Wall clock time and date at job start Tue Mar 31 2020 22:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21274 * 119.99855 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99767 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.47037 * 299.99900 * 16 14 13 18 18 C 1.53000 * 109.46942 * 59.99640 * 16 14 13 19 19 S 1.81405 * 109.47045 * 184.99761 * 18 16 14 20 20 C 1.81398 * 101.92193 * 180.02562 * 19 18 16 21 21 O 1.42099 * 108.57804 * 294.49353 * 19 18 16 22 22 O 1.42102 * 108.57367 * 65.51475 * 19 18 16 23 23 C 1.50700 * 109.47167 * 179.97438 * 16 14 13 24 24 C 1.38238 * 119.99723 * 299.72686 * 23 16 14 25 25 C 1.38233 * 119.99779 * 179.80900 * 24 23 16 26 26 C 1.38235 * 120.00099 * 0.39782 * 25 24 23 27 27 C 1.38239 * 119.99577 * 359.85418 * 26 25 24 28 28 C 1.38229 * 120.00571 * 359.95864 * 27 26 25 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 34 34 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 35 35 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 36 36 H 1.08998 * 109.47391 * 304.99950 * 18 16 14 37 37 H 1.09004 * 109.46918 * 65.00030 * 18 16 14 38 38 H 1.08999 * 109.46932 * 60.00242 * 20 19 18 39 39 H 1.08998 * 109.46966 * 179.97438 * 20 19 18 40 40 H 1.09000 * 109.47538 * 300.00298 * 20 19 18 41 41 H 1.08004 * 120.00026 * 359.97438 * 24 23 16 42 42 H 1.08004 * 120.00112 * 180.23106 * 25 24 23 43 43 H 1.08002 * 120.00353 * 179.83820 * 26 25 24 44 44 H 1.08005 * 119.99523 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.00379 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3395 2.6319 -0.4345 16 6 0.0367 3.3385 -2.6546 17 1 0.7281 4.1540 -2.8669 18 6 0.0808 2.3220 -3.7973 19 16 -0.2545 3.1640 -5.3688 20 6 -0.1543 1.7959 -6.5557 21 8 -1.5906 3.6473 -5.3474 22 8 0.8073 4.0710 -5.6319 23 6 -1.3613 3.8858 -2.5234 24 6 -2.4158 3.0320 -2.2587 25 6 -3.6975 3.5346 -2.1344 26 6 -3.9260 4.8898 -2.2830 27 6 -2.8722 5.7428 -2.5529 28 6 -1.5899 5.2409 -2.6733 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 5.8770 0.4827 2.1133 35 1 2.2720 2.1231 -1.9978 36 1 1.0676 1.8608 -3.8355 37 1 -0.6734 1.5532 -3.6290 38 1 -0.9018 1.0429 -6.3061 39 1 -0.3408 2.1729 -7.5613 40 1 0.8393 1.3497 -6.5130 41 1 -2.2378 1.9727 -2.1463 42 1 -4.5208 2.8681 -1.9239 43 1 -4.9278 5.2821 -2.1885 44 1 -3.0508 6.8016 -2.6694 45 1 -0.7666 5.9074 -2.8838 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597509252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:58 Heat of formation + Delta-G solvation = -101.148989 kcal Electronic energy + Delta-G solvation = -28594.915726 eV Core-core repulsion = 24704.079911 eV Total energy + Delta-G solvation = -3890.835815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.41895 -39.70110 -37.90372 -37.14480 -36.94557 -35.44391 -34.35894 -33.05722 -31.74494 -30.77199 -30.11643 -29.30436 -26.31121 -24.62190 -23.52211 -23.17282 -21.79766 -21.04151 -19.74411 -19.16445 -18.05717 -17.99860 -17.43593 -17.25285 -17.00801 -16.83694 -16.24753 -16.09198 -15.87936 -15.56219 -15.07323 -14.80065 -14.67172 -14.18923 -14.08186 -14.01710 -13.90101 -13.86079 -13.68920 -13.59294 -13.18737 -13.00450 -12.95734 -12.91692 -12.80357 -12.73912 -12.36953 -12.09240 -11.93898 -11.85056 -11.82978 -11.67210 -11.34472 -11.22222 -10.85878 -10.56656 -9.76464 -9.68307 -9.58135 -8.37920 -6.43115 -0.92749 0.46099 0.62908 1.25734 1.35241 1.44042 1.70161 1.87059 2.25495 2.38584 2.74161 2.98342 3.02327 3.14244 3.44169 3.57731 3.75094 4.08124 4.11544 4.13481 4.21072 4.25888 4.26434 4.32783 4.34868 4.40037 4.50055 4.62133 4.70151 4.84299 4.87234 5.00051 5.04316 5.13146 5.15977 5.22082 5.25603 5.42326 5.54940 5.61049 5.66386 5.67813 5.70131 6.14374 6.20523 6.59713 6.87745 7.19977 7.45317 8.77225 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013623 B = 0.003945 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.830664 B = 7095.145813 C = 8154.132884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.137 4.137 3 C 0.250 3.750 4 H 0.020 0.980 5 C -0.533 4.533 6 H 0.058 0.942 7 C 0.031 3.969 8 N -0.934 5.934 9 Si 0.935 3.065 10 H -0.258 1.258 11 H -0.297 1.297 12 H -0.262 1.262 13 N -0.698 5.698 14 C 0.520 3.480 15 O -0.561 6.561 16 C -0.051 4.051 17 H 0.120 0.880 18 C -0.613 4.613 19 S 2.421 3.579 20 C -0.640 4.640 21 O -0.955 6.955 22 O -0.979 6.979 23 C -0.096 4.096 24 C -0.088 4.088 25 C -0.132 4.132 26 C -0.120 4.120 27 C -0.130 4.130 28 C -0.124 4.124 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.032 0.968 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.269 0.731 35 H 0.406 0.594 36 H 0.166 0.834 37 H 0.160 0.840 38 H 0.154 0.846 39 H 0.141 0.859 40 H 0.153 0.847 41 H 0.121 0.879 42 H 0.139 0.861 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.559 0.608 -16.107 23.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.175 4.175 3 C 0.145 3.855 4 H 0.037 0.963 5 C -0.571 4.571 6 H 0.076 0.924 7 C -0.169 4.169 8 N -0.573 5.573 9 Si 0.763 3.237 10 H -0.184 1.184 11 H -0.225 1.225 12 H -0.187 1.187 13 N -0.347 5.347 14 C 0.305 3.695 15 O -0.440 6.440 16 C -0.074 4.074 17 H 0.138 0.862 18 C -0.740 4.740 19 S 2.606 3.394 20 C -0.793 4.793 21 O -0.952 6.952 22 O -0.976 6.976 23 C -0.097 4.097 24 C -0.106 4.106 25 C -0.150 4.150 26 C -0.137 4.137 27 C -0.147 4.147 28 C -0.142 4.142 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.242 0.758 36 H 0.184 0.816 37 H 0.178 0.822 38 H 0.173 0.827 39 H 0.159 0.841 40 H 0.171 0.829 41 H 0.139 0.861 42 H 0.157 0.843 43 H 0.162 0.838 44 H 0.158 0.842 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.112 1.438 -15.474 23.116 hybrid contribution 0.819 -1.001 0.926 1.591 sum -16.293 0.437 -14.548 21.847 Atomic orbital electron populations 1.21787 0.95089 1.00588 1.01795 1.22197 0.95937 0.98189 1.01207 1.18791 0.93088 0.89846 0.83786 0.96252 1.21313 0.90449 1.38381 1.06943 0.92427 1.25518 0.95632 0.95964 0.99767 1.69974 1.10274 1.46203 1.30808 0.86056 0.79224 0.80021 0.78386 1.18382 1.22453 1.18717 1.45966 1.15566 1.56113 1.17082 1.20369 0.81743 0.78267 0.89167 1.90691 1.52121 1.59876 1.41331 1.19941 0.96471 0.98208 0.92732 0.86200 1.30544 1.15366 1.11376 1.16740 1.07633 0.74407 0.78755 0.78588 1.30138 1.14206 1.18714 1.16228 1.93600 1.36836 1.78769 1.86008 1.93561 1.58183 1.61616 1.84245 1.19371 0.93119 0.94374 1.02807 1.20964 0.92704 0.99641 0.97264 1.21378 0.96986 0.96318 1.00297 1.21462 0.99895 0.93623 0.98754 1.21332 0.92475 1.00862 1.00068 1.21238 0.98414 0.94427 1.00118 0.92265 0.91941 0.94896 0.94128 0.90707 0.92151 0.75803 0.81614 0.82156 0.82718 0.84061 0.82890 0.86093 0.84267 0.83798 0.84157 0.85663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 8.51 71.98 0.61 -4.15 16 2 C -0.14 -5.48 5.11 30.60 0.16 -5.32 16 3 C 0.25 11.18 1.83 44.25 0.08 11.26 16 4 H 0.02 1.00 6.64 -2.39 -0.02 0.99 16 5 C -0.53 -28.08 9.31 25.60 0.24 -27.84 16 6 H 0.06 3.23 7.98 -2.91 -0.02 3.21 16 7 C 0.03 1.71 5.45 84.66 0.46 2.17 16 8 N -0.93 -55.20 13.96 21.45 0.30 -54.90 16 9 Si 0.94 44.08 24.41 68.60 1.67 45.76 16 10 H -0.26 -11.34 6.83 99.48 0.68 -10.66 16 11 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 12 H -0.26 -12.35 6.53 99.48 0.65 -11.70 16 13 N -0.70 -24.93 4.88 -446.08 -2.18 -27.11 16 14 C 0.52 17.54 5.60 87.66 0.49 18.03 16 15 O -0.56 -22.76 12.27 -3.01 -0.04 -22.80 16 16 C -0.05 -1.33 2.38 -12.29 -0.03 -1.36 16 17 H 0.12 2.91 7.88 -2.39 -0.02 2.89 16 18 C -0.61 -10.11 5.10 71.98 0.37 -9.74 16 19 S 2.42 40.33 5.22 -56.49 -0.29 40.03 16 20 C -0.64 -4.28 10.62 113.37 1.20 -3.07 16 21 O -0.95 -22.30 16.42 -127.37 -2.09 -24.39 16 22 O -0.98 -23.99 18.10 -127.37 -2.31 -26.29 16 23 C -0.10 -2.68 2.72 -19.87 -0.05 -2.74 16 24 C -0.09 -2.36 7.88 22.27 0.18 -2.19 16 25 C -0.13 -3.19 10.05 22.27 0.22 -2.97 16 26 C -0.12 -2.73 10.05 22.27 0.22 -2.51 16 27 C -0.13 -3.16 10.05 22.27 0.22 -2.94 16 28 C -0.12 -3.40 9.40 22.27 0.21 -3.19 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.06 2.04 5.64 -2.39 -0.01 2.03 16 31 H 0.03 1.28 7.85 -2.38 -0.02 1.26 16 32 H 0.04 1.74 3.21 -2.39 -0.01 1.74 16 33 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.41 12.40 7.90 -92.71 -0.73 11.67 16 36 H 0.17 1.85 7.43 -2.39 -0.02 1.84 16 37 H 0.16 1.95 7.21 -2.39 -0.02 1.93 16 38 H 0.15 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.15 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.12 3.02 7.48 -2.91 -0.02 3.00 16 42 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 43 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 44 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 45 H 0.13 3.10 7.95 -2.91 -0.02 3.07 16 Total: -1.00 -80.34 370.12 -0.16 -80.50 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 0.19 Total: 25.74 kcal Atomic # 6 Polarization: -41.13 SS G_CDS: 4.58 Total: -36.55 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -1.88 Total: -82.00 kcal Atomic # 8 Polarization: -69.05 SS G_CDS: -4.43 Total: -73.48 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.67 Total: 45.76 kcal Atomic # 16 Polarization: 40.33 SS G_CDS: -0.29 Total: 40.03 kcal Total: -80.34 -0.16 -80.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597509252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.646 kcal (2) G-P(sol) polarization free energy of solvation -80.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds