Wall clock time and date at job start Tue Mar 31 2020 22:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46942 * 2 1 4 4 H 1.09002 * 109.47125 * 305.00016 * 3 2 1 5 5 C 1.50700 * 109.46873 * 185.00235 * 3 2 1 6 6 H 1.08002 * 119.99597 * 239.99592 * 5 3 2 7 7 C 1.37877 * 120.00379 * 60.00255 * 5 3 2 8 8 N 1.31515 * 119.99805 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00013 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47043 * 90.00087 * 9 7 5 11 11 H 1.48496 * 109.46826 * 209.99390 * 9 7 5 12 12 H 1.48500 * 109.47107 * 329.99723 * 9 7 5 13 13 N 1.46500 * 109.47096 * 65.00116 * 3 2 1 14 14 C 1.34774 * 119.99881 * 274.99880 * 13 3 2 15 15 O 1.21285 * 120.00019 * 0.02562 * 14 13 3 16 16 C 1.50699 * 119.99942 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.46959 * 299.99950 * 16 14 13 18 18 C 1.52997 * 109.47078 * 59.99862 * 16 14 13 19 19 S 1.81404 * 109.47257 * 184.99874 * 18 16 14 20 20 C 1.81392 * 101.92216 * 180.02562 * 19 18 16 21 21 O 1.42102 * 108.57919 * 294.48998 * 19 18 16 22 22 O 1.42106 * 108.57605 * 65.51473 * 19 18 16 23 23 C 1.50701 * 109.47269 * 180.02562 * 16 14 13 24 24 C 1.38236 * 119.99963 * 299.72793 * 23 16 14 25 25 C 1.38236 * 120.00036 * 179.81111 * 24 23 16 26 26 C 1.38226 * 119.99834 * 0.39071 * 25 24 23 27 27 C 1.38237 * 120.00085 * 359.86461 * 26 25 24 28 28 C 1.38229 * 120.00216 * 120.00036 * 23 16 14 29 29 H 1.09000 * 109.47526 * 60.00106 * 1 2 3 30 30 H 1.08999 * 109.46910 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47325 * 299.99884 * 1 2 3 32 32 H 1.09005 * 109.47243 * 240.00472 * 2 1 3 33 33 H 1.09000 * 109.47526 * 119.99894 * 2 1 3 34 34 H 0.96997 * 119.99666 * 180.02562 * 8 7 5 35 35 H 0.96998 * 119.99994 * 95.00158 * 13 3 2 36 36 H 1.09001 * 109.47630 * 305.00104 * 18 16 14 37 37 H 1.09004 * 109.47346 * 65.00234 * 18 16 14 38 38 H 1.09000 * 109.47342 * 60.00386 * 20 19 18 39 39 H 1.09001 * 109.47306 * 180.02562 * 20 19 18 40 40 H 1.09000 * 109.47384 * 299.99979 * 20 19 18 41 41 H 1.08010 * 119.99941 * 359.97438 * 24 23 16 42 42 H 1.08001 * 119.99466 * 180.23187 * 25 24 23 43 43 H 1.08005 * 120.00406 * 179.83264 * 26 25 24 44 44 H 1.07998 * 120.00065 * 179.97438 * 27 26 25 45 45 H 1.08002 * 120.00084 * 359.97438 * 28 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1239 6 1 4.1471 1.8889 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8814 -1.3819 10 1 6.5549 -0.3501 -0.7603 11 1 6.3829 0.9224 -2.8173 12 1 6.5569 2.0740 -0.6902 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3397 2.6318 0.4344 16 6 0.0366 3.3386 2.6545 17 1 0.0680 2.6145 3.4686 18 6 1.0071 4.4832 2.9523 19 16 0.6180 5.1997 4.5728 20 6 1.8658 6.5088 4.7131 21 8 -0.6661 5.8044 4.5040 22 8 0.8720 4.2224 5.5727 23 6 -1.3614 3.8858 2.5232 24 6 -1.6457 4.8307 1.5550 25 6 -2.9289 5.3298 1.4321 26 6 -3.9259 4.8901 2.2825 27 6 -3.6404 3.9492 3.2542 28 6 -2.3581 3.4472 3.3746 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 3.8293 -0.0617 -2.9495 35 1 2.2719 2.1232 1.9978 36 1 2.0281 4.1015 2.9595 37 1 0.9114 5.2501 2.1836 38 1 1.7444 7.2160 3.8926 39 1 1.7415 7.0290 5.6629 40 1 2.8617 6.0679 4.6684 41 1 -0.8658 5.1769 0.8929 42 1 -3.1518 6.0652 0.6732 43 1 -4.9280 5.2820 2.1883 44 1 -4.4193 3.6059 3.9189 45 1 -2.1351 2.7120 4.1337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597509253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:03 Heat of formation + Delta-G solvation = -82.492197 kcal Electronic energy + Delta-G solvation = -28425.873777 eV Core-core repulsion = 24535.846981 eV Total energy + Delta-G solvation = -3890.026796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.01458 -38.37702 -37.05414 -36.10795 -35.23378 -34.23318 -32.38770 -30.91899 -30.71645 -30.03408 -29.22166 -27.09011 -25.11938 -23.12643 -22.45805 -21.68156 -19.97854 -19.34840 -18.96771 -17.55337 -16.92714 -16.55513 -16.29480 -16.08577 -15.69239 -15.35881 -15.11609 -14.69556 -14.28287 -14.24475 -13.75614 -13.54056 -13.42382 -13.21930 -13.07268 -12.90791 -12.70921 -12.29169 -12.20905 -12.08934 -12.04468 -11.72948 -11.47262 -11.30921 -11.25660 -11.05559 -10.92406 -10.88522 -10.84337 -10.78941 -10.35248 -10.21370 -9.66410 -9.12372 -9.04200 -8.61971 -8.56603 -8.50456 -7.88971 -6.17864 -4.27902 -0.20137 1.51553 1.68250 2.55773 3.14477 3.19540 3.26871 3.27879 3.53234 3.82556 3.85821 4.14954 4.32525 4.38744 4.53920 4.58913 4.68503 4.84724 5.08624 5.13529 5.17657 5.28153 5.29424 5.38107 5.45355 5.56093 5.69624 5.84532 6.16016 6.24951 6.37308 6.43796 6.63497 6.63657 6.70939 6.77083 7.01333 7.15866 7.21804 7.32127 7.38529 7.56562 7.67352 7.84198 8.13161 8.58248 8.71021 9.04427 9.39688 10.87279 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012644 B = 0.003890 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.884302 B = 7196.488455 C = 8631.905323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.129 4.129 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.707 5.707 14 C 0.515 3.485 15 O -0.528 6.528 16 C -0.056 4.056 17 H 0.111 0.889 18 C -0.605 4.605 19 S 2.416 3.584 20 C -0.661 4.661 21 O -0.920 6.920 22 O -0.939 6.939 23 C -0.081 4.081 24 C -0.070 4.070 25 C -0.121 4.121 26 C -0.114 4.114 27 C -0.120 4.120 28 C -0.102 4.102 29 H 0.049 0.951 30 H 0.022 0.978 31 H 0.038 0.962 32 H 0.099 0.901 33 H 0.031 0.969 34 H 0.265 0.735 35 H 0.387 0.613 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.153 11.185 12.430 17.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.355 5.355 14 C 0.297 3.703 15 O -0.405 6.405 16 C -0.078 4.078 17 H 0.129 0.871 18 C -0.733 4.733 19 S 2.597 3.403 20 C -0.810 4.810 21 O -0.917 6.917 22 O -0.936 6.936 23 C -0.082 4.082 24 C -0.088 4.088 25 C -0.139 4.139 26 C -0.132 4.132 27 C -0.138 4.138 28 C -0.120 4.120 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.057 0.943 32 H 0.117 0.883 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.219 0.781 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.321 10.825 12.138 17.835 hybrid contribution 2.115 0.153 -0.363 2.152 sum -5.206 10.978 11.775 16.919 Atomic orbital electron populations 1.21838 0.98282 0.98121 1.01245 1.21948 0.92651 0.99806 1.02336 1.18807 0.94188 0.89220 0.80805 0.93218 1.21212 0.90660 1.39282 1.06291 0.92117 1.24879 0.98558 0.94774 0.95378 1.69892 1.35145 1.37388 1.09355 0.86470 0.84887 0.78447 0.77402 1.20514 1.21079 1.19920 1.46494 1.14355 1.56004 1.18603 1.19728 0.82979 0.79622 0.87984 1.90713 1.51022 1.59251 1.39547 1.20048 0.91679 0.95567 1.00550 0.87078 1.30435 1.09165 1.09848 1.23881 1.08058 0.77195 0.77424 0.77591 1.30319 1.19272 1.19658 1.11722 1.93646 1.34998 1.76911 1.86119 1.93602 1.86202 1.58769 1.55001 1.19234 0.93305 0.97886 0.97755 1.20811 0.96899 0.95281 0.95819 1.21022 0.93177 1.00388 0.99338 1.21068 0.98875 0.97484 0.95778 1.20950 0.96273 0.97839 0.98765 1.20937 0.93142 0.99309 0.98601 0.93168 0.95843 0.94250 0.88276 0.94985 0.92516 0.78052 0.84021 0.84120 0.85231 0.85368 0.85232 0.86340 0.86338 0.86512 0.86323 0.86334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.16 0.32 -2.72 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.49 2.24 -69.08 -0.15 6.34 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.54 -13.47 8.73 -34.44 -0.30 -13.77 16 6 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.00 11.29 55.43 0.63 -23.37 16 9 Si 0.90 19.91 29.54 -169.99 -5.02 14.89 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 N -0.71 -13.53 4.88 -54.93 -0.27 -13.80 16 14 C 0.51 9.43 5.60 -10.99 -0.06 9.37 16 15 O -0.53 -11.54 12.26 5.55 0.07 -11.47 16 16 C -0.06 -0.79 2.38 -92.92 -0.22 -1.01 16 17 H 0.11 1.41 7.88 -51.93 -0.41 1.00 16 18 C -0.60 -6.21 5.10 37.16 0.19 -6.02 16 19 S 2.42 23.55 5.22 -107.50 -0.56 22.99 16 20 C -0.66 -3.94 10.62 101.05 1.07 -2.86 16 21 O -0.92 -11.72 16.42 -57.83 -0.95 -12.67 16 22 O -0.94 -12.09 18.10 -57.83 -1.05 -13.14 16 23 C -0.08 -1.22 2.73 -104.63 -0.29 -1.50 16 24 C -0.07 -1.05 7.88 -39.58 -0.31 -1.36 16 25 C -0.12 -1.65 10.05 -39.59 -0.40 -2.05 16 26 C -0.11 -1.46 10.05 -39.59 -0.40 -1.86 16 27 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 28 C -0.10 -1.46 9.40 -39.59 -0.37 -1.83 16 29 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 32 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.39 6.31 7.90 -40.82 -0.32 5.98 16 36 H 0.14 1.14 7.43 -51.92 -0.39 0.76 16 37 H 0.14 1.24 7.21 -51.92 -0.37 0.86 16 38 H 0.13 0.56 8.14 -51.92 -0.42 0.14 16 39 H 0.13 0.66 8.14 -51.92 -0.42 0.24 16 40 H 0.13 0.57 8.14 -51.92 -0.42 0.15 16 41 H 0.12 1.72 7.49 -52.48 -0.39 1.32 16 42 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 43 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 44 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.12 1.48 7.95 -52.49 -0.42 1.07 16 LS Contribution 376.90 15.07 5.68 5.68 Total: -1.00 -34.72 376.90 -9.66 -44.38 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -6.63 Total: 9.32 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -1.56 Total: -22.81 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.36 Total: -37.17 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -1.93 Total: -37.28 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 16 Polarization: 23.55 SS G_CDS: -0.56 Total: 22.99 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.72 -9.66 -44.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597509253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.114 kcal (2) G-P(sol) polarization free energy of solvation -34.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds