Wall clock time and date at job start Tue Mar 31 2020 23:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52358 * 1 3 3 H 1.11589 * 106.20539 * 2 1 4 4 C 1.49833 * 111.79370 * 115.20113 * 2 1 3 5 5 C 1.39102 * 117.15304 * 278.66344 * 4 2 1 6 6 C 1.37867 * 120.92071 * 181.30012 * 5 4 2 7 7 C 1.38290 * 119.71268 * 359.88658 * 6 5 4 8 8 C 1.37671 * 119.78489 * 359.85855 * 7 6 5 9 9 C 1.38107 * 123.39369 * 99.57750 * 4 2 1 10 10 O 1.36784 * 125.18978 * 358.21372 * 9 4 2 11 11 C 1.44448 * 115.57718 * 320.23710 * 10 9 4 12 12 C 1.54629 * 106.04645 * 94.78050 * 11 10 9 13 13 N 1.45091 * 112.54209 * 244.03844 * 2 1 3 14 14 S 1.66855 * 119.19302 * 128.79859 * 13 2 1 15 15 O 1.42097 * 104.27715 * 153.99813 * 14 13 2 16 16 O 1.42102 * 104.28055 * 26.14310 * 14 13 2 17 17 C 1.81399 * 104.44832 * 270.07094 * 14 13 2 18 18 C 1.53004 * 109.47114 * 179.97438 * 17 14 13 19 19 C 1.53000 * 109.46935 * 179.97438 * 18 17 14 20 20 C 1.50707 * 109.46822 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99856 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99777 * 180.02562 * 20 19 18 23 23 N 1.31508 * 119.99829 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99941 * 359.72190 * 22 20 19 25 25 H 1.48494 * 109.47305 * 90.00066 * 24 22 20 26 26 H 1.48501 * 109.47156 * 210.00269 * 24 22 20 27 27 H 1.48507 * 109.47108 * 330.00069 * 24 22 20 28 28 H 1.09001 * 109.47470 * 169.73171 * 1 2 3 29 29 H 1.09008 * 109.46907 * 289.73422 * 1 2 3 30 30 H 1.08995 * 109.47399 * 49.73254 * 1 2 3 31 31 H 1.08022 * 119.21492 * 1.14936 * 5 4 2 32 32 H 1.08072 * 120.23798 * 179.79199 * 6 5 4 33 33 H 1.07933 * 120.06793 * 179.97438 * 7 6 5 34 34 H 1.08027 * 119.66231 * 180.14063 * 8 7 6 35 35 H 1.07068 * 110.82414 * 331.60322 * 11 10 9 36 36 H 1.09449 * 107.78538 * 211.15372 * 11 10 9 37 37 H 1.08930 * 109.87604 * 183.78852 * 12 11 10 38 38 H 1.09092 * 109.64620 * 63.00855 * 12 11 10 39 39 H 1.08998 * 109.46955 * 60.00416 * 17 14 13 40 40 H 1.08994 * 109.47000 * 299.99995 * 17 14 13 41 41 H 1.09003 * 109.47076 * 60.00220 * 18 17 14 42 42 H 1.08999 * 109.47738 * 300.00235 * 18 17 14 43 43 H 1.08998 * 109.46941 * 60.00751 * 19 18 17 44 44 H 1.08994 * 109.47194 * 300.00221 * 19 18 17 45 45 H 0.97001 * 119.99781 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5236 0.0000 0.0000 3 1 1.8350 1.0716 0.0000 4 6 2.0799 -0.5924 1.2588 5 6 2.1424 0.2343 2.3758 6 6 2.6650 -0.2227 3.5669 7 6 3.1324 -1.5211 3.6572 8 6 3.0698 -2.3483 2.5585 9 6 2.5402 -1.8914 1.3489 10 8 2.5197 -2.8071 0.3330 11 6 1.3345 -2.7962 -0.4926 12 6 1.6678 -1.8990 -1.7071 13 7 2.0798 -0.5866 -1.2048 14 16 3.2348 0.2581 -2.0630 15 8 3.9767 -0.7489 -2.7371 16 8 3.8494 1.0954 -1.0932 17 6 2.2835 1.2488 -3.2481 18 6 3.2420 2.0790 -4.1042 19 6 2.4397 2.9140 -5.1041 20 6 3.3839 3.7313 -5.9478 21 1 4.4496 3.6617 -5.7871 22 6 2.8872 4.5678 -6.9248 23 7 3.7111 5.2806 -7.6613 24 14 1.0443 4.6823 -7.2078 25 1 0.4775 5.7545 -6.3509 26 1 0.7813 4.9982 -8.6348 27 1 0.4090 3.3851 -6.8628 28 1 -0.3634 -1.0112 -0.1832 29 1 -0.3633 0.3470 0.9674 30 1 -0.3634 0.6642 -0.7841 31 1 1.7772 1.2482 2.3024 32 1 2.7114 0.4302 4.4270 33 1 3.5430 -1.8846 4.5867 34 1 3.4334 -3.3629 2.6318 35 1 0.4862 -2.4538 0.0637 36 1 1.1635 -3.8180 -0.8456 37 1 0.7886 -1.7926 -2.3413 38 1 2.4842 -2.3433 -2.2782 39 1 1.6105 1.9143 -2.7076 40 1 1.7021 0.5874 -3.8904 41 1 3.9154 1.4137 -4.6447 42 1 3.8232 2.7404 -3.4616 43 1 1.7661 3.5793 -4.5640 44 1 1.8590 2.2523 -5.7467 45 1 3.3616 5.8694 -8.3484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595410628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:00 Heat of formation + Delta-G solvation = -80.698527 kcal Electronic energy + Delta-G solvation = -28142.024938 eV Core-core repulsion = 24252.075922 eV Total energy + Delta-G solvation = -3889.949016 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.77467 -37.80848 -37.12615 -36.71107 -35.81394 -34.84999 -32.66029 -32.24243 -30.86714 -29.40742 -28.73545 -28.38115 -24.83372 -23.66902 -22.84952 -22.23750 -21.18271 -20.43501 -19.03277 -18.06327 -17.77586 -17.04972 -16.80019 -16.40958 -15.87684 -15.59071 -15.39432 -14.88950 -14.83533 -14.41481 -14.21967 -13.96697 -13.74049 -13.63197 -13.41949 -12.95608 -12.88042 -12.45448 -12.39702 -12.29696 -12.18257 -12.06035 -11.93435 -11.92548 -11.62039 -11.56314 -11.24713 -11.11598 -11.01609 -10.97832 -10.63288 -10.13027 -9.91370 -9.77919 -9.31940 -9.18195 -9.02568 -8.61137 -8.49227 -6.10487 -4.09981 0.25795 1.06003 1.14440 2.54678 3.18229 3.24275 3.31914 3.33667 3.55120 3.90242 4.08370 4.22075 4.32917 4.37987 4.52578 4.65107 4.73011 4.82217 4.87598 4.90874 4.98822 5.05884 5.07740 5.09100 5.17198 5.23072 5.25043 5.33952 5.44600 5.55123 5.68243 5.71468 5.77275 5.79554 6.06946 6.08648 6.18351 6.21965 6.28781 6.45447 6.55914 6.62859 7.08852 7.18110 7.23072 7.68428 8.45421 8.93928 9.50365 11.02837 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021247 B = 0.002835 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.545791 B = 9873.419761 C = 9984.634059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.186 3.814 3 H 0.099 0.901 4 C -0.139 4.139 5 C -0.084 4.084 6 C -0.141 4.141 7 C -0.096 4.096 8 C -0.147 4.147 9 C 0.124 3.876 10 O -0.313 6.313 11 C 0.049 3.951 12 C 0.082 3.918 13 N -0.987 5.987 14 S 2.584 3.416 15 O -0.950 6.950 16 O -0.949 6.949 17 C -0.612 4.612 18 C -0.098 4.098 19 C -0.003 4.003 20 C -0.528 4.528 21 H 0.075 0.925 22 C 0.068 3.932 23 N -0.900 5.900 24 Si 0.880 3.120 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.266 1.266 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.109 0.891 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.016 0.984 44 H 0.020 0.980 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.236 -16.559 21.849 29.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.080 3.920 3 H 0.116 0.884 4 C -0.141 4.141 5 C -0.103 4.103 6 C -0.159 4.159 7 C -0.114 4.114 8 C -0.166 4.166 9 C 0.079 3.921 10 O -0.227 6.227 11 C -0.027 4.027 12 C -0.043 4.043 13 N -0.822 5.822 14 S 2.682 3.318 15 O -0.941 6.941 16 O -0.940 6.940 17 C -0.744 4.744 18 C -0.137 4.137 19 C -0.042 4.042 20 C -0.566 4.566 21 H 0.093 0.907 22 C -0.134 4.134 23 N -0.538 5.538 24 Si 0.708 3.292 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.191 1.191 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.100 0.900 36 H 0.122 0.878 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.034 0.966 44 H 0.038 0.962 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.140 -16.664 21.785 28.910 hybrid contribution -1.676 0.504 -0.581 1.844 sum -10.816 -16.160 21.205 28.771 Atomic orbital electron populations 1.22135 0.93181 1.03091 1.03300 1.19164 0.94133 0.97421 0.81330 0.88366 1.20013 1.04758 0.92981 0.96385 1.21032 0.98156 0.99190 0.91912 1.21016 1.00721 0.96234 0.97975 1.20926 0.98610 0.93838 0.98010 1.21079 1.03778 1.00869 0.90827 1.18894 0.97775 0.88031 0.87379 1.86892 1.40016 1.53520 1.42300 1.23728 0.87140 1.01167 0.90682 1.22378 1.02322 0.82831 0.96763 1.57416 1.61152 1.28229 1.35416 1.06023 0.75091 0.75089 0.75552 1.93564 1.67719 1.56600 1.76176 1.93582 1.72964 1.69334 1.58078 1.30622 1.14159 1.13992 1.15600 1.21329 0.96616 0.98041 0.97739 1.19524 0.96000 0.94833 0.93842 1.21132 0.94890 1.23677 1.16871 0.90718 1.25026 0.97863 0.95059 0.95455 1.69908 1.34691 1.27205 1.22015 0.86775 0.86128 0.78854 0.77486 1.20212 1.21240 1.19065 0.91775 0.90761 0.91074 0.85465 0.85603 0.85552 0.85414 0.90036 0.87799 0.90377 0.87286 0.85422 0.85317 0.90964 0.90986 0.96607 0.96166 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.23 36.83 0.34 -0.78 16 2 C 0.19 1.93 1.84 -70.58 -0.13 1.80 16 3 H 0.10 1.05 6.71 -50.43 -0.34 0.71 16 4 C -0.14 -1.57 4.95 -104.77 -0.52 -2.09 16 5 C -0.08 -0.84 9.40 -39.40 -0.37 -1.21 16 6 C -0.14 -1.26 10.05 -39.70 -0.40 -1.66 16 7 C -0.10 -0.86 10.04 -39.77 -0.40 -1.26 16 8 C -0.15 -1.55 9.81 -39.23 -0.38 -1.93 16 9 C 0.12 1.48 6.05 -39.07 -0.24 1.24 16 10 O -0.31 -3.72 9.94 -22.30 -0.22 -3.94 16 11 C 0.05 0.40 6.31 38.01 0.24 0.64 16 12 C 0.08 0.77 6.04 -3.22 -0.02 0.75 16 13 N -0.99 -11.38 2.82 -108.36 -0.31 -11.69 16 14 S 2.58 38.87 5.32 -107.50 -0.57 38.30 16 15 O -0.95 -16.91 16.40 -57.54 -0.94 -17.85 16 16 O -0.95 -16.95 16.59 -57.54 -0.95 -17.90 16 17 C -0.61 -8.78 6.18 37.16 0.23 -8.55 16 18 C -0.10 -1.91 5.16 -26.73 -0.14 -2.05 16 19 C 0.00 -0.08 4.04 -27.88 -0.11 -0.19 16 20 C -0.53 -14.99 9.66 -34.44 -0.33 -15.32 16 21 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 22 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 23 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 24 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 27 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 28 H 0.06 0.39 5.43 -51.93 -0.28 0.11 16 29 H 0.07 0.45 8.05 -51.92 -0.42 0.03 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.13 1.02 7.97 -52.47 -0.42 0.60 16 32 H 0.13 0.83 8.06 -52.45 -0.42 0.40 16 33 H 0.13 0.80 8.05 -52.52 -0.42 0.38 16 34 H 0.13 1.17 8.06 -52.47 -0.42 0.75 16 35 H 0.08 0.56 5.15 -53.00 -0.27 0.29 16 36 H 0.10 0.59 8.18 -51.67 -0.42 0.17 16 37 H 0.08 0.49 8.14 -51.97 -0.42 0.07 16 38 H 0.11 1.16 6.70 -51.88 -0.35 0.82 16 39 H 0.13 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.13 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.02 0.35 7.58 -51.93 -0.39 -0.04 16 44 H 0.02 0.46 7.19 -51.93 -0.37 0.08 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -36.80 369.77 -10.31 -47.10 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.66 Total: -0.57 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: -2.33 Total: -28.74 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.47 Total: -38.55 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -2.12 Total: -39.69 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Atomic # 16 Polarization: 38.87 SS G_CDS: -0.57 Total: 38.30 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.80 -10.31 -47.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595410628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.595 kcal (2) G-P(sol) polarization free energy of solvation -36.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds