Wall clock time and date at job start Tue Mar 31 2020 22:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21274 * 119.99855 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99767 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.47037 * 299.99900 * 16 14 13 18 18 C 1.53000 * 109.46942 * 59.99640 * 16 14 13 19 19 S 1.81405 * 109.47045 * 184.99761 * 18 16 14 20 20 C 1.81398 * 101.92193 * 180.02562 * 19 18 16 21 21 O 1.42099 * 108.57804 * 294.49353 * 19 18 16 22 22 O 1.42102 * 108.57367 * 65.51475 * 19 18 16 23 23 C 1.50700 * 109.47167 * 179.97438 * 16 14 13 24 24 C 1.38238 * 119.99723 * 299.72686 * 23 16 14 25 25 C 1.38233 * 119.99779 * 179.80900 * 24 23 16 26 26 C 1.38235 * 120.00099 * 0.39782 * 25 24 23 27 27 C 1.38239 * 119.99577 * 359.85418 * 26 25 24 28 28 C 1.38229 * 120.00571 * 359.95864 * 27 26 25 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 34 34 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 35 35 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 36 36 H 1.08998 * 109.47391 * 304.99950 * 18 16 14 37 37 H 1.09004 * 109.46918 * 65.00030 * 18 16 14 38 38 H 1.08999 * 109.46932 * 60.00242 * 20 19 18 39 39 H 1.08998 * 109.46966 * 179.97438 * 20 19 18 40 40 H 1.09000 * 109.47538 * 300.00298 * 20 19 18 41 41 H 1.08004 * 120.00026 * 359.97438 * 24 23 16 42 42 H 1.08004 * 120.00112 * 180.23106 * 25 24 23 43 43 H 1.08002 * 120.00353 * 179.83820 * 26 25 24 44 44 H 1.08005 * 119.99523 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.00379 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3395 2.6319 -0.4345 16 6 0.0367 3.3385 -2.6546 17 1 0.7281 4.1540 -2.8669 18 6 0.0808 2.3220 -3.7973 19 16 -0.2545 3.1640 -5.3688 20 6 -0.1543 1.7959 -6.5557 21 8 -1.5906 3.6473 -5.3474 22 8 0.8073 4.0710 -5.6319 23 6 -1.3613 3.8858 -2.5234 24 6 -2.4158 3.0320 -2.2587 25 6 -3.6975 3.5346 -2.1344 26 6 -3.9260 4.8898 -2.2830 27 6 -2.8722 5.7428 -2.5529 28 6 -1.5899 5.2409 -2.6733 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 5.8770 0.4827 2.1133 35 1 2.2720 2.1231 -1.9978 36 1 1.0676 1.8608 -3.8355 37 1 -0.6734 1.5532 -3.6290 38 1 -0.9018 1.0429 -6.3061 39 1 -0.3408 2.1729 -7.5613 40 1 0.8393 1.3497 -6.5130 41 1 -2.2378 1.9727 -2.1463 42 1 -4.5208 2.8681 -1.9239 43 1 -4.9278 5.2821 -2.1885 44 1 -3.0508 6.8016 -2.6694 45 1 -0.7666 5.9074 -2.8838 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597509252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:59 Heat of formation + Delta-G solvation = -73.998975 kcal Electronic energy + Delta-G solvation = -28593.738413 eV Core-core repulsion = 24704.079911 eV Total energy + Delta-G solvation = -3889.658502 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.16969 -38.52975 -37.10074 -36.15593 -35.51311 -34.35067 -32.40355 -31.51628 -30.79156 -30.10218 -29.32361 -27.56363 -25.26469 -22.88430 -22.50228 -21.92883 -20.34937 -19.59262 -19.01733 -17.65445 -17.01735 -16.75541 -16.36689 -16.13261 -15.80037 -15.78488 -15.10600 -14.89580 -14.41683 -14.30217 -13.86732 -13.61715 -13.47903 -13.40148 -13.21695 -13.01680 -12.89152 -12.56469 -12.26254 -12.15377 -12.12679 -12.08002 -11.90197 -11.66565 -11.32230 -11.15107 -11.03912 -10.97355 -10.88933 -10.86544 -10.69316 -9.98971 -9.61445 -9.29833 -9.18127 -8.80755 -8.68834 -8.59097 -8.15252 -6.25828 -4.28764 -0.25602 1.44351 1.61523 2.50496 2.99761 3.18565 3.31758 3.35944 3.45472 3.72022 3.78820 4.05618 4.26748 4.30675 4.47847 4.49940 4.61865 4.77538 5.01795 5.07630 5.11514 5.20678 5.21497 5.31031 5.34297 5.45337 5.62377 5.76939 5.87820 5.93808 6.06943 6.11101 6.18009 6.55608 6.57339 6.62173 6.64436 6.69358 6.76223 6.86929 7.14131 7.18985 7.22480 7.44885 8.07814 8.44577 8.70351 8.84191 9.34637 10.86169 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013623 B = 0.003945 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.830664 B = 7095.145813 C = 8154.132884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.243 3.757 4 H 0.050 0.950 5 C -0.537 4.537 6 H 0.081 0.919 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.699 5.699 14 C 0.517 3.483 15 O -0.530 6.530 16 C -0.055 4.055 17 H 0.115 0.885 18 C -0.608 4.608 19 S 2.417 3.583 20 C -0.661 4.661 21 O -0.919 6.919 22 O -0.936 6.936 23 C -0.083 4.083 24 C -0.071 4.071 25 C -0.122 4.122 26 C -0.113 4.113 27 C -0.119 4.119 28 C -0.100 4.100 29 H 0.031 0.969 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.268 0.732 35 H 0.394 0.606 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.680 2.105 -14.558 20.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 C 0.139 3.861 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.203 1.203 11 H -0.221 1.221 12 H -0.185 1.185 13 N -0.347 5.347 14 C 0.299 3.701 15 O -0.407 6.407 16 C -0.077 4.077 17 H 0.133 0.867 18 C -0.736 4.736 19 S 2.598 3.402 20 C -0.810 4.810 21 O -0.916 6.916 22 O -0.933 6.933 23 C -0.083 4.083 24 C -0.089 4.089 25 C -0.140 4.140 26 C -0.131 4.131 27 C -0.137 4.137 28 C -0.118 4.118 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.227 0.773 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.222 2.899 -13.919 20.829 hybrid contribution 0.246 -1.517 0.533 1.626 sum -14.975 1.382 -13.386 20.134 Atomic orbital electron populations 1.21891 0.96990 0.99005 1.02296 1.22292 0.94302 0.99980 1.01160 1.19173 0.95709 0.88442 0.82747 0.93203 1.21045 0.88553 1.39937 1.07956 0.90129 1.24829 0.94846 0.95134 0.97629 1.69862 1.08693 1.44363 1.29807 0.86910 0.80985 0.79873 0.80994 1.20282 1.22130 1.18483 1.46159 1.14637 1.55841 1.18069 1.19794 0.82819 0.79261 0.88187 1.90706 1.51324 1.58867 1.39774 1.20017 0.96641 0.97415 0.93638 0.86690 1.30463 1.13125 1.11829 1.18194 1.08042 0.75972 0.77908 0.78270 1.30320 1.11759 1.20866 1.18015 1.93647 1.35559 1.76991 1.85423 1.93614 1.57276 1.58769 1.83657 1.19227 0.92755 0.94049 1.02311 1.20782 0.92138 0.99353 0.96616 1.21016 0.96672 0.95491 1.00775 1.21082 0.98685 0.93750 0.99615 1.20967 0.92691 0.99480 1.00590 1.20959 0.97431 0.94122 0.99333 0.94994 0.92977 0.92780 0.92714 0.92319 0.92240 0.77252 0.83965 0.84196 0.85283 0.85304 0.85188 0.86455 0.86361 0.86474 0.86245 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 8.51 37.16 0.32 -2.38 16 2 C -0.14 -2.90 5.11 -26.73 -0.14 -3.03 16 3 C 0.24 5.46 1.83 -69.08 -0.13 5.33 16 4 H 0.05 1.26 6.64 -51.93 -0.34 0.92 16 5 C -0.54 -13.99 9.31 -34.44 -0.32 -14.31 16 6 H 0.08 2.21 7.98 -52.48 -0.42 1.79 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -25.86 13.96 55.43 0.77 -25.09 16 9 Si 0.88 21.28 24.41 -169.99 -4.15 17.13 16 10 H -0.28 -6.43 6.83 56.52 0.39 -6.04 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.26 -6.23 6.53 56.52 0.37 -5.86 16 13 N -0.70 -12.71 4.88 -54.93 -0.27 -12.98 16 14 C 0.52 8.89 5.60 -10.98 -0.06 8.83 16 15 O -0.53 -10.79 12.27 5.56 0.07 -10.72 16 16 C -0.05 -0.73 2.38 -92.92 -0.22 -0.95 16 17 H 0.12 1.39 7.88 -51.93 -0.41 0.98 16 18 C -0.61 -5.66 5.10 37.16 0.19 -5.47 16 19 S 2.42 22.14 5.22 -107.50 -0.56 21.58 16 20 C -0.66 -3.54 10.62 101.05 1.07 -2.46 16 21 O -0.92 -11.16 16.42 -57.83 -0.95 -12.11 16 22 O -0.94 -11.74 18.10 -57.83 -1.05 -12.79 16 23 C -0.08 -1.18 2.72 -104.62 -0.29 -1.46 16 24 C -0.07 -0.99 7.88 -39.58 -0.31 -1.30 16 25 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 26 C -0.11 -1.38 10.05 -39.58 -0.40 -1.78 16 27 C -0.12 -1.51 10.05 -39.58 -0.40 -1.90 16 28 C -0.10 -1.38 9.40 -39.59 -0.37 -1.75 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.91 5.64 -51.93 -0.29 0.62 16 31 H 0.05 1.09 7.85 -51.93 -0.41 0.69 16 32 H 0.05 1.23 3.21 -51.93 -0.17 1.06 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.39 6.18 7.90 -40.82 -0.32 5.86 16 36 H 0.14 1.00 7.43 -51.93 -0.39 0.61 16 37 H 0.14 1.05 7.21 -51.92 -0.37 0.68 16 38 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 39 H 0.13 0.60 8.14 -51.92 -0.42 0.18 16 40 H 0.13 0.50 8.14 -51.92 -0.42 0.07 16 41 H 0.12 1.54 7.48 -52.48 -0.39 1.15 16 42 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 43 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 45 H 0.12 1.45 7.95 -52.49 -0.42 1.03 16 LS Contribution 370.12 15.07 5.58 5.58 Total: -1.00 -36.18 370.12 -8.60 -44.78 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.50 Total: 7.15 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -1.55 Total: -22.52 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.51 Total: -38.07 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -1.93 Total: -35.62 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.15 Total: 17.13 kcal Atomic # 16 Polarization: 22.14 SS G_CDS: -0.56 Total: 21.58 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.18 -8.60 -44.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597509252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.219 kcal (2) G-P(sol) polarization free energy of solvation -36.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds