Wall clock time and date at job start Tue Mar 31 2020 23:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52713 * 1 3 3 H 1.10003 * 108.22638 * 2 1 4 4 C 1.50198 * 109.91795 * 242.19839 * 2 1 3 5 5 C 1.38588 * 118.41488 * 75.78222 * 4 2 1 6 6 C 1.38045 * 120.56740 * 180.02562 * 5 4 2 7 7 C 1.38285 * 119.65165 * 359.93261 * 6 5 4 8 8 C 1.37705 * 120.01412 * 359.97438 * 7 6 5 9 9 C 1.38302 * 121.44222 * 255.74221 * 4 2 1 10 10 O 1.36149 * 124.92402 * 359.97438 * 9 4 2 11 11 C 1.42715 * 119.60322 * 53.59499 * 10 9 4 12 12 C 1.54156 * 108.64303 * 271.91778 * 11 10 9 13 13 N 1.45709 * 107.81698 * 26.23401 * 12 11 10 14 14 S 1.66254 * 119.85789 * 244.24322 * 13 12 11 15 15 O 1.42098 * 104.27497 * 333.92848 * 14 13 12 16 16 O 1.42102 * 104.28104 * 206.06880 * 14 13 12 17 17 C 1.81404 * 104.44865 * 89.99683 * 14 13 12 18 18 C 1.53000 * 109.46946 * 180.02562 * 17 14 13 19 19 C 1.53001 * 109.46886 * 180.02562 * 18 17 14 20 20 C 1.50697 * 109.47291 * 179.97438 * 19 18 17 21 21 H 1.08006 * 119.99920 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00428 * 179.97438 * 20 19 18 23 23 N 1.31520 * 120.00162 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99868 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47023 * 90.00014 * 24 22 20 26 26 H 1.48496 * 109.47251 * 210.00457 * 24 22 20 27 27 H 1.48498 * 109.47139 * 330.00202 * 24 22 20 28 28 H 1.08995 * 109.47155 * 301.27136 * 1 2 3 29 29 H 1.09006 * 109.47077 * 61.26550 * 1 2 3 30 30 H 1.08992 * 109.47491 * 181.26519 * 1 2 3 31 31 H 1.08012 * 119.70568 * 0.24793 * 5 4 2 32 32 H 1.08022 * 120.19473 * 179.90499 * 6 5 4 33 33 H 1.07990 * 119.97477 * 179.97438 * 7 6 5 34 34 H 1.08002 * 119.68571 * 180.02562 * 8 7 6 35 35 H 1.09105 * 109.45786 * 152.32335 * 11 10 9 36 36 H 1.08899 * 109.78585 * 32.18792 * 11 10 9 37 37 H 1.09863 * 108.94418 * 268.18917 * 12 11 10 38 38 H 1.08512 * 110.82463 * 149.00875 * 12 11 10 39 39 H 1.09002 * 109.47124 * 60.00219 * 17 14 13 40 40 H 1.09001 * 109.46975 * 300.00340 * 17 14 13 41 41 H 1.09001 * 109.47194 * 299.99756 * 18 17 14 42 42 H 1.08992 * 109.47399 * 59.99928 * 18 17 14 43 43 H 1.09001 * 109.47109 * 299.99380 * 19 18 17 44 44 H 1.09002 * 109.47508 * 59.99571 * 19 18 17 45 45 H 0.96996 * 119.99309 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5271 0.0000 0.0000 3 1 1.8712 1.0448 0.0000 4 6 2.0388 -0.6586 -1.2491 5 6 1.9820 0.0498 -2.4389 6 6 2.4395 -0.5129 -3.6135 7 6 2.9600 -1.7940 -3.6011 8 6 3.0204 -2.5015 -2.4213 9 6 2.5578 -1.9404 -1.2281 10 8 2.6611 -2.7214 -0.1177 11 6 1.5065 -2.9597 0.6865 12 6 1.3951 -1.8347 1.7345 13 7 2.0554 -0.6541 1.1930 14 16 3.4130 -0.0499 1.9387 15 8 3.2847 -0.4666 3.2911 16 8 3.4180 1.3287 1.5942 17 6 4.7922 -0.9117 1.1351 18 6 6.1137 -0.4366 1.7424 19 6 7.2770 -1.1630 1.0643 20 6 8.5787 -0.6946 1.6619 21 1 8.5765 0.0474 2.4467 22 6 9.7724 -1.2132 1.2069 23 7 10.9084 -0.8040 1.7282 24 14 9.7762 -2.4971 -0.1499 25 1 9.8522 -1.8217 -1.4703 26 1 10.9503 -3.3907 0.0174 27 1 8.5289 -3.2996 -0.0755 28 1 -0.3633 0.5334 0.8783 29 1 -0.3633 0.4941 -0.9012 30 1 -0.3634 -1.0273 0.0227 31 1 1.5796 1.0521 -2.4463 32 1 2.3909 0.0442 -4.5378 33 1 3.3189 -2.2394 -4.5171 34 1 3.4283 -3.5016 -2.4176 35 1 1.6079 -3.9212 1.1922 36 1 0.6165 -2.9725 0.0591 37 1 1.9173 -2.1465 2.6494 38 1 0.3568 -1.6398 1.9823 39 1 4.7838 -0.6943 0.0671 40 1 4.6879 -1.9859 1.2880 41 1 6.2182 0.6376 1.5899 42 1 6.1219 -0.6543 2.8103 43 1 7.1727 -2.2373 1.2165 44 1 7.2686 -0.9449 -0.0037 45 1 11.7481 -1.1692 1.4083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595410627.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:56 Heat of formation + Delta-G solvation = -79.008994 kcal Electronic energy + Delta-G solvation = -28928.528007 eV Core-core repulsion = 25038.652254 eV Total energy + Delta-G solvation = -3889.875753 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.78487 -37.86857 -37.08080 -36.71939 -35.79630 -34.72472 -32.68095 -32.15636 -30.89250 -29.32045 -28.63106 -28.26914 -24.90592 -23.53917 -22.97052 -21.97844 -21.20303 -20.34221 -19.09602 -17.93632 -17.75394 -17.01053 -16.79430 -16.30611 -15.86973 -15.61867 -15.42209 -14.92906 -14.84284 -14.34439 -14.15552 -14.05242 -13.79382 -13.46206 -13.38092 -12.85009 -12.70463 -12.40576 -12.26858 -12.17384 -12.07376 -11.97895 -11.92206 -11.89784 -11.58729 -11.48644 -11.33686 -11.08517 -10.92424 -10.88742 -10.43268 -10.03523 -9.82479 -9.72364 -9.25465 -9.11753 -9.03665 -8.56447 -8.54404 -6.04563 -4.03236 0.37887 1.03116 1.11286 2.58828 3.13460 3.30325 3.37442 3.41430 3.57322 3.92217 4.18234 4.34644 4.37043 4.44708 4.62099 4.66489 4.76025 4.83375 4.90869 4.97985 5.10612 5.14837 5.19339 5.22009 5.24243 5.27868 5.30405 5.39812 5.49688 5.53004 5.71179 5.78478 5.83089 5.89734 6.11448 6.17412 6.22764 6.29471 6.37576 6.44097 6.58999 6.73852 7.20385 7.33985 7.36683 7.75958 8.52130 8.99946 9.57121 11.08800 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011776 B = 0.004366 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.078956 B = 6411.629755 C = 7650.907422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.180 3.820 3 H 0.112 0.888 4 C -0.148 4.148 5 C -0.091 4.091 6 C -0.133 4.133 7 C -0.099 4.099 8 C -0.138 4.138 9 C 0.125 3.875 10 O -0.320 6.320 11 C 0.049 3.951 12 C 0.082 3.918 13 N -0.985 5.985 14 S 2.593 3.407 15 O -0.957 6.957 16 O -0.958 6.958 17 C -0.601 4.601 18 C -0.097 4.097 19 C -0.002 4.002 20 C -0.525 4.525 21 H 0.074 0.926 22 C 0.068 3.932 23 N -0.902 5.902 24 Si 0.879 3.121 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.265 1.265 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.109 0.891 36 H 0.063 0.937 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.125 0.875 40 H 0.133 0.867 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.020 0.980 44 H 0.015 0.985 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.274 -3.528 -9.142 28.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.073 3.927 3 H 0.130 0.870 4 C -0.150 4.150 5 C -0.109 4.109 6 C -0.151 4.151 7 C -0.117 4.117 8 C -0.156 4.156 9 C 0.081 3.919 10 O -0.235 6.235 11 C -0.028 4.028 12 C -0.044 4.044 13 N -0.819 5.819 14 S 2.692 3.308 15 O -0.947 6.947 16 O -0.948 6.948 17 C -0.733 4.733 18 C -0.136 4.136 19 C -0.041 4.041 20 C -0.563 4.563 21 H 0.092 0.908 22 C -0.133 4.133 23 N -0.540 5.540 24 Si 0.706 3.294 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.189 1.189 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.127 0.873 36 H 0.081 0.919 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.143 0.857 40 H 0.152 0.848 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.039 0.961 44 H 0.033 0.967 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.966 -2.980 -8.347 27.437 hybrid contribution 0.240 -1.132 -1.303 1.743 sum -25.726 -4.112 -9.650 27.782 Atomic orbital electron populations 1.21951 0.92889 1.02649 1.03007 1.19541 0.95357 0.96949 0.80852 0.87009 1.20452 1.03938 0.94187 0.96425 1.20896 0.99059 0.99655 0.91337 1.21099 1.00048 0.95764 0.98230 1.20978 0.98396 0.94682 0.97619 1.21317 1.02714 1.00913 0.90702 1.18678 0.98374 0.89052 0.85810 1.85860 1.34683 1.66169 1.36787 1.23590 0.87831 0.98960 0.92408 1.22109 1.00305 0.84500 0.97526 1.57358 1.44436 1.40345 1.39730 1.05636 0.75215 0.75113 0.74840 1.93557 1.85281 1.83582 1.32321 1.93545 1.86015 1.30564 1.84686 1.30518 1.15082 1.14467 1.13240 1.21317 0.91003 1.01100 1.00180 1.19499 0.93092 0.95780 0.95687 1.21148 0.88968 1.24689 1.21498 0.90780 1.25008 0.95476 0.96390 0.96466 1.69917 0.97573 1.43722 1.42823 0.86792 0.77814 0.82157 0.82651 1.20242 1.21303 1.18940 0.91345 0.90902 0.92138 0.85388 0.85567 0.85532 0.85280 0.87327 0.91897 0.87974 0.89450 0.85656 0.84827 0.91273 0.91158 0.96128 0.96671 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.56 37.01 0.32 -0.76 16 2 C 0.18 1.87 2.52 -69.77 -0.18 1.70 16 3 H 0.11 1.27 6.71 -51.36 -0.34 0.93 16 4 C -0.15 -1.58 5.11 -104.71 -0.53 -2.11 16 5 C -0.09 -0.86 9.42 -39.52 -0.37 -1.23 16 6 C -0.13 -1.19 10.06 -39.64 -0.40 -1.59 16 7 C -0.10 -0.94 10.03 -39.76 -0.40 -1.33 16 8 C -0.14 -1.50 9.84 -39.22 -0.39 -1.89 16 9 C 0.13 1.44 5.80 -39.00 -0.23 1.21 16 10 O -0.32 -3.64 8.18 -20.22 -0.17 -3.81 16 11 C 0.05 0.39 6.71 37.76 0.25 0.65 16 12 C 0.08 0.74 5.69 -3.86 -0.02 0.72 16 13 N -0.98 -11.56 2.17 -108.69 -0.24 -11.79 16 14 S 2.59 40.69 5.43 -107.50 -0.58 40.10 16 15 O -0.96 -17.01 16.51 -57.54 -0.95 -17.96 16 16 O -0.96 -17.24 16.46 -57.54 -0.95 -18.19 16 17 C -0.60 -9.95 5.52 37.16 0.21 -9.74 16 18 C -0.10 -2.00 5.16 -26.73 -0.14 -2.14 16 19 C 0.00 -0.05 4.04 -27.88 -0.11 -0.16 16 20 C -0.52 -15.32 9.66 -34.44 -0.33 -15.66 16 21 H 0.07 2.31 7.99 -52.48 -0.42 1.89 16 22 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 23 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 24 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.44 8.01 -51.93 -0.42 0.03 16 30 H 0.06 0.39 6.38 -51.93 -0.33 0.06 16 31 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 32 H 0.13 0.84 8.06 -52.47 -0.42 0.42 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.11 0.66 8.15 -51.87 -0.42 0.23 16 36 H 0.06 0.42 7.28 -51.99 -0.38 0.04 16 37 H 0.10 0.99 6.82 -51.44 -0.35 0.63 16 38 H 0.09 0.58 7.27 -52.20 -0.38 0.21 16 39 H 0.13 1.99 7.97 -51.92 -0.41 1.57 16 40 H 0.13 2.04 7.65 -51.92 -0.40 1.65 16 41 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 43 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 44 H 0.01 0.36 7.57 -51.93 -0.39 -0.03 16 45 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 368.49 15.07 5.55 5.55 Total: -1.00 -36.18 368.49 -10.39 -46.57 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.75 Total: 0.05 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: -2.42 Total: -30.43 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.54 Total: -39.20 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -2.06 Total: -39.95 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Atomic # 16 Polarization: 40.69 SS G_CDS: -0.58 Total: 40.10 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.18 -10.39 -46.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595410627.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.442 kcal (2) G-P(sol) polarization free energy of solvation -36.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds