Wall clock time and date at job start Tue Mar 31 2020 22:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46956 * 2 1 4 4 H 1.09000 * 109.47373 * 305.00876 * 3 2 1 5 5 C 1.50696 * 109.47333 * 185.00038 * 3 2 1 6 6 H 1.08006 * 120.00286 * 240.00600 * 5 3 2 7 7 C 1.37882 * 119.99844 * 59.99908 * 5 3 2 8 8 N 1.31509 * 119.99805 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99879 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47437 * 90.00154 * 9 7 5 11 11 H 1.48497 * 109.47108 * 210.00003 * 9 7 5 12 12 H 1.48506 * 109.47469 * 330.00285 * 9 7 5 13 13 N 1.46505 * 109.47039 * 64.99874 * 3 2 1 14 14 C 1.34774 * 120.00295 * 275.00129 * 13 3 2 15 15 O 1.21277 * 120.00016 * 354.81434 * 14 13 3 16 16 C 1.50700 * 119.99997 * 174.81768 * 14 13 3 17 17 H 1.09004 * 109.47053 * 64.44131 * 16 14 13 18 18 C 1.53006 * 109.47234 * 304.44333 * 16 14 13 19 19 S 1.81403 * 109.47063 * 174.19610 * 18 16 14 20 20 C 1.81405 * 101.91820 * 185.17167 * 19 18 16 21 21 O 1.42093 * 108.57657 * 299.65732 * 19 18 16 22 22 O 1.42096 * 108.57641 * 70.68884 * 19 18 16 23 23 C 1.50702 * 109.47128 * 184.44213 * 16 14 13 24 24 C 1.38235 * 120.00114 * 239.99993 * 23 16 14 25 25 C 1.38229 * 120.00281 * 180.02562 * 24 23 16 26 26 C 1.38241 * 119.99494 * 359.95645 * 25 24 23 27 27 C 1.38226 * 120.00200 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99738 * 59.98187 * 23 16 14 29 29 H 1.09004 * 109.47305 * 299.99672 * 1 2 3 30 30 H 1.09000 * 109.47768 * 59.99779 * 1 2 3 31 31 H 1.08998 * 109.46919 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47004 * 240.00654 * 2 1 3 33 33 H 1.08994 * 109.47125 * 120.00307 * 2 1 3 34 34 H 0.96999 * 120.00205 * 179.97438 * 8 7 5 35 35 H 0.97009 * 119.99503 * 94.99714 * 13 3 2 36 36 H 1.09000 * 109.46719 * 294.19922 * 18 16 14 37 37 H 1.09005 * 109.47054 * 54.19940 * 18 16 14 38 38 H 1.08994 * 109.46934 * 60.00337 * 20 19 18 39 39 H 1.08999 * 109.46753 * 180.02562 * 20 19 18 40 40 H 1.09003 * 109.46852 * 300.00053 * 20 19 18 41 41 H 1.08001 * 119.99949 * 359.97438 * 24 23 16 42 42 H 1.07992 * 120.00297 * 179.97438 * 25 24 23 43 43 H 1.08003 * 119.99250 * 179.72573 * 26 25 24 44 44 H 1.08001 * 119.99925 * 179.97438 * 27 26 25 45 45 H 1.08000 * 119.99830 * 359.97438 * 28 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9816 -0.8417 5 6 3.5418 1.4444 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0049 0.8802 -1.3812 10 1 6.5539 -0.3518 -0.7599 11 1 6.3834 0.9216 -2.8165 12 1 6.5575 2.0722 -0.6889 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6643 1.3670 15 8 -0.3034 2.7155 0.4063 16 6 -0.0085 3.2346 2.6896 17 1 0.6322 4.0753 2.9559 18 6 0.0911 2.1553 3.7695 19 16 -0.2774 2.8847 5.3891 20 6 0.0505 1.4957 6.5089 21 8 0.6710 3.9102 5.6500 22 8 -1.6637 3.1917 5.4425 23 6 -1.4358 3.7057 2.5802 24 6 -1.7451 5.0333 2.8096 25 6 -3.0543 5.4653 2.7098 26 6 -4.0543 4.5697 2.3797 27 6 -3.7449 3.2424 2.1489 28 6 -2.4358 2.8101 2.2501 29 1 -0.3634 0.5138 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8291 -0.0602 -2.9503 35 1 2.2719 2.1231 1.9979 36 1 -0.6252 1.3616 3.5570 37 1 1.0996 1.7420 3.7782 38 1 1.0900 1.1842 6.4066 39 1 -0.1368 1.8058 7.5369 40 1 -0.6052 0.6625 6.2558 41 1 -0.9638 5.7329 3.0676 42 1 -3.2959 6.5024 2.8894 43 1 -5.0779 4.9064 2.3060 44 1 -4.5262 2.5427 1.8914 45 1 -2.1940 1.7730 2.0702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597509255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:09 Heat of formation + Delta-G solvation = -108.230404 kcal Electronic energy + Delta-G solvation = -28524.165982 eV Core-core repulsion = 24633.023094 eV Total energy + Delta-G solvation = -3891.142888 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.34589 -39.64446 -37.91315 -36.99289 -36.93161 -35.43325 -34.21492 -32.67275 -31.76613 -30.77206 -30.08835 -28.87320 -26.27967 -24.96290 -23.52210 -22.98489 -21.59801 -20.93236 -19.74773 -18.98395 -18.02147 -17.83605 -17.28684 -17.16839 -16.93949 -16.80227 -16.27297 -15.94737 -15.89777 -15.47469 -14.87802 -14.65534 -14.59555 -14.17422 -13.98913 -13.95854 -13.89177 -13.76337 -13.47092 -13.19612 -13.14512 -12.99717 -12.93963 -12.89245 -12.77986 -12.65216 -12.19218 -12.06710 -12.03267 -11.93651 -11.84824 -11.66961 -11.56034 -11.02413 -10.60746 -10.45830 -9.71768 -9.62789 -9.58930 -8.15172 -6.32053 -0.93011 0.44267 0.60209 1.44560 1.46416 1.55854 1.77508 1.86773 2.34738 2.57093 2.73572 3.03095 3.13912 3.14841 3.44268 3.58603 3.77127 4.08987 4.13179 4.17863 4.19749 4.25781 4.30299 4.39296 4.51391 4.58206 4.63020 4.68789 4.77867 4.84690 4.99963 5.07003 5.13181 5.20354 5.28640 5.45260 5.58362 5.59252 5.63972 5.65894 5.68323 5.82391 5.94866 6.18182 6.19839 6.76561 6.99258 7.35061 7.58442 8.89757 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013271 B = 0.003771 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.296621 B = 7423.757914 C = 8488.349149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.004 1.004 5 C -0.548 4.548 6 H 0.072 0.928 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.966 3.034 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.267 1.267 13 N -0.703 5.703 14 C 0.517 3.483 15 O -0.570 6.570 16 C -0.051 4.051 17 H 0.124 0.876 18 C -0.613 4.613 19 S 2.423 3.577 20 C -0.640 4.640 21 O -0.975 6.975 22 O -0.958 6.958 23 C -0.097 4.097 24 C -0.127 4.127 25 C -0.129 4.129 26 C -0.119 4.119 27 C -0.132 4.132 28 C -0.092 4.092 29 H 0.049 0.951 30 H 0.020 0.980 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.264 0.736 35 H 0.404 0.596 36 H 0.154 0.846 37 H 0.166 0.834 38 H 0.154 0.846 39 H 0.143 0.857 40 H 0.153 0.847 41 H 0.129 0.871 42 H 0.144 0.856 43 H 0.147 0.853 44 H 0.139 0.861 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.064 1.512 18.188 20.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.014 0.986 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.791 3.209 10 H -0.195 1.195 11 H -0.216 1.216 12 H -0.191 1.191 13 N -0.352 5.352 14 C 0.301 3.699 15 O -0.449 6.449 16 C -0.074 4.074 17 H 0.141 0.859 18 C -0.740 4.740 19 S 2.608 3.392 20 C -0.793 4.793 21 O -0.972 6.972 22 O -0.955 6.955 23 C -0.098 4.098 24 C -0.145 4.145 25 C -0.146 4.146 26 C -0.137 4.137 27 C -0.150 4.150 28 C -0.110 4.110 29 H 0.068 0.932 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.239 0.761 36 H 0.172 0.828 37 H 0.184 0.816 38 H 0.173 0.827 39 H 0.161 0.839 40 H 0.171 0.829 41 H 0.147 0.853 42 H 0.162 0.838 43 H 0.164 0.836 44 H 0.157 0.843 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.844 2.306 17.508 20.217 hybrid contribution 1.529 -0.798 -0.719 1.868 sum -8.315 1.508 16.789 18.796 Atomic orbital electron populations 1.21690 0.97031 0.99367 1.00252 1.21765 0.93701 0.98855 1.01559 1.18369 0.93505 0.89278 0.81360 0.98574 1.21597 0.91578 1.38733 1.06669 0.91016 1.25712 1.02972 0.94499 0.95075 1.70043 1.36933 1.38449 1.09839 0.85435 0.79552 0.78862 0.77020 1.19513 1.21586 1.19093 1.46209 1.15244 1.56049 1.17737 1.20407 0.81961 0.77818 0.89665 1.90692 1.54834 1.58613 1.40809 1.19964 0.95758 0.98677 0.92956 0.85856 1.30555 1.15254 1.09734 1.18436 1.07595 0.74629 0.78640 0.78352 1.30140 1.14523 1.18761 1.15841 1.93551 1.64560 1.55063 1.84068 1.93589 1.32615 1.83539 1.85801 1.19415 0.93124 0.94748 1.02469 1.21286 0.98137 0.94744 1.00294 1.21371 0.92501 1.00881 0.99883 1.21475 1.00371 0.93306 0.98538 1.21384 0.96372 0.97014 1.00261 1.20964 0.93238 0.99421 0.97356 0.93171 0.96045 0.93344 0.91260 0.93352 0.92709 0.76109 0.82779 0.81562 0.82734 0.83909 0.82859 0.85295 0.83783 0.83563 0.84343 0.86652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.24 8.58 71.98 0.62 -4.62 16 2 C -0.12 -5.51 5.45 30.59 0.17 -5.35 16 3 C 0.28 13.58 2.25 44.24 0.10 13.68 16 4 H 0.00 -0.22 7.51 -2.39 -0.02 -0.24 16 5 C -0.55 -27.88 8.73 25.60 0.22 -27.66 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 0.92 5.29 84.66 0.45 1.37 16 8 N -0.91 -51.19 11.29 21.45 0.24 -50.95 16 9 Si 0.97 41.13 29.54 68.60 2.03 43.15 16 10 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 11 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 13 N -0.70 -26.77 4.80 -446.10 -2.14 -28.91 16 14 C 0.52 19.17 5.41 87.66 0.47 19.65 16 15 O -0.57 -26.07 12.83 -3.02 -0.04 -26.11 16 16 C -0.05 -1.44 2.37 -12.28 -0.03 -1.47 16 17 H 0.12 3.14 7.80 -2.39 -0.02 3.12 16 18 C -0.61 -11.34 5.08 71.98 0.37 -10.97 16 19 S 2.42 42.70 5.14 -56.49 -0.29 42.41 16 20 C -0.64 -4.75 10.62 113.37 1.20 -3.54 16 21 O -0.98 -23.97 18.00 -127.37 -2.29 -26.26 16 22 O -0.96 -23.62 16.95 -127.37 -2.16 -25.78 16 23 C -0.10 -2.93 2.87 -19.87 -0.06 -2.98 16 24 C -0.13 -3.64 9.66 22.27 0.22 -3.43 16 25 C -0.13 -3.28 10.05 22.27 0.22 -3.06 16 26 C -0.12 -2.91 10.05 22.27 0.22 -2.69 16 27 C -0.13 -3.53 10.05 22.27 0.22 -3.31 16 28 C -0.09 -2.75 7.95 22.27 0.18 -2.58 16 29 H 0.05 1.91 5.75 -2.39 -0.01 1.90 16 30 H 0.02 0.98 7.92 -2.39 -0.02 0.96 16 31 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 3.66 5.95 -2.39 -0.01 3.64 16 33 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 35 H 0.40 12.55 7.79 -92.70 -0.72 11.83 16 36 H 0.15 2.40 7.20 -2.39 -0.02 2.38 16 37 H 0.17 2.10 7.26 -2.39 -0.02 2.09 16 38 H 0.15 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.15 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.13 3.29 7.95 -2.91 -0.02 3.27 16 42 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 43 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 44 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 45 H 0.12 3.37 7.54 -2.91 -0.02 3.35 16 Total: -1.00 -79.08 377.88 0.20 -78.88 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 0.28 Total: 30.54 kcal Atomic # 6 Polarization: -41.54 SS G_CDS: 4.58 Total: -36.96 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -1.90 Total: -79.87 kcal Atomic # 8 Polarization: -73.67 SS G_CDS: -4.49 Total: -78.16 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.15 kcal Atomic # 16 Polarization: 42.70 SS G_CDS: -0.29 Total: 42.41 kcal Total: -79.08 0.20 -78.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597509255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.351 kcal (2) G-P(sol) polarization free energy of solvation -79.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds