Wall clock time and date at job start Tue Mar 31 2020 22:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46956 * 2 1 4 4 H 1.09000 * 109.47373 * 305.00876 * 3 2 1 5 5 C 1.50696 * 109.47333 * 185.00038 * 3 2 1 6 6 H 1.08006 * 120.00286 * 240.00600 * 5 3 2 7 7 C 1.37882 * 119.99844 * 59.99908 * 5 3 2 8 8 N 1.31509 * 119.99805 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99879 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47437 * 90.00154 * 9 7 5 11 11 H 1.48497 * 109.47108 * 210.00003 * 9 7 5 12 12 H 1.48506 * 109.47469 * 330.00285 * 9 7 5 13 13 N 1.46505 * 109.47039 * 64.99874 * 3 2 1 14 14 C 1.34774 * 120.00295 * 275.00129 * 13 3 2 15 15 O 1.21277 * 120.00016 * 354.81434 * 14 13 3 16 16 C 1.50700 * 119.99997 * 174.81768 * 14 13 3 17 17 H 1.09004 * 109.47053 * 64.44131 * 16 14 13 18 18 C 1.53006 * 109.47234 * 304.44333 * 16 14 13 19 19 S 1.81403 * 109.47063 * 174.19610 * 18 16 14 20 20 C 1.81405 * 101.91820 * 185.17167 * 19 18 16 21 21 O 1.42093 * 108.57657 * 299.65732 * 19 18 16 22 22 O 1.42096 * 108.57641 * 70.68884 * 19 18 16 23 23 C 1.50702 * 109.47128 * 184.44213 * 16 14 13 24 24 C 1.38235 * 120.00114 * 239.99993 * 23 16 14 25 25 C 1.38229 * 120.00281 * 180.02562 * 24 23 16 26 26 C 1.38241 * 119.99494 * 359.95645 * 25 24 23 27 27 C 1.38226 * 120.00200 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99738 * 59.98187 * 23 16 14 29 29 H 1.09004 * 109.47305 * 299.99672 * 1 2 3 30 30 H 1.09000 * 109.47768 * 59.99779 * 1 2 3 31 31 H 1.08998 * 109.46919 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47004 * 240.00654 * 2 1 3 33 33 H 1.08994 * 109.47125 * 120.00307 * 2 1 3 34 34 H 0.96999 * 120.00205 * 179.97438 * 8 7 5 35 35 H 0.97009 * 119.99503 * 94.99714 * 13 3 2 36 36 H 1.09000 * 109.46719 * 294.19922 * 18 16 14 37 37 H 1.09005 * 109.47054 * 54.19940 * 18 16 14 38 38 H 1.08994 * 109.46934 * 60.00337 * 20 19 18 39 39 H 1.08999 * 109.46753 * 180.02562 * 20 19 18 40 40 H 1.09003 * 109.46852 * 300.00053 * 20 19 18 41 41 H 1.08001 * 119.99949 * 359.97438 * 24 23 16 42 42 H 1.07992 * 120.00297 * 179.97438 * 25 24 23 43 43 H 1.08003 * 119.99250 * 179.72573 * 26 25 24 44 44 H 1.08001 * 119.99925 * 179.97438 * 27 26 25 45 45 H 1.08000 * 119.99830 * 359.97438 * 28 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9816 -0.8417 5 6 3.5418 1.4444 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0049 0.8802 -1.3812 10 1 6.5539 -0.3518 -0.7599 11 1 6.3834 0.9216 -2.8165 12 1 6.5575 2.0722 -0.6889 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6643 1.3670 15 8 -0.3034 2.7155 0.4063 16 6 -0.0085 3.2346 2.6896 17 1 0.6322 4.0753 2.9559 18 6 0.0911 2.1553 3.7695 19 16 -0.2774 2.8847 5.3891 20 6 0.0505 1.4957 6.5089 21 8 0.6710 3.9102 5.6500 22 8 -1.6637 3.1917 5.4425 23 6 -1.4358 3.7057 2.5802 24 6 -1.7451 5.0333 2.8096 25 6 -3.0543 5.4653 2.7098 26 6 -4.0543 4.5697 2.3797 27 6 -3.7449 3.2424 2.1489 28 6 -2.4358 2.8101 2.2501 29 1 -0.3634 0.5138 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8291 -0.0602 -2.9503 35 1 2.2719 2.1231 1.9979 36 1 -0.6252 1.3616 3.5570 37 1 1.0996 1.7420 3.7782 38 1 1.0900 1.1842 6.4066 39 1 -0.1368 1.8058 7.5369 40 1 -0.6052 0.6625 6.2558 41 1 -0.9638 5.7329 3.0676 42 1 -3.2959 6.5024 2.8894 43 1 -5.0779 4.9064 2.3060 44 1 -4.5262 2.5427 1.8914 45 1 -2.1940 1.7730 2.0702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597509255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:10 Heat of formation + Delta-G solvation = -83.481016 kcal Electronic energy + Delta-G solvation = -28523.092768 eV Core-core repulsion = 24633.023094 eV Total energy + Delta-G solvation = -3890.069674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.03227 -38.37882 -37.07081 -36.12044 -35.23718 -34.25420 -32.38101 -30.97276 -30.74088 -30.05610 -29.24643 -27.07138 -25.13734 -23.18720 -22.45473 -21.69029 -20.01708 -19.36667 -18.97257 -17.53158 -16.96339 -16.61445 -16.28962 -16.06505 -15.74241 -15.37968 -15.02343 -14.74664 -14.33526 -14.14496 -13.79910 -13.56840 -13.44076 -13.24380 -13.15221 -12.85454 -12.64521 -12.48189 -12.16172 -12.11095 -12.06788 -11.80277 -11.44562 -11.32596 -11.27796 -11.06488 -10.93301 -10.90483 -10.84448 -10.80396 -10.36069 -10.25411 -9.73578 -9.13025 -9.05314 -8.65065 -8.56442 -8.53186 -7.90259 -6.17375 -4.26968 -0.21356 1.49373 1.65973 2.54895 3.14539 3.20644 3.28413 3.30312 3.52520 3.80694 3.84487 4.14543 4.34592 4.37312 4.52659 4.55680 4.68084 4.84053 5.07758 5.14343 5.16288 5.26803 5.28055 5.36921 5.44458 5.56305 5.68213 5.82827 6.14106 6.22503 6.27779 6.33016 6.54185 6.61830 6.69110 6.75096 6.91340 7.10797 7.19531 7.26951 7.36820 7.54945 7.65921 7.83864 8.11406 8.58152 8.72229 9.04304 9.40635 10.87895 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013271 B = 0.003771 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.296621 B = 7423.757914 C = 8488.349149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.708 5.708 14 C 0.516 3.484 15 O -0.529 6.529 16 C -0.056 4.056 17 H 0.114 0.886 18 C -0.606 4.606 19 S 2.417 3.583 20 C -0.661 4.661 21 O -0.937 6.937 22 O -0.921 6.921 23 C -0.083 4.083 24 C -0.104 4.104 25 C -0.120 4.120 26 C -0.114 4.114 27 C -0.121 4.121 28 C -0.071 4.071 29 H 0.035 0.965 30 H 0.050 0.950 31 H 0.024 0.976 32 H 0.100 0.900 33 H 0.031 0.969 34 H 0.265 0.735 35 H 0.387 0.613 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.415 2.230 15.631 18.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.356 5.356 14 C 0.299 3.701 15 O -0.406 6.406 16 C -0.079 4.079 17 H 0.132 0.868 18 C -0.734 4.734 19 S 2.598 3.402 20 C -0.810 4.810 21 O -0.934 6.934 22 O -0.918 6.918 23 C -0.083 4.083 24 C -0.122 4.122 25 C -0.138 4.138 26 C -0.132 4.132 27 C -0.139 4.139 28 C -0.089 4.089 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.118 0.882 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.219 0.781 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.195 2.982 14.939 18.331 hybrid contribution 1.695 -1.024 0.052 1.981 sum -8.500 1.958 14.991 17.344 Atomic orbital electron populations 1.21842 0.98545 0.98193 1.01059 1.21941 0.92436 0.99870 1.02375 1.18808 0.94306 0.89017 0.81038 0.93087 1.21227 0.90679 1.39105 1.06382 0.92055 1.24877 0.98603 0.94784 0.95336 1.69883 1.35163 1.37542 1.09318 0.86465 0.84860 0.78440 0.77441 1.20576 1.21065 1.19821 1.46481 1.14362 1.56017 1.18722 1.19727 0.82961 0.78954 0.88480 1.90709 1.53836 1.57265 1.38820 1.20062 0.95982 0.97359 0.94511 0.86793 1.30452 1.13150 1.10530 1.19252 1.08038 0.76038 0.77791 0.78347 1.30324 1.12262 1.21144 1.17260 1.93600 1.64045 1.52125 1.83673 1.93637 1.30808 1.82042 1.85359 1.19260 0.92792 0.94315 1.01962 1.20981 0.97009 0.94593 0.99645 1.20971 0.92832 0.99415 1.00618 1.21082 0.98934 0.93677 0.99501 1.21029 0.96279 0.95972 1.00574 1.20817 0.92390 0.99353 0.96365 0.94549 0.93051 0.95669 0.88177 0.95027 0.92533 0.78056 0.84144 0.84080 0.85198 0.85351 0.85248 0.86161 0.86238 0.86442 0.86286 0.86370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.58 37.16 0.32 -2.55 16 2 C -0.13 -2.90 5.45 -26.73 -0.15 -3.05 16 3 C 0.27 6.43 2.25 -69.08 -0.16 6.28 16 4 H 0.05 1.44 7.51 -51.93 -0.39 1.05 16 5 C -0.54 -13.59 8.73 -34.44 -0.30 -13.89 16 6 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.04 11.29 55.43 0.63 -23.41 16 9 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 N -0.71 -13.52 4.80 -54.93 -0.26 -13.78 16 14 C 0.52 9.50 5.41 -10.99 -0.06 9.44 16 15 O -0.53 -11.68 12.83 5.56 0.07 -11.61 16 16 C -0.06 -0.80 2.37 -92.92 -0.22 -1.02 16 17 H 0.11 1.46 7.80 -51.93 -0.40 1.05 16 18 C -0.61 -6.16 5.08 37.16 0.19 -5.97 16 19 S 2.42 23.49 5.14 -107.50 -0.55 22.94 16 20 C -0.66 -3.85 10.62 101.05 1.07 -2.77 16 21 O -0.94 -12.04 18.00 -57.83 -1.04 -13.08 16 22 O -0.92 -11.78 16.95 -57.83 -0.98 -12.76 16 23 C -0.08 -1.25 2.87 -104.62 -0.30 -1.55 16 24 C -0.10 -1.50 9.66 -39.59 -0.38 -1.88 16 25 C -0.12 -1.59 10.05 -39.58 -0.40 -1.98 16 26 C -0.11 -1.46 10.05 -39.58 -0.40 -1.86 16 27 C -0.12 -1.64 10.05 -39.59 -0.40 -2.04 16 28 C -0.07 -1.07 7.95 -39.58 -0.31 -1.38 16 29 H 0.04 0.69 5.75 -51.93 -0.30 0.40 16 30 H 0.05 1.16 7.92 -51.93 -0.41 0.75 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.10 2.57 5.95 -51.93 -0.31 2.26 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.39 6.26 7.79 -40.82 -0.32 5.94 16 36 H 0.14 1.23 7.20 -51.92 -0.37 0.86 16 37 H 0.14 1.10 7.26 -51.92 -0.38 0.72 16 38 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.13 0.65 8.14 -51.92 -0.42 0.22 16 40 H 0.13 0.54 8.14 -51.92 -0.42 0.12 16 41 H 0.12 1.52 7.95 -52.49 -0.42 1.10 16 42 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 44 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.12 1.71 7.54 -52.49 -0.40 1.32 16 LS Contribution 377.88 15.07 5.69 5.69 Total: -1.00 -34.91 377.88 -9.67 -44.58 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -6.62 Total: 8.92 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: -1.58 Total: -22.57 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.36 Total: -37.19 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -1.95 Total: -37.45 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 23.49 SS G_CDS: -0.55 Total: 22.94 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.91 -9.67 -44.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597509255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.906 kcal (2) G-P(sol) polarization free energy of solvation -34.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds