Wall clock time and date at job start Tue Mar 31 2020 22:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46942 * 2 1 4 4 H 1.09002 * 109.47125 * 305.00016 * 3 2 1 5 5 C 1.50700 * 109.46873 * 185.00235 * 3 2 1 6 6 H 1.08002 * 119.99597 * 239.99592 * 5 3 2 7 7 C 1.37877 * 120.00379 * 60.00255 * 5 3 2 8 8 N 1.31515 * 119.99805 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00013 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47043 * 90.00087 * 9 7 5 11 11 H 1.48496 * 109.46826 * 209.99390 * 9 7 5 12 12 H 1.48500 * 109.47107 * 329.99723 * 9 7 5 13 13 N 1.46500 * 109.47096 * 65.00116 * 3 2 1 14 14 C 1.34774 * 119.99881 * 274.99880 * 13 3 2 15 15 O 1.21285 * 120.00019 * 0.02562 * 14 13 3 16 16 C 1.50699 * 119.99942 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.46959 * 299.99950 * 16 14 13 18 18 C 1.52997 * 109.47078 * 59.99862 * 16 14 13 19 19 S 1.81404 * 109.47257 * 184.99874 * 18 16 14 20 20 C 1.81392 * 101.92216 * 180.02562 * 19 18 16 21 21 O 1.42102 * 108.57919 * 294.48998 * 19 18 16 22 22 O 1.42106 * 108.57605 * 65.51473 * 19 18 16 23 23 C 1.50701 * 109.47269 * 180.02562 * 16 14 13 24 24 C 1.38236 * 119.99963 * 299.72793 * 23 16 14 25 25 C 1.38236 * 120.00036 * 179.81111 * 24 23 16 26 26 C 1.38226 * 119.99834 * 0.39071 * 25 24 23 27 27 C 1.38237 * 120.00085 * 359.86461 * 26 25 24 28 28 C 1.38229 * 120.00216 * 120.00036 * 23 16 14 29 29 H 1.09000 * 109.47526 * 60.00106 * 1 2 3 30 30 H 1.08999 * 109.46910 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47325 * 299.99884 * 1 2 3 32 32 H 1.09005 * 109.47243 * 240.00472 * 2 1 3 33 33 H 1.09000 * 109.47526 * 119.99894 * 2 1 3 34 34 H 0.96997 * 119.99666 * 180.02562 * 8 7 5 35 35 H 0.96998 * 119.99994 * 95.00158 * 13 3 2 36 36 H 1.09001 * 109.47630 * 305.00104 * 18 16 14 37 37 H 1.09004 * 109.47346 * 65.00234 * 18 16 14 38 38 H 1.09000 * 109.47342 * 60.00386 * 20 19 18 39 39 H 1.09001 * 109.47306 * 180.02562 * 20 19 18 40 40 H 1.09000 * 109.47384 * 299.99979 * 20 19 18 41 41 H 1.08010 * 119.99941 * 359.97438 * 24 23 16 42 42 H 1.08001 * 119.99466 * 180.23187 * 25 24 23 43 43 H 1.08005 * 120.00406 * 179.83264 * 26 25 24 44 44 H 1.07998 * 120.00065 * 179.97438 * 27 26 25 45 45 H 1.08002 * 120.00084 * 359.97438 * 28 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1239 6 1 4.1471 1.8889 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8814 -1.3819 10 1 6.5549 -0.3501 -0.7603 11 1 6.3829 0.9224 -2.8173 12 1 6.5569 2.0740 -0.6902 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3397 2.6318 0.4344 16 6 0.0366 3.3386 2.6545 17 1 0.0680 2.6145 3.4686 18 6 1.0071 4.4832 2.9523 19 16 0.6180 5.1997 4.5728 20 6 1.8658 6.5088 4.7131 21 8 -0.6661 5.8044 4.5040 22 8 0.8720 4.2224 5.5727 23 6 -1.3614 3.8858 2.5232 24 6 -1.6457 4.8307 1.5550 25 6 -2.9289 5.3298 1.4321 26 6 -3.9259 4.8901 2.2825 27 6 -3.6404 3.9492 3.2542 28 6 -2.3581 3.4472 3.3746 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 3.8293 -0.0617 -2.9495 35 1 2.2719 2.1232 1.9978 36 1 2.0281 4.1015 2.9595 37 1 0.9114 5.2501 2.1836 38 1 1.7444 7.2160 3.8926 39 1 1.7415 7.0290 5.6629 40 1 2.8617 6.0679 4.6684 41 1 -0.8658 5.1769 0.8929 42 1 -3.1518 6.0652 0.6732 43 1 -4.9280 5.2820 2.1883 44 1 -4.4193 3.6059 3.9189 45 1 -2.1351 2.7120 4.1337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597509253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:02 Heat of formation + Delta-G solvation = -106.873767 kcal Electronic energy + Delta-G solvation = -28426.931041 eV Core-core repulsion = 24535.846981 eV Total energy + Delta-G solvation = -3891.084060 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.32849 -39.64604 -37.90517 -36.99275 -36.92795 -35.42155 -34.21410 -32.67187 -31.74557 -30.75341 -30.08612 -28.90498 -26.28189 -24.93005 -23.52796 -22.99186 -21.58417 -20.93211 -19.75051 -19.00369 -17.95872 -17.79257 -17.38366 -17.08968 -16.92476 -16.80901 -16.31117 -16.07819 -15.68776 -15.60181 -14.74127 -14.70865 -14.58079 -14.21966 -14.10199 -13.92527 -13.89493 -13.59988 -13.50416 -13.18620 -13.14742 -12.98271 -12.94471 -12.90625 -12.78340 -12.64301 -12.20796 -12.08741 -12.06128 -11.88090 -11.83629 -11.64979 -11.58223 -11.03226 -10.58640 -10.46401 -9.70353 -9.60018 -9.57666 -8.14375 -6.31552 -0.92938 0.46509 0.62473 1.46265 1.46774 1.56571 1.78270 1.86270 2.35320 2.57082 2.74357 3.04583 3.13838 3.15856 3.45189 3.59790 3.77122 4.09237 4.12555 4.17676 4.21350 4.25401 4.31907 4.39384 4.49138 4.57035 4.62839 4.70086 4.76646 4.85777 4.99166 5.07193 5.14298 5.22052 5.26765 5.43946 5.56929 5.60609 5.63888 5.67493 5.70383 5.80649 5.93617 6.18026 6.20346 6.76812 6.99431 7.35524 7.58738 8.90816 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012644 B = 0.003890 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.884302 B = 7196.488455 C = 8631.905323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 C 0.280 3.720 4 H 0.001 0.999 5 C -0.546 4.546 6 H 0.076 0.924 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.968 3.032 10 H -0.275 1.275 11 H -0.290 1.290 12 H -0.261 1.261 13 N -0.703 5.703 14 C 0.515 3.485 15 O -0.567 6.567 16 C -0.051 4.051 17 H 0.124 0.876 18 C -0.613 4.613 19 S 2.425 3.575 20 C -0.641 4.641 21 O -0.955 6.955 22 O -0.975 6.975 23 C -0.095 4.095 24 C -0.091 4.091 25 C -0.133 4.133 26 C -0.119 4.119 27 C -0.128 4.128 28 C -0.122 4.122 29 H 0.025 0.975 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.263 0.737 35 H 0.403 0.597 36 H 0.164 0.836 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.143 0.857 40 H 0.153 0.847 41 H 0.113 0.887 42 H 0.137 0.863 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.061 12.549 14.298 19.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.162 4.162 3 C 0.177 3.823 4 H 0.019 0.981 5 C -0.584 4.584 6 H 0.094 0.906 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.200 1.200 11 H -0.216 1.216 12 H -0.185 1.185 13 N -0.352 5.352 14 C 0.300 3.700 15 O -0.446 6.446 16 C -0.073 4.073 17 H 0.142 0.858 18 C -0.740 4.740 19 S 2.610 3.390 20 C -0.794 4.794 21 O -0.952 6.952 22 O -0.972 6.972 23 C -0.095 4.095 24 C -0.109 4.109 25 C -0.151 4.151 26 C -0.137 4.137 27 C -0.146 4.146 28 C -0.140 4.140 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.239 0.761 36 H 0.182 0.818 37 H 0.171 0.829 38 H 0.170 0.830 39 H 0.161 0.839 40 H 0.171 0.829 41 H 0.131 0.869 42 H 0.155 0.845 43 H 0.163 0.837 44 H 0.162 0.838 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.252 12.170 14.042 19.605 hybrid contribution 1.736 -0.199 -0.946 1.987 sum -4.515 11.971 13.096 18.308 Atomic orbital electron populations 1.21675 0.97178 0.98981 1.00226 1.21817 0.93545 0.99588 1.01272 1.18354 0.93668 0.88917 0.81355 0.98071 1.21590 0.91342 1.38833 1.06604 0.90611 1.25744 1.03060 0.94463 0.95108 1.70053 1.37010 1.38412 1.09934 0.85411 0.79401 0.78903 0.77010 1.20018 1.21609 1.18499 1.46219 1.15325 1.56024 1.17631 1.20408 0.81915 0.78671 0.89048 1.90695 1.52018 1.60404 1.41517 1.19963 0.92442 0.96941 0.97966 0.85835 1.30544 1.09297 1.09040 1.25126 1.07559 0.77464 0.77672 0.76352 1.30143 1.17957 1.17704 1.13568 1.93599 1.38102 1.77327 1.86204 1.93555 1.86849 1.60953 1.55854 1.19377 0.93822 0.98156 0.98156 1.20943 0.97613 0.96122 0.96263 1.21361 0.92984 1.00766 1.00015 1.21455 1.00025 0.97084 0.95127 1.21353 0.96527 0.97582 0.99128 1.21245 0.93721 0.99953 0.99115 0.95577 0.93923 0.93790 0.91051 0.94113 0.92736 0.76148 0.81780 0.82933 0.82997 0.83859 0.82860 0.86909 0.84521 0.83671 0.83824 0.85258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.51 71.98 0.61 -4.95 16 2 C -0.12 -5.97 5.45 30.59 0.17 -5.80 16 3 C 0.28 13.72 2.24 44.25 0.10 13.82 16 4 H 0.00 0.08 7.58 -2.39 -0.02 0.06 16 5 C -0.55 -27.36 8.73 25.60 0.22 -27.13 16 6 H 0.08 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.02 0.85 5.29 84.65 0.45 1.30 16 8 N -0.92 -51.20 11.29 21.45 0.24 -50.96 16 9 Si 0.97 40.50 29.54 68.60 2.03 42.52 16 10 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 11 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 13 N -0.70 -26.86 4.88 -446.09 -2.18 -29.04 16 14 C 0.51 19.05 5.60 87.66 0.49 19.54 16 15 O -0.57 -25.64 12.26 -3.05 -0.04 -25.68 16 16 C -0.05 -1.42 2.38 -12.29 -0.03 -1.45 16 17 H 0.12 3.06 7.88 -2.39 -0.02 3.04 16 18 C -0.61 -11.68 5.10 71.98 0.37 -11.31 16 19 S 2.42 43.15 5.22 -56.49 -0.29 42.85 16 20 C -0.64 -5.14 10.62 113.37 1.20 -3.93 16 21 O -0.96 -23.53 16.42 -127.37 -2.09 -25.62 16 22 O -0.97 -23.90 18.10 -127.37 -2.31 -26.21 16 23 C -0.09 -2.84 2.73 -19.87 -0.05 -2.89 16 24 C -0.09 -2.77 7.88 22.27 0.18 -2.59 16 25 C -0.13 -3.58 10.05 22.27 0.22 -3.36 16 26 C -0.12 -2.91 10.05 22.27 0.22 -2.69 16 27 C -0.13 -3.24 10.05 22.27 0.22 -3.02 16 28 C -0.12 -3.47 9.40 22.27 0.21 -3.26 16 29 H 0.03 1.26 7.85 -2.39 -0.02 1.24 16 30 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.04 1.91 5.64 -2.39 -0.01 1.90 16 32 H 0.07 3.89 5.95 -2.38 -0.01 3.88 16 33 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 35 H 0.40 12.65 7.90 -92.71 -0.73 11.92 16 36 H 0.16 2.26 7.43 -2.39 -0.02 2.24 16 37 H 0.15 2.50 7.21 -2.39 -0.02 2.48 16 38 H 0.15 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.14 0.88 8.14 -2.39 -0.02 0.87 16 40 H 0.15 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.11 3.39 7.49 -2.91 -0.02 3.36 16 42 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 43 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 44 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 45 H 0.13 3.20 7.95 -2.91 -0.02 3.18 16 Total: -1.00 -77.77 376.90 0.21 -77.56 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: 0.26 Total: 32.30 kcal Atomic # 6 Polarization: -42.31 SS G_CDS: 4.58 Total: -37.73 kcal Atomic # 7 Polarization: -78.06 SS G_CDS: -1.94 Total: -80.00 kcal Atomic # 8 Polarization: -73.08 SS G_CDS: -4.43 Total: -77.51 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.52 kcal Atomic # 16 Polarization: 43.15 SS G_CDS: -0.29 Total: 42.85 kcal Total: -77.77 0.21 -77.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597509253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.315 kcal (2) G-P(sol) polarization free energy of solvation -77.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds