Wall clock time and date at job start Tue Mar 31 2020 22:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47296 * 2 1 4 4 H 1.08993 * 109.47388 * 54.99606 * 3 2 1 5 5 C 1.50703 * 109.47086 * 174.99732 * 3 2 1 6 6 H 1.08004 * 119.99958 * 119.99709 * 5 3 2 7 7 C 1.37872 * 119.99941 * 299.99853 * 5 3 2 8 8 N 1.31509 * 120.00325 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99940 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47153 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47236 * 119.99796 * 9 7 5 12 12 H 1.48499 * 109.47252 * 240.00078 * 9 7 5 13 13 N 1.46500 * 109.46642 * 294.99588 * 3 2 1 14 14 C 1.34776 * 120.00117 * 85.00512 * 13 3 2 15 15 O 1.21285 * 119.99794 * 355.18179 * 14 13 3 16 16 C 1.50703 * 120.00140 * 174.91390 * 14 13 3 17 17 H 1.08998 * 109.46916 * 63.86360 * 16 14 13 18 18 C 1.53000 * 109.46753 * 303.86642 * 16 14 13 19 19 S 1.81405 * 109.46734 * 173.90294 * 18 16 14 20 20 C 1.81394 * 101.91938 * 175.96880 * 19 18 16 21 21 O 1.42103 * 108.57933 * 290.45701 * 19 18 16 22 22 O 1.42096 * 108.57720 * 61.48517 * 19 18 16 23 23 C 1.50696 * 109.47108 * 183.86258 * 16 14 13 24 24 C 1.38239 * 119.99817 * 59.72796 * 23 16 14 25 25 C 1.38236 * 120.00024 * 179.78947 * 24 23 16 26 26 C 1.38233 * 119.99909 * 0.43691 * 25 24 23 27 27 C 1.38235 * 119.99799 * 359.81232 * 26 25 24 28 28 C 1.38226 * 120.00329 * 239.99807 * 23 16 14 29 29 H 1.09005 * 109.47176 * 300.00730 * 1 2 3 30 30 H 1.09002 * 109.46567 * 60.00188 * 1 2 3 31 31 H 1.08991 * 109.47020 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47465 * 239.99578 * 2 1 3 33 33 H 1.09008 * 109.47113 * 119.99427 * 2 1 3 34 34 H 0.97004 * 120.00141 * 180.02562 * 8 7 5 35 35 H 0.97004 * 120.00213 * 265.00043 * 13 3 2 36 36 H 1.08997 * 109.46816 * 293.90169 * 18 16 14 37 37 H 1.09000 * 109.47330 * 53.90455 * 18 16 14 38 38 H 1.08999 * 109.47473 * 59.99983 * 20 19 18 39 39 H 1.09002 * 109.46984 * 179.97438 * 20 19 18 40 40 H 1.09004 * 109.47547 * 300.00281 * 20 19 18 41 41 H 1.08004 * 119.99743 * 359.97438 * 24 23 16 42 42 H 1.08001 * 119.99724 * 180.27723 * 25 24 23 43 43 H 1.08002 * 119.99756 * 179.83958 * 26 25 24 44 44 H 1.08003 * 120.00120 * 179.97438 * 27 26 25 45 45 H 1.08001 * 119.99873 * 359.97438 * 28 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5420 1.4443 0.1239 6 1 4.1473 1.8888 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0049 0.8812 1.3820 10 1 6.5988 1.5462 0.1944 11 1 6.3989 1.6167 2.6103 12 1 6.4970 -0.5175 1.4632 13 7 1.6525 2.0974 -1.2519 14 6 0.4353 2.6644 -1.3671 15 8 -0.3712 2.5571 -0.4677 16 6 0.0784 3.4367 -2.6110 17 1 0.0794 2.7643 -3.4689 18 6 1.1058 4.5485 -2.8332 19 16 0.7823 5.3620 -4.4220 20 6 2.0124 6.6951 -4.4178 21 8 1.1012 4.4549 -5.4684 22 8 -0.5141 5.9421 -4.3778 23 6 -1.2915 4.0434 -2.4499 24 6 -1.5377 4.9303 -1.4184 25 6 -2.7932 5.4902 -1.2732 26 6 -3.8050 5.1564 -2.1539 27 6 -3.5601 4.2657 -3.1823 28 6 -2.3035 3.7090 -3.3301 29 1 -0.3634 0.5140 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8292 -0.0602 2.9504 35 1 2.2720 2.1230 -1.9979 36 1 1.0296 5.2796 -2.0285 37 1 2.1083 4.1205 -2.8417 38 1 3.0125 6.2665 -4.3525 39 1 1.9246 7.2734 -5.3375 40 1 1.8396 7.3462 -3.5608 41 1 -0.7483 5.1879 -0.7278 42 1 -2.9843 6.1865 -0.4700 43 1 -4.7866 5.5919 -2.0389 44 1 -4.3507 4.0045 -3.8703 45 1 -2.1122 3.0131 -4.1336 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597509254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:06 Heat of formation + Delta-G solvation = -105.411345 kcal Electronic energy + Delta-G solvation = -28437.501128 eV Core-core repulsion = 24546.480483 eV Total energy + Delta-G solvation = -3891.020645 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.33029 -39.64392 -37.90214 -36.98572 -36.92111 -35.43872 -34.20803 -32.66301 -31.73497 -30.73646 -30.08733 -28.88659 -26.27432 -24.93298 -23.52594 -22.98906 -21.57884 -20.92109 -19.74947 -19.00065 -17.95752 -17.79477 -17.37767 -17.08018 -16.91118 -16.82026 -16.30679 -16.08883 -15.68407 -15.59279 -14.76063 -14.70215 -14.58576 -14.19861 -14.08331 -13.91070 -13.89054 -13.58129 -13.51951 -13.18209 -13.15180 -12.98048 -12.93518 -12.87889 -12.77031 -12.68136 -12.20245 -12.07729 -12.04844 -11.86825 -11.82806 -11.64374 -11.55658 -11.02358 -10.57434 -10.46556 -9.69167 -9.59184 -9.55691 -8.14578 -6.31652 -0.92399 0.48158 0.63441 1.44960 1.47014 1.57670 1.77804 1.86298 2.35670 2.57740 2.73657 3.05671 3.13923 3.15872 3.46403 3.59711 3.77126 4.09811 4.12892 4.17781 4.22004 4.25580 4.32577 4.39861 4.50347 4.59183 4.63926 4.71057 4.78473 4.86394 4.99450 5.08443 5.15446 5.22849 5.28095 5.45535 5.57483 5.61755 5.64182 5.68388 5.71305 5.80986 5.93950 6.18247 6.21335 6.77037 6.99603 7.35508 7.58480 8.90833 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012459 B = 0.003933 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.886079 B = 7117.474570 C = 8564.449261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 C 0.281 3.719 4 H 0.001 0.999 5 C -0.544 4.544 6 H 0.076 0.924 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.967 3.033 10 H -0.257 1.257 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.703 5.703 14 C 0.514 3.486 15 O -0.564 6.564 16 C -0.051 4.051 17 H 0.123 0.877 18 C -0.613 4.613 19 S 2.426 3.574 20 C -0.641 4.641 21 O -0.976 6.976 22 O -0.954 6.954 23 C -0.090 4.090 24 C -0.095 4.095 25 C -0.133 4.133 26 C -0.120 4.120 27 C -0.127 4.127 28 C -0.119 4.119 29 H 0.025 0.975 30 H 0.046 0.954 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.070 0.930 34 H 0.263 0.737 35 H 0.403 0.597 36 H 0.153 0.847 37 H 0.162 0.838 38 H 0.152 0.848 39 H 0.143 0.857 40 H 0.151 0.849 41 H 0.112 0.888 42 H 0.137 0.863 43 H 0.145 0.855 44 H 0.143 0.857 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.849 13.177 -13.604 19.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.162 4.162 3 C 0.178 3.822 4 H 0.019 0.981 5 C -0.582 4.582 6 H 0.094 0.906 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.181 1.181 11 H -0.212 1.212 12 H -0.210 1.210 13 N -0.352 5.352 14 C 0.298 3.702 15 O -0.444 6.444 16 C -0.073 4.073 17 H 0.141 0.859 18 C -0.740 4.740 19 S 2.611 3.389 20 C -0.794 4.794 21 O -0.973 6.973 22 O -0.951 6.951 23 C -0.090 4.090 24 C -0.113 4.113 25 C -0.151 4.151 26 C -0.138 4.138 27 C -0.145 4.145 28 C -0.137 4.137 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.238 0.762 36 H 0.171 0.829 37 H 0.180 0.820 38 H 0.171 0.829 39 H 0.161 0.839 40 H 0.170 0.830 41 H 0.130 0.870 42 H 0.154 0.846 43 H 0.163 0.837 44 H 0.161 0.839 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.022 12.786 -13.419 19.489 hybrid contribution 1.711 -0.257 0.987 1.992 sum -4.311 12.529 -12.432 18.169 Atomic orbital electron populations 1.21702 0.97093 0.98745 1.00445 1.21821 0.93615 0.99637 1.01171 1.18355 0.93655 0.88938 0.81241 0.98117 1.21621 0.91320 1.38717 1.06574 0.90558 1.25739 1.03037 0.94461 0.95147 1.70060 1.36947 1.38522 1.09904 0.85367 0.79447 0.77653 0.78277 1.18068 1.21172 1.20960 1.46221 1.15344 1.56139 1.17544 1.20421 0.82015 0.79431 0.88303 1.90700 1.49800 1.61432 1.42444 1.19954 0.92530 0.96157 0.98634 0.85912 1.30552 1.08328 1.10165 1.24960 1.07531 0.77299 0.77869 0.76250 1.30143 1.17849 1.17801 1.13598 1.93556 1.85998 1.64713 1.53045 1.93603 1.37314 1.77896 1.86266 1.19339 0.93972 0.98226 0.97511 1.20938 0.97910 0.96280 0.96209 1.21350 0.93099 1.00598 1.00062 1.21445 0.99815 0.97687 0.94820 1.21344 0.96850 0.97449 0.98882 1.21211 0.93618 0.99845 0.98982 0.95590 0.93521 0.94218 0.94210 0.91141 0.92746 0.76162 0.82886 0.81966 0.82934 0.83857 0.83033 0.86976 0.84552 0.83726 0.83895 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.46 71.98 0.61 -4.95 16 2 C -0.12 -5.99 5.45 30.60 0.17 -5.83 16 3 C 0.28 13.72 2.24 44.25 0.10 13.82 16 4 H 0.00 0.05 7.65 -2.39 -0.02 0.04 16 5 C -0.54 -27.18 8.73 25.60 0.22 -26.95 16 6 H 0.08 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.92 -51.12 11.29 21.44 0.24 -50.87 16 9 Si 0.97 40.42 29.54 68.60 2.03 42.44 16 10 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 11 H -0.29 -11.97 7.11 99.48 0.71 -11.27 16 12 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 13 N -0.70 -26.78 4.80 -446.09 -2.14 -28.92 16 14 C 0.51 18.92 5.78 87.66 0.51 19.43 16 15 O -0.56 -25.37 12.00 -3.04 -0.04 -25.41 16 16 C -0.05 -1.40 2.37 -12.29 -0.03 -1.43 16 17 H 0.12 3.01 7.88 -2.39 -0.02 2.99 16 18 C -0.61 -11.75 5.11 71.98 0.37 -11.38 16 19 S 2.43 43.08 5.30 -56.49 -0.30 42.78 16 20 C -0.64 -5.27 10.62 113.37 1.20 -4.06 16 21 O -0.98 -23.97 18.10 -127.37 -2.31 -26.27 16 22 O -0.95 -23.30 16.11 -127.37 -2.05 -25.35 16 23 C -0.09 -2.68 2.71 -19.87 -0.05 -2.73 16 24 C -0.10 -2.86 7.91 22.27 0.18 -2.69 16 25 C -0.13 -3.55 10.05 22.27 0.22 -3.32 16 26 C -0.12 -2.91 10.05 22.27 0.22 -2.68 16 27 C -0.13 -3.20 10.05 22.27 0.22 -2.98 16 28 C -0.12 -3.33 9.19 22.27 0.20 -3.13 16 29 H 0.02 1.26 7.80 -2.38 -0.02 1.24 16 30 H 0.05 2.05 5.53 -2.39 -0.01 2.03 16 31 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.07 3.85 5.95 -2.38 -0.01 3.83 16 34 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 35 H 0.40 12.66 7.82 -92.71 -0.72 11.93 16 36 H 0.15 2.50 7.21 -2.39 -0.02 2.48 16 37 H 0.16 2.35 7.28 -2.39 -0.02 2.33 16 38 H 0.15 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.15 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.11 3.35 7.55 -2.91 -0.02 3.33 16 42 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 43 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 44 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 45 H 0.13 3.15 7.95 -2.91 -0.02 3.13 16 Total: -1.00 -77.34 376.00 0.30 -77.04 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: 0.27 Total: 32.16 kcal Atomic # 6 Polarization: -42.20 SS G_CDS: 4.59 Total: -37.60 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -1.90 Total: -79.80 kcal Atomic # 8 Polarization: -72.64 SS G_CDS: -4.39 Total: -77.03 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.44 kcal Atomic # 16 Polarization: 43.08 SS G_CDS: -0.30 Total: 42.78 kcal Total: -77.34 0.30 -77.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597509254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.367 kcal (2) G-P(sol) polarization free energy of solvation -77.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds