Wall clock time and date at job start Tue Mar 31 2020 23:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52713 * 1 3 3 H 1.10003 * 108.22638 * 2 1 4 4 C 1.50198 * 109.91795 * 242.19839 * 2 1 3 5 5 C 1.38588 * 118.41488 * 75.78222 * 4 2 1 6 6 C 1.38045 * 120.56740 * 180.02562 * 5 4 2 7 7 C 1.38285 * 119.65165 * 359.93261 * 6 5 4 8 8 C 1.37705 * 120.01412 * 359.97438 * 7 6 5 9 9 C 1.38302 * 121.44222 * 255.74221 * 4 2 1 10 10 O 1.36149 * 124.92402 * 359.97438 * 9 4 2 11 11 C 1.42715 * 119.60322 * 53.59499 * 10 9 4 12 12 C 1.54156 * 108.64303 * 271.91778 * 11 10 9 13 13 N 1.45709 * 107.81698 * 26.23401 * 12 11 10 14 14 S 1.66254 * 119.85789 * 244.24322 * 13 12 11 15 15 O 1.42098 * 104.27497 * 333.92848 * 14 13 12 16 16 O 1.42102 * 104.28104 * 206.06880 * 14 13 12 17 17 C 1.81404 * 104.44865 * 89.99683 * 14 13 12 18 18 C 1.53000 * 109.46946 * 180.02562 * 17 14 13 19 19 C 1.53001 * 109.46886 * 180.02562 * 18 17 14 20 20 C 1.50697 * 109.47291 * 179.97438 * 19 18 17 21 21 H 1.08006 * 119.99920 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00428 * 179.97438 * 20 19 18 23 23 N 1.31520 * 120.00162 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99868 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47023 * 90.00014 * 24 22 20 26 26 H 1.48496 * 109.47251 * 210.00457 * 24 22 20 27 27 H 1.48498 * 109.47139 * 330.00202 * 24 22 20 28 28 H 1.08995 * 109.47155 * 301.27136 * 1 2 3 29 29 H 1.09006 * 109.47077 * 61.26550 * 1 2 3 30 30 H 1.08992 * 109.47491 * 181.26519 * 1 2 3 31 31 H 1.08012 * 119.70568 * 0.24793 * 5 4 2 32 32 H 1.08022 * 120.19473 * 179.90499 * 6 5 4 33 33 H 1.07990 * 119.97477 * 179.97438 * 7 6 5 34 34 H 1.08002 * 119.68571 * 180.02562 * 8 7 6 35 35 H 1.09105 * 109.45786 * 152.32335 * 11 10 9 36 36 H 1.08899 * 109.78585 * 32.18792 * 11 10 9 37 37 H 1.09863 * 108.94418 * 268.18917 * 12 11 10 38 38 H 1.08512 * 110.82463 * 149.00875 * 12 11 10 39 39 H 1.09002 * 109.47124 * 60.00219 * 17 14 13 40 40 H 1.09001 * 109.46975 * 300.00340 * 17 14 13 41 41 H 1.09001 * 109.47194 * 299.99756 * 18 17 14 42 42 H 1.08992 * 109.47399 * 59.99928 * 18 17 14 43 43 H 1.09001 * 109.47109 * 299.99380 * 19 18 17 44 44 H 1.09002 * 109.47508 * 59.99571 * 19 18 17 45 45 H 0.96996 * 119.99309 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5271 0.0000 0.0000 3 1 1.8712 1.0448 0.0000 4 6 2.0388 -0.6586 -1.2491 5 6 1.9820 0.0498 -2.4389 6 6 2.4395 -0.5129 -3.6135 7 6 2.9600 -1.7940 -3.6011 8 6 3.0204 -2.5015 -2.4213 9 6 2.5578 -1.9404 -1.2281 10 8 2.6611 -2.7214 -0.1177 11 6 1.5065 -2.9597 0.6865 12 6 1.3951 -1.8347 1.7345 13 7 2.0554 -0.6541 1.1930 14 16 3.4130 -0.0499 1.9387 15 8 3.2847 -0.4666 3.2911 16 8 3.4180 1.3287 1.5942 17 6 4.7922 -0.9117 1.1351 18 6 6.1137 -0.4366 1.7424 19 6 7.2770 -1.1630 1.0643 20 6 8.5787 -0.6946 1.6619 21 1 8.5765 0.0474 2.4467 22 6 9.7724 -1.2132 1.2069 23 7 10.9084 -0.8040 1.7282 24 14 9.7762 -2.4971 -0.1499 25 1 9.8522 -1.8217 -1.4703 26 1 10.9503 -3.3907 0.0174 27 1 8.5289 -3.2996 -0.0755 28 1 -0.3633 0.5334 0.8783 29 1 -0.3633 0.4941 -0.9012 30 1 -0.3634 -1.0273 0.0227 31 1 1.5796 1.0521 -2.4463 32 1 2.3909 0.0442 -4.5378 33 1 3.3189 -2.2394 -4.5171 34 1 3.4283 -3.5016 -2.4176 35 1 1.6079 -3.9212 1.1922 36 1 0.6165 -2.9725 0.0591 37 1 1.9173 -2.1465 2.6494 38 1 0.3568 -1.6398 1.9823 39 1 4.7838 -0.6943 0.0671 40 1 4.6879 -1.9859 1.2880 41 1 6.2182 0.6376 1.5899 42 1 6.1219 -0.6543 2.8103 43 1 7.1727 -2.2373 1.2165 44 1 7.2686 -0.9449 -0.0037 45 1 11.7481 -1.1692 1.4083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595410627.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:55 Heat of formation + Delta-G solvation = -103.292774 kcal Electronic energy + Delta-G solvation = -28929.581030 eV Core-core repulsion = 25038.652254 eV Total energy + Delta-G solvation = -3890.928777 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.51476 -38.64059 -38.31069 -37.58084 -37.11938 -36.54129 -34.28093 -33.40642 -31.59894 -30.25905 -29.89801 -29.36442 -25.59709 -25.39757 -23.71583 -22.71473 -22.34827 -21.81496 -20.15746 -19.11152 -18.97305 -18.48412 -17.79387 -17.39181 -17.02831 -16.70670 -16.27132 -16.18124 -15.91239 -15.61498 -15.52139 -14.90528 -14.75718 -14.52812 -14.29601 -14.15455 -14.03787 -13.74005 -13.46594 -13.31017 -13.28346 -13.21906 -13.00068 -12.89473 -12.74628 -12.65687 -12.60017 -12.29766 -12.14630 -11.88697 -11.73641 -11.70232 -11.45315 -11.31884 -11.13129 -10.80150 -10.13497 -9.75196 -9.28612 -8.32559 -6.38215 -0.86980 0.32203 0.39861 1.33541 1.35742 1.48076 1.51380 2.33690 2.46033 2.65559 2.86065 3.01995 3.02934 3.51708 3.62604 3.74116 3.81569 3.93888 3.99695 4.08796 4.19784 4.26587 4.30009 4.33304 4.51257 4.53411 4.54765 4.59559 4.67817 4.76475 4.81946 4.84884 4.90852 4.91846 5.07236 5.11738 5.22665 5.27748 5.40044 5.42996 5.46500 5.58857 5.60598 5.66813 5.91008 6.22406 6.65900 6.68845 7.26402 8.84375 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011776 B = 0.004366 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.078956 B = 6411.629755 C = 7650.907422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.175 3.825 3 H 0.098 0.902 4 C -0.159 4.159 5 C -0.097 4.097 6 C -0.136 4.136 7 C -0.103 4.103 8 C -0.157 4.157 9 C 0.110 3.890 10 O -0.339 6.339 11 C 0.047 3.953 12 C 0.074 3.926 13 N -0.976 5.976 14 S 2.612 3.388 15 O -0.981 6.981 16 O -0.984 6.984 17 C -0.597 4.597 18 C -0.100 4.100 19 C 0.000 4.000 20 C -0.543 4.543 21 H 0.032 0.968 22 C 0.006 3.994 23 N -0.949 5.949 24 Si 0.951 3.049 25 H -0.264 1.264 26 H -0.281 1.281 27 H -0.244 1.244 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.133 0.867 40 H 0.148 0.852 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.029 0.971 44 H 0.024 0.976 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.786 -5.001 -11.374 31.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.069 3.931 3 H 0.116 0.884 4 C -0.161 4.161 5 C -0.115 4.115 6 C -0.154 4.154 7 C -0.121 4.121 8 C -0.176 4.176 9 C 0.066 3.934 10 O -0.254 6.254 11 C -0.029 4.029 12 C -0.052 4.052 13 N -0.813 5.813 14 S 2.710 3.290 15 O -0.971 6.971 16 O -0.975 6.975 17 C -0.728 4.728 18 C -0.139 4.139 19 C -0.038 4.038 20 C -0.581 4.581 21 H 0.050 0.950 22 C -0.191 4.191 23 N -0.590 5.590 24 Si 0.774 3.226 25 H -0.189 1.189 26 H -0.206 1.206 27 H -0.168 1.168 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.164 0.836 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.134 0.866 39 H 0.152 0.848 40 H 0.166 0.834 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.047 0.953 44 H 0.042 0.958 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -28.482 -4.451 -10.570 30.704 hybrid contribution 0.981 -0.615 -0.571 1.291 sum -27.501 -5.067 -11.140 30.101 Atomic orbital electron populations 1.21960 0.90319 1.03759 1.03964 1.19734 0.97269 0.95967 0.80110 0.88382 1.20528 1.04523 0.94215 0.96850 1.21194 0.98790 1.00397 0.91140 1.21422 0.99246 0.95724 0.99034 1.21273 0.97927 0.94935 0.97922 1.21495 1.03464 1.01363 0.91249 1.18855 0.98939 0.89492 0.86082 1.85825 1.36281 1.66268 1.37067 1.23791 0.87792 0.99276 0.92082 1.22429 1.01477 0.83718 0.97536 1.57028 1.42735 1.41284 1.40203 1.04805 0.75541 0.74374 0.74309 1.93523 1.85783 1.83818 1.33957 1.93507 1.86600 1.32344 1.85003 1.30449 1.13404 1.15470 1.13524 1.21179 0.92328 1.00445 0.99972 1.19434 0.92001 0.96371 0.96018 1.21509 0.91695 1.24033 1.20875 0.94968 1.26034 0.94773 0.98938 0.99376 1.70073 0.98511 1.45553 1.44823 0.85646 0.78802 0.79141 0.79042 1.18937 1.20620 1.16784 0.91068 0.89326 0.90889 0.83618 0.83289 0.83720 0.85249 0.85320 0.90142 0.88761 0.86593 0.84822 0.83429 0.92060 0.91709 0.95300 0.95770 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.56 71.89 0.62 -1.07 16 2 C 0.18 3.32 2.52 44.10 0.11 3.43 16 3 H 0.10 2.13 6.71 -1.85 -0.01 2.11 16 4 C -0.16 -3.08 5.11 -19.92 -0.10 -3.18 16 5 C -0.10 -1.60 9.42 22.31 0.21 -1.39 16 6 C -0.14 -2.08 10.06 22.23 0.22 -1.86 16 7 C -0.10 -1.71 10.03 22.15 0.22 -1.49 16 8 C -0.16 -3.15 9.84 22.50 0.22 -2.93 16 9 C 0.11 2.33 5.80 22.65 0.13 2.46 16 10 O -0.34 -7.04 8.18 -95.25 -0.78 -7.82 16 11 C 0.05 0.63 6.71 72.37 0.49 1.11 16 12 C 0.07 1.16 5.69 86.92 0.49 1.66 16 13 N -0.98 -21.37 2.17 -497.80 -1.08 -22.45 16 14 S 2.61 81.02 5.43 -56.49 -0.31 80.72 16 15 O -0.98 -34.73 16.51 -127.65 -2.11 -36.83 16 16 O -0.98 -35.57 16.46 -127.65 -2.10 -37.67 16 17 C -0.60 -19.42 5.52 71.98 0.40 -19.03 16 18 C -0.10 -4.21 5.16 30.59 0.16 -4.05 16 19 C 0.00 0.01 4.04 29.85 0.12 0.14 16 20 C -0.54 -32.62 9.66 25.60 0.25 -32.37 16 21 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 22 C 0.01 0.35 5.47 84.65 0.46 0.81 16 23 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 24 Si 0.95 44.86 27.47 68.60 1.88 46.75 16 25 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 26 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 27 H -0.24 -10.65 6.54 99.48 0.65 -10.00 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 0.80 8.01 -2.38 -0.02 0.78 16 30 H 0.07 0.69 6.38 -2.39 -0.02 0.68 16 31 H 0.15 1.77 8.06 -2.90 -0.02 1.75 16 32 H 0.15 1.51 8.06 -2.90 -0.02 1.49 16 33 H 0.15 1.76 8.06 -2.92 -0.02 1.74 16 34 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 35 H 0.13 1.18 8.15 -2.33 -0.02 1.17 16 36 H 0.08 0.81 7.28 -2.44 -0.02 0.79 16 37 H 0.09 1.67 6.82 -1.93 -0.01 1.65 16 38 H 0.12 1.18 7.27 -2.64 -0.02 1.16 16 39 H 0.13 4.11 7.97 -2.39 -0.02 4.09 16 40 H 0.15 4.34 7.65 -2.39 -0.02 4.32 16 41 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 43 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 44 H 0.02 1.13 7.57 -2.39 -0.02 1.11 16 45 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -79.79 368.49 0.74 -79.05 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.93 Total: 16.56 kcal Atomic # 6 Polarization: -61.74 SS G_CDS: 4.00 Total: -57.74 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -0.78 Total: -83.01 kcal Atomic # 8 Polarization: -77.34 SS G_CDS: -4.99 Total: -82.33 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.75 kcal Atomic # 16 Polarization: 81.02 SS G_CDS: -0.31 Total: 80.72 kcal Total: -79.79 0.74 -79.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595410627.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.242 kcal (2) G-P(sol) polarization free energy of solvation -79.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds