Wall clock time and date at job start Tue Mar 31 2020 22:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47296 * 2 1 4 4 H 1.08993 * 109.47388 * 54.99606 * 3 2 1 5 5 C 1.50703 * 109.47086 * 174.99732 * 3 2 1 6 6 H 1.08004 * 119.99958 * 119.99709 * 5 3 2 7 7 C 1.37872 * 119.99941 * 299.99853 * 5 3 2 8 8 N 1.31509 * 120.00325 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99940 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47153 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47236 * 119.99796 * 9 7 5 12 12 H 1.48499 * 109.47252 * 240.00078 * 9 7 5 13 13 N 1.46500 * 109.46642 * 294.99588 * 3 2 1 14 14 C 1.34776 * 120.00117 * 85.00512 * 13 3 2 15 15 O 1.21285 * 119.99794 * 355.18179 * 14 13 3 16 16 C 1.50703 * 120.00140 * 174.91390 * 14 13 3 17 17 H 1.08998 * 109.46916 * 63.86360 * 16 14 13 18 18 C 1.53000 * 109.46753 * 303.86642 * 16 14 13 19 19 S 1.81405 * 109.46734 * 173.90294 * 18 16 14 20 20 C 1.81394 * 101.91938 * 175.96880 * 19 18 16 21 21 O 1.42103 * 108.57933 * 290.45701 * 19 18 16 22 22 O 1.42096 * 108.57720 * 61.48517 * 19 18 16 23 23 C 1.50696 * 109.47108 * 183.86258 * 16 14 13 24 24 C 1.38239 * 119.99817 * 59.72796 * 23 16 14 25 25 C 1.38236 * 120.00024 * 179.78947 * 24 23 16 26 26 C 1.38233 * 119.99909 * 0.43691 * 25 24 23 27 27 C 1.38235 * 119.99799 * 359.81232 * 26 25 24 28 28 C 1.38226 * 120.00329 * 239.99807 * 23 16 14 29 29 H 1.09005 * 109.47176 * 300.00730 * 1 2 3 30 30 H 1.09002 * 109.46567 * 60.00188 * 1 2 3 31 31 H 1.08991 * 109.47020 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47465 * 239.99578 * 2 1 3 33 33 H 1.09008 * 109.47113 * 119.99427 * 2 1 3 34 34 H 0.97004 * 120.00141 * 180.02562 * 8 7 5 35 35 H 0.97004 * 120.00213 * 265.00043 * 13 3 2 36 36 H 1.08997 * 109.46816 * 293.90169 * 18 16 14 37 37 H 1.09000 * 109.47330 * 53.90455 * 18 16 14 38 38 H 1.08999 * 109.47473 * 59.99983 * 20 19 18 39 39 H 1.09002 * 109.46984 * 179.97438 * 20 19 18 40 40 H 1.09004 * 109.47547 * 300.00281 * 20 19 18 41 41 H 1.08004 * 119.99743 * 359.97438 * 24 23 16 42 42 H 1.08001 * 119.99724 * 180.27723 * 25 24 23 43 43 H 1.08002 * 119.99756 * 179.83958 * 26 25 24 44 44 H 1.08003 * 120.00120 * 179.97438 * 27 26 25 45 45 H 1.08001 * 119.99873 * 359.97438 * 28 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5420 1.4443 0.1239 6 1 4.1473 1.8888 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0049 0.8812 1.3820 10 1 6.5988 1.5462 0.1944 11 1 6.3989 1.6167 2.6103 12 1 6.4970 -0.5175 1.4632 13 7 1.6525 2.0974 -1.2519 14 6 0.4353 2.6644 -1.3671 15 8 -0.3712 2.5571 -0.4677 16 6 0.0784 3.4367 -2.6110 17 1 0.0794 2.7643 -3.4689 18 6 1.1058 4.5485 -2.8332 19 16 0.7823 5.3620 -4.4220 20 6 2.0124 6.6951 -4.4178 21 8 1.1012 4.4549 -5.4684 22 8 -0.5141 5.9421 -4.3778 23 6 -1.2915 4.0434 -2.4499 24 6 -1.5377 4.9303 -1.4184 25 6 -2.7932 5.4902 -1.2732 26 6 -3.8050 5.1564 -2.1539 27 6 -3.5601 4.2657 -3.1823 28 6 -2.3035 3.7090 -3.3301 29 1 -0.3634 0.5140 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8292 -0.0602 2.9504 35 1 2.2720 2.1230 -1.9979 36 1 1.0296 5.2796 -2.0285 37 1 2.1083 4.1205 -2.8417 38 1 3.0125 6.2665 -4.3525 39 1 1.9246 7.2734 -5.3375 40 1 1.8396 7.3462 -3.5608 41 1 -0.7483 5.1879 -0.7278 42 1 -2.9843 6.1865 -0.4700 43 1 -4.7866 5.5919 -2.0389 44 1 -4.3507 4.0045 -3.8703 45 1 -2.1122 3.0131 -4.1336 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597509254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:07 Heat of formation + Delta-G solvation = -81.230786 kcal Electronic energy + Delta-G solvation = -28436.452580 eV Core-core repulsion = 24546.480483 eV Total energy + Delta-G solvation = -3889.972097 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.01786 -38.38190 -37.04868 -36.10658 -35.22040 -34.25128 -32.38835 -30.91214 -30.71024 -30.01735 -29.21789 -27.06862 -25.12112 -23.12329 -22.46010 -21.68372 -19.98102 -19.33606 -18.96539 -17.54940 -16.93217 -16.56284 -16.26483 -16.09423 -15.68358 -15.36372 -15.11680 -14.69707 -14.29253 -14.24142 -13.75280 -13.53158 -13.41351 -13.21869 -13.08819 -12.90603 -12.69823 -12.29670 -12.20615 -12.08733 -12.03363 -11.68385 -11.47248 -11.31157 -11.25002 -11.03454 -10.92634 -10.89287 -10.83827 -10.79328 -10.34892 -10.20526 -9.63252 -9.11132 -9.03657 -8.61642 -8.56818 -8.49053 -7.88183 -6.18434 -4.28468 -0.19292 1.52628 1.68668 2.56191 3.14102 3.18410 3.26830 3.28387 3.53130 3.82696 3.86226 4.15683 4.32634 4.39472 4.54747 4.58532 4.69496 4.84726 5.09048 5.13102 5.18052 5.28620 5.29565 5.39037 5.45799 5.56431 5.70099 5.84645 6.16501 6.25219 6.39347 6.46953 6.64123 6.66112 6.71225 6.77433 7.03454 7.17183 7.22335 7.33016 7.39595 7.56883 7.67914 7.83986 8.13298 8.58189 8.70517 9.04002 9.39281 10.86714 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012459 B = 0.003933 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.886079 B = 7117.474570 C = 8564.449261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.880 5.880 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.707 5.707 14 C 0.513 3.487 15 O -0.526 6.526 16 C -0.055 4.055 17 H 0.110 0.890 18 C -0.605 4.605 19 S 2.416 3.584 20 C -0.660 4.660 21 O -0.940 6.940 22 O -0.919 6.919 23 C -0.077 4.077 24 C -0.074 4.074 25 C -0.122 4.122 26 C -0.115 4.115 27 C -0.120 4.120 28 C -0.098 4.098 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.020 0.980 32 H 0.031 0.969 33 H 0.098 0.902 34 H 0.264 0.736 35 H 0.387 0.613 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.919 11.710 -11.844 17.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.355 5.355 14 C 0.296 3.704 15 O -0.403 6.403 16 C -0.078 4.078 17 H 0.128 0.872 18 C -0.733 4.733 19 S 2.597 3.403 20 C -0.809 4.809 21 O -0.937 6.937 22 O -0.916 6.916 23 C -0.078 4.078 24 C -0.092 4.092 25 C -0.140 4.140 26 C -0.133 4.133 27 C -0.138 4.138 28 C -0.116 4.116 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.040 0.960 32 H 0.050 0.950 33 H 0.116 0.884 34 H 0.074 0.926 35 H 0.220 0.780 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.070 11.338 -11.621 17.708 hybrid contribution 2.086 0.128 0.432 2.134 sum -4.985 11.465 -11.189 16.777 Atomic orbital electron populations 1.21867 0.98158 0.97947 1.01461 1.21946 0.92757 0.99773 1.02263 1.18808 0.94166 0.89306 0.80661 0.93362 1.21253 0.90660 1.39202 1.06287 0.92048 1.24879 0.98561 0.94757 0.95406 1.69903 1.35064 1.37491 1.09302 0.86420 0.84883 0.77865 0.78067 1.19768 1.20907 1.20842 1.46498 1.14395 1.56120 1.18511 1.19740 0.83098 0.80198 0.87394 1.90719 1.48771 1.60317 1.40517 1.20037 0.91569 0.95214 1.00980 0.87214 1.30444 1.08539 1.10754 1.23593 1.08060 0.77117 0.77590 0.77527 1.30313 1.19043 1.19900 1.11672 1.93603 1.85405 1.62656 1.52006 1.93649 1.34310 1.77488 1.86185 1.19205 0.93478 0.97955 0.97132 1.20810 0.97208 0.95351 0.95841 1.21018 0.93297 1.00361 0.99293 1.21062 0.98759 0.98044 0.95422 1.20944 0.96574 0.97830 0.98408 1.20902 0.93087 0.99177 0.98456 0.93213 0.93952 0.96044 0.95027 0.88361 0.92571 0.78028 0.84135 0.83946 0.85233 0.85383 0.85229 0.86376 0.86366 0.86542 0.86361 0.86433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.46 37.16 0.31 -2.73 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.49 2.24 -69.08 -0.15 6.33 16 4 H 0.05 1.34 7.65 -51.93 -0.40 0.94 16 5 C -0.54 -13.42 8.73 -34.44 -0.30 -13.72 16 6 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.96 11.29 55.43 0.63 -23.33 16 9 Si 0.90 19.87 29.54 -169.99 -5.02 14.85 16 10 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.71 -13.49 4.80 -54.93 -0.26 -13.76 16 14 C 0.51 9.37 5.78 -10.98 -0.06 9.31 16 15 O -0.53 -11.44 12.00 5.55 0.07 -11.37 16 16 C -0.06 -0.78 2.37 -92.92 -0.22 -1.00 16 17 H 0.11 1.37 7.88 -51.93 -0.41 0.96 16 18 C -0.60 -6.23 5.11 37.16 0.19 -6.04 16 19 S 2.42 23.51 5.30 -107.50 -0.57 22.94 16 20 C -0.66 -3.98 10.62 101.05 1.07 -2.91 16 21 O -0.94 -12.13 18.10 -57.83 -1.05 -13.17 16 22 O -0.92 -11.66 16.11 -57.83 -0.93 -12.59 16 23 C -0.08 -1.15 2.71 -104.63 -0.28 -1.43 16 24 C -0.07 -1.10 7.91 -39.58 -0.31 -1.42 16 25 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 26 C -0.11 -1.47 10.05 -39.58 -0.40 -1.86 16 27 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 28 C -0.10 -1.40 9.19 -39.59 -0.36 -1.76 16 29 H 0.05 1.18 7.80 -51.93 -0.40 0.77 16 30 H 0.04 0.92 5.53 -51.93 -0.29 0.63 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 2.60 5.95 -51.92 -0.31 2.29 16 34 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.39 6.31 7.82 -40.82 -0.32 5.99 16 36 H 0.14 1.23 7.21 -51.93 -0.37 0.86 16 37 H 0.14 1.19 7.28 -51.92 -0.38 0.81 16 38 H 0.13 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.13 0.67 8.14 -51.92 -0.42 0.24 16 40 H 0.13 0.58 8.14 -51.92 -0.42 0.15 16 41 H 0.12 1.71 7.55 -52.48 -0.40 1.31 16 42 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 43 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 44 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 45 H 0.12 1.46 7.95 -52.49 -0.42 1.04 16 LS Contribution 376.00 15.07 5.67 5.67 Total: -1.00 -34.64 376.00 -9.64 -44.28 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -6.62 Total: 9.27 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -1.56 Total: -22.79 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.36 Total: -37.09 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -1.91 Total: -37.13 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 16 Polarization: 23.51 SS G_CDS: -0.57 Total: 22.94 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.64 -9.64 -44.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597509254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.950 kcal (2) G-P(sol) polarization free energy of solvation -34.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds