Wall clock time and date at job start Tue Mar 31 2020 23:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 110.78487 * 2 1 4 4 C 1.54325 * 110.71725 * 123.24175 * 2 1 3 5 5 N 1.47019 * 107.27394 * 140.55387 * 4 2 1 6 6 S 1.65596 * 125.65212 * 181.02207 * 5 4 2 7 7 O 1.42103 * 106.39974 * 23.57987 * 6 5 4 8 8 O 1.42093 * 106.40381 * 156.50393 * 6 5 4 9 9 C 1.76204 * 107.21851 * 270.04586 * 6 5 4 10 10 C 1.38652 * 119.88109 * 89.99717 * 9 6 5 11 11 C 1.38606 * 120.50701 * 179.97438 * 10 9 6 12 12 C 1.37638 * 120.24691 * 0.02562 * 11 10 9 13 13 C 1.40701 * 119.74202 * 359.97438 * 12 11 10 14 14 C 1.41403 * 120.24119 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99839 * 150.24210 * 14 13 12 16 16 C 1.39944 * 119.99993 * 330.23277 * 14 13 12 17 17 N 1.30829 * 119.99592 * 161.72036 * 16 14 13 18 18 Si 1.86801 * 120.00280 * 341.72757 * 16 14 13 19 19 H 1.48494 * 109.47343 * 95.40608 * 18 16 14 20 20 H 1.48493 * 109.46797 * 215.40780 * 18 16 14 21 21 H 1.48503 * 109.46984 * 335.40611 * 18 16 14 22 22 C 1.37598 * 119.87047 * 269.72424 * 9 6 5 23 23 C 1.47426 * 108.70020 * 1.05773 * 5 4 2 24 24 C 1.54903 * 104.83407 * 335.87077 * 23 5 4 25 25 C 1.52996 * 111.00821 * 278.93444 * 24 23 5 26 26 C 1.53006 * 111.00480 * 155.12152 * 24 23 5 27 27 O 1.42896 * 109.47135 * 64.58045 * 26 24 23 28 28 H 1.08998 * 109.47479 * 183.23561 * 1 2 3 29 29 H 1.09003 * 109.46969 * 303.23939 * 1 2 3 30 30 H 1.09004 * 109.46787 * 63.23849 * 1 2 3 31 31 H 1.09002 * 109.88428 * 21.13682 * 4 2 1 32 32 H 1.09000 * 109.87862 * 259.97355 * 4 2 1 33 33 H 1.08003 * 119.74627 * 359.95599 * 10 9 6 34 34 H 1.07997 * 119.87725 * 180.02562 * 11 10 9 35 35 H 1.07995 * 120.13314 * 179.97438 * 12 11 10 36 36 H 0.97003 * 119.99521 * 180.02562 * 17 16 14 37 37 H 1.07996 * 120.13247 * 359.97438 * 22 9 6 38 38 H 1.08998 * 110.36748 * 217.02959 * 23 5 4 39 39 H 1.09002 * 110.45654 * 94.75715 * 23 5 4 40 40 H 1.09001 * 109.46779 * 58.53969 * 25 24 23 41 41 H 1.08999 * 109.46833 * 298.54991 * 25 24 23 42 42 H 1.08995 * 109.47507 * 178.54142 * 25 24 23 43 43 H 1.08995 * 109.46768 * 184.58484 * 26 24 23 44 44 H 1.09005 * 109.46868 * 304.58235 * 26 24 23 45 45 H 0.96700 * 114.00238 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0760 -0.7913 1.2073 5 7 3.2444 -1.5509 0.7391 6 16 4.1632 -2.5743 1.6615 7 8 3.3358 -2.9973 2.7365 8 8 4.7869 -3.4772 0.7588 9 6 5.4555 -1.6135 2.3766 10 6 5.2641 -1.0060 3.6082 11 6 6.2721 -0.2478 4.1830 12 6 7.4760 -0.0895 3.5349 13 6 7.6814 -0.7013 2.2847 14 6 8.9143 -0.5461 1.6099 15 1 9.2736 -1.3264 0.9552 16 6 9.6689 0.6186 1.7901 17 7 10.9386 0.6307 1.4750 18 14 8.8632 2.1560 2.4808 19 1 9.0894 2.2172 3.9471 20 1 9.4555 3.3564 1.8380 21 1 7.4044 2.1163 2.2061 22 6 6.6529 -1.4735 1.7133 23 6 3.4632 -1.2499 -0.6875 24 6 2.0790 -0.7955 -1.2137 25 6 1.1893 -1.9999 -1.5278 26 6 2.2279 0.1072 -2.4401 27 8 2.8042 -0.6392 -3.5138 28 1 -0.3634 -1.0260 0.0580 29 1 -0.3633 0.5633 0.8596 30 1 -0.3633 0.4628 -0.9176 31 1 1.3129 -1.4759 1.5775 32 1 2.3740 -0.1025 1.9977 33 1 4.3224 -1.1243 4.1235 34 1 6.1122 0.2205 5.1429 35 1 8.2599 0.5020 3.9843 36 1 11.4617 1.4379 1.6003 37 1 6.8016 -1.9514 0.7564 38 1 3.7959 -2.1427 -1.2168 39 1 4.1936 -0.4487 -0.8001 40 1 1.0640 -2.6033 -0.6287 41 1 1.6553 -2.6024 -2.3075 42 1 0.2149 -1.6523 -1.8708 43 1 1.2475 0.4772 -2.7399 44 1 2.8748 0.9495 -2.1948 45 1 2.9276 -0.1288 -4.3258 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595384128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:16 Heat of formation + Delta-G solvation = -133.941949 kcal Electronic energy + Delta-G solvation = -28455.678793 eV Core-core repulsion = 24563.420969 eV Total energy + Delta-G solvation = -3892.257824 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.74633 -39.72980 -38.39197 -37.30771 -37.01859 -35.67635 -34.15203 -32.58545 -31.96805 -31.93722 -27.93213 -27.30012 -27.04664 -26.28519 -24.12217 -22.73375 -22.34394 -20.46507 -19.77726 -19.63989 -18.56530 -18.13507 -18.04057 -17.37863 -16.96594 -16.68097 -16.40933 -15.94369 -15.63752 -15.37380 -14.89679 -14.75925 -14.70899 -14.52756 -14.06306 -14.00988 -13.76865 -13.62834 -13.44244 -13.40046 -13.26725 -13.18686 -13.05816 -12.91921 -12.86488 -12.68291 -12.60099 -12.05270 -12.00118 -11.83765 -11.63020 -11.57684 -11.41684 -11.33450 -11.13395 -10.77819 -10.10166 -9.94748 -9.73921 -8.99256 -6.63793 -0.68747 0.12392 0.60814 1.20225 1.34482 1.42429 1.94977 2.04579 2.39824 2.66152 3.07376 3.22036 3.27102 3.55195 3.70628 4.01486 4.12976 4.22613 4.25474 4.27858 4.36642 4.39574 4.50327 4.55407 4.64468 4.68639 4.69883 4.72529 4.78894 4.85434 4.98051 5.02352 5.03460 5.05734 5.16674 5.19096 5.23636 5.31657 5.37452 5.38772 5.48661 5.57732 5.59753 5.71558 5.94983 6.19471 6.54255 6.64862 7.00859 8.09118 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012781 B = 0.004080 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.294938 B = 6860.831090 C = 7612.410798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 H 0.099 0.901 4 C 0.112 3.888 5 N -1.008 6.008 6 S 2.724 3.276 7 O -0.976 6.976 8 O -0.991 6.991 9 C -0.634 4.634 10 C -0.144 4.144 11 C -0.093 4.093 12 C -0.204 4.204 13 C 0.057 3.943 14 C -0.485 4.485 15 H 0.057 0.943 16 C 0.048 3.952 17 N -0.841 5.841 18 Si 0.962 3.038 19 H -0.250 1.250 20 H -0.271 1.271 21 H -0.250 1.250 22 C -0.126 4.126 23 C 0.122 3.878 24 C -0.063 4.063 25 C -0.130 4.130 26 C 0.093 3.907 27 O -0.591 6.591 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.112 0.888 36 H 0.297 0.703 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.054 0.946 45 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.647 6.343 -4.835 23.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 H 0.118 0.882 4 C -0.012 4.012 5 N -0.847 5.847 6 S 2.819 3.181 7 O -0.966 6.966 8 O -0.982 6.982 9 C -0.723 4.723 10 C -0.165 4.165 11 C -0.111 4.111 12 C -0.224 4.224 13 C 0.053 3.947 14 C -0.514 4.514 15 H 0.075 0.925 16 C -0.167 4.167 17 N -0.466 5.466 18 Si 0.784 3.216 19 H -0.175 1.175 20 H -0.197 1.197 21 H -0.174 1.174 22 C -0.147 4.147 23 C -0.003 4.003 24 C -0.065 4.065 25 C -0.187 4.187 26 C 0.015 3.985 27 O -0.400 6.400 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.160 0.840 34 H 0.165 0.835 35 H 0.129 0.871 36 H 0.108 0.892 37 H 0.126 0.874 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -21.456 4.980 -4.277 22.437 hybrid contribution 1.458 1.128 -0.183 1.853 sum -19.997 6.108 -4.460 21.380 Atomic orbital electron populations 1.21842 0.91679 1.02918 1.03384 1.22261 0.97828 0.99021 0.91012 0.88232 1.22148 0.86186 0.94819 0.98088 1.58352 1.41954 1.63718 1.20722 1.00618 0.72470 0.72893 0.72081 1.93489 1.67569 1.80247 1.55298 1.93500 1.77623 1.61674 1.65398 1.30514 1.14766 1.19142 1.07854 1.20588 1.00606 1.00665 0.94598 1.21178 0.92557 0.97644 0.99765 1.21492 0.99004 1.06217 0.95673 1.17936 0.92238 0.92321 0.92184 1.19485 1.02014 1.04231 1.25664 0.92502 1.26880 0.94182 1.03220 0.92465 1.69714 1.07778 1.31642 1.37459 0.85537 0.80464 0.76129 0.79452 1.17501 1.19727 1.17363 1.20866 0.92346 1.02444 0.98999 1.22211 0.98712 1.00793 0.78578 1.21823 0.93426 0.96809 0.94454 1.21702 0.99646 0.96421 1.00946 1.22130 0.98318 0.92251 0.85787 1.86472 1.85440 1.42878 1.25162 0.91967 0.91107 0.90512 0.90260 0.90594 0.84018 0.83544 0.87079 0.89189 0.87369 0.91497 0.91710 0.93384 0.93187 0.89842 0.90542 0.92807 0.75398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.17 71.98 0.59 -0.88 16 2 C -0.08 -1.28 2.88 -9.60 -0.03 -1.31 16 3 H 0.10 1.36 8.04 -2.39 -0.02 1.34 16 4 C 0.11 2.46 6.20 86.73 0.54 3.00 16 5 N -1.01 -29.84 3.68 -506.44 -1.87 -31.71 16 6 S 2.72 102.94 5.93 -56.49 -0.34 102.60 16 7 O -0.98 -37.90 16.85 -128.00 -2.16 -40.06 16 8 O -0.99 -43.57 16.58 -128.00 -2.12 -45.69 16 9 C -0.63 -26.88 5.97 22.22 0.13 -26.75 16 10 C -0.14 -5.60 9.53 22.46 0.21 -5.39 16 11 C -0.09 -3.63 10.02 22.22 0.22 -3.41 16 12 C -0.20 -9.38 7.18 22.73 0.16 -9.22 16 13 C 0.06 2.92 5.11 -21.29 -0.11 2.81 16 14 C -0.48 -27.31 9.57 23.46 0.22 -27.09 16 15 H 0.06 3.49 8.06 -2.91 -0.02 3.46 16 16 C 0.05 2.53 5.40 85.26 0.46 2.99 16 17 N -0.84 -45.22 13.93 21.83 0.30 -44.91 16 18 Si 0.96 40.43 24.52 68.60 1.68 42.11 16 19 H -0.25 -9.72 6.71 99.48 0.67 -9.05 16 20 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 21 H -0.25 -10.61 6.86 99.48 0.68 -9.93 16 22 C -0.13 -6.12 9.26 22.73 0.21 -5.91 16 23 C 0.12 3.39 5.86 86.85 0.51 3.89 16 24 C -0.06 -1.21 0.56 -50.79 -0.03 -1.24 16 25 C -0.13 -2.46 7.17 71.98 0.52 -1.94 16 26 C 0.09 1.39 5.99 71.98 0.43 1.82 16 27 O -0.59 -10.47 12.92 -148.98 -1.93 -12.39 16 28 H 0.06 0.70 6.69 -2.39 -0.02 0.68 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.08 1.63 7.76 -2.39 -0.02 1.62 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.14 4.65 7.60 -2.91 -0.02 4.63 16 34 H 0.15 4.47 8.06 -2.91 -0.02 4.44 16 35 H 0.11 4.93 4.73 -2.91 -0.01 4.91 16 36 H 0.30 14.19 8.30 -92.71 -0.77 13.43 16 37 H 0.11 5.33 7.60 -2.91 -0.02 5.31 16 38 H 0.07 2.11 7.69 -2.39 -0.02 2.09 16 39 H 0.06 1.83 8.03 -2.39 -0.02 1.81 16 40 H 0.05 0.99 7.67 -2.39 -0.02 0.97 16 41 H 0.05 1.10 7.83 -2.39 -0.02 1.08 16 42 H 0.08 1.14 7.18 -2.39 -0.02 1.12 16 43 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.05 0.76 8.13 -2.38 -0.02 0.74 16 45 H 0.40 3.41 9.12 -74.06 -0.68 2.74 16 Total: -1.00 -71.65 369.02 -2.11 -73.76 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.26 Total: 24.90 kcal Atomic # 6 Polarization: -72.66 SS G_CDS: 4.04 Total: -68.62 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -1.56 Total: -76.62 kcal Atomic # 8 Polarization: -91.93 SS G_CDS: -6.20 Total: -98.14 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 1.68 Total: 42.11 kcal Atomic # 16 Polarization: 102.94 SS G_CDS: -0.34 Total: 102.60 kcal Total: -71.65 -2.11 -73.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595384128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.186 kcal (2) G-P(sol) polarization free energy of solvation -71.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds