973 0.91748 0.92226 0.92314 0.90997 0.91348 0.87145 0.87898 0.87616 0.90191 0.86275 0.89399 0.91251 0.92348 0.91596 0.92411 0.93385 0.93195 0.77496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.17 37.16 0.30 -0.75 16 2 C -0.09 -0.87 2.88 -88.78 -0.26 -1.12 16 3 H 0.09 0.76 8.04 -51.93 -0.42 0.35 16 4 C 0.13 1.56 6.20 -3.06 -0.02 1.54 16 5 N -1.01 -15.42 3.68 -111.42 -0.41 -15.83 16 6 S 2.70 51.40 5.93 -107.50 -0.64 50.77 16 7 O -0.97 -19.55 16.85 -57.17 -0.96 -20.51 16 8 O -0.96 -20.46 16.58 -57.17 -0.95 -21.41 16 9 C -0.63 -13.41 5.97 -39.66 -0.24 -13.65 16 10 C -0.16 -3.29 9.53 -39.29 -0.37 -3.67 16 11 C -0.09 -1.95 10.02 -39.66 -0.40 -2.35 16 12 C -0.20 -4.67 7.18 -38.87 -0.28 -4.95 16 13 C 0.07 1.85 5.11 -106.82 -0.55 1.30 16 14 C -0.44 -11.73 9.57 -37.74 -0.36 -12.09 16 15 H 0.10 2.66 8.06 -52.49 -0.42 2.23 16 16 C 0.08 2.12 5.40 -17.34 -0.09 2.03 16 17 N -0.80 -20.66 13.93 55.55 0.77 -19.88 16 18 Si 0.91 19.84 24.52 -169.99 -4.17 15.67 16 19 H -0.27 -5.67 6.71 56.52 0.38 -5.29 16 20 H -0.29 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.24 -5.43 6.86 56.52 0.39 -5.04 16 22 C -0.10 -2.40 9.26 -38.87 -0.36 -2.76 16 23 C 0.13 1.83 5.86 -2.53 -0.01 1.82 16 24 C -0.07 -0.70 0.56 -152.36 -0.09 -0.79 16 25 C -0.13 -1.36 7.17 37.16 0.27 -1.09 16 26 C 0.09 0.81 5.99 37.16 0.22 1.03 16 27 O -0.57 -5.40 12.92 -35.23 -0.46 -5.85 16 28 H 0.06 0.48 6.69 -51.93 -0.35 0.14 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.84 7.76 -51.93 -0.40 0.43 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.11 2.06 7.60 -52.48 -0.40 1.66 16 34 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 35 H 0.11 2.43 4.73 -52.49 -0.25 2.19 16 36 H 0.29 6.68 8.30 -40.82 -0.34 6.34 16 37 H 0.12 2.71 7.60 -52.49 -0.40 2.31 16 38 H 0.09 1.32 7.69 -51.93 -0.40 0.92 16 39 H 0.07 0.96 8.03 -51.93 -0.42 0.55 16 40 H 0.06 0.64 7.67 -51.93 -0.40 0.24 16 41 H 0.07 0.74 7.83 -51.93 -0.41 0.34 16 42 H 0.06 0.48 7.18 -51.93 -0.37 0.11 16 43 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.05 0.42 8.13 -51.93 -0.42 -0.01 16 45 H 0.38 1.92 9.12 45.56 0.42 2.34 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -31.76 369.02 -9.40 -41.16 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.92 Total: 5.82 kcal Atomic # 6 Polarization: -33.26 SS G_CDS: -2.23 Total: -35.49 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.36 Total: -35.71 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -2.37 Total: -47.77 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.17 Total: 15.67 kcal Atomic # 16 Polarization: 51.40 SS G_CDS: -0.64 Total: 50.77 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.76 -9.40 -41.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595384128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.792 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds