Wall clock time and date at job start Tue Mar 31 2020 23:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.45999 * 2 1 4 4 C 1.53039 * 109.45830 * 119.96734 * 2 1 3 5 5 C 1.53198 * 109.31105 * 181.38412 * 4 2 1 6 6 N 1.46925 * 108.77506 * 305.37137 * 5 4 2 7 7 S 1.65599 * 120.62751 * 233.58342 * 6 5 4 8 8 O 1.42097 * 106.40680 * 336.46178 * 7 6 5 9 9 O 1.42098 * 106.40265 * 203.54096 * 7 6 5 10 10 C 1.76207 * 107.21806 * 90.00194 * 7 6 5 11 11 C 1.38656 * 119.87489 * 269.97620 * 10 7 6 12 12 C 1.38611 * 120.50004 * 179.97438 * 11 10 7 13 13 C 1.37641 * 120.25063 * 359.76246 * 12 11 10 14 14 C 1.40697 * 119.73794 * 0.51626 * 13 12 11 15 15 C 1.41401 * 120.24007 * 179.74088 * 14 13 12 16 16 H 1.08001 * 119.99623 * 155.11047 * 15 14 13 17 17 C 1.39945 * 120.00012 * 335.11408 * 15 14 13 18 18 N 1.30824 * 119.99909 * 342.71924 * 17 15 14 19 19 Si 1.86802 * 119.99728 * 162.72067 * 17 15 14 20 20 H 1.48493 * 109.47167 * 87.59171 * 19 17 15 21 21 H 1.48502 * 109.47007 * 327.58466 * 19 17 15 22 22 H 1.48504 * 109.46923 * 207.58958 * 19 17 15 23 23 C 1.37595 * 119.87336 * 90.00119 * 10 7 6 24 24 C 1.46919 * 118.74233 * 53.85712 * 6 5 4 25 25 C 1.53035 * 109.45820 * 240.04212 * 2 1 3 26 26 H 1.09000 * 109.49697 * 298.59231 * 25 2 1 27 27 C 1.52989 * 109.50224 * 58.66340 * 25 2 1 28 28 O 1.42895 * 109.47379 * 184.99973 * 27 25 2 29 29 H 1.09011 * 109.47268 * 300.02724 * 1 2 3 30 30 H 1.09003 * 109.47189 * 60.02589 * 1 2 3 31 31 H 1.08997 * 109.47108 * 180.02562 * 1 2 3 32 32 H 1.09012 * 109.49474 * 61.43894 * 4 2 1 33 33 H 1.08994 * 109.53071 * 301.35737 * 4 2 1 34 34 H 1.09001 * 109.58181 * 185.58437 * 5 4 2 35 35 H 1.08995 * 109.58148 * 65.15861 * 5 4 2 36 36 H 1.08004 * 119.74765 * 0.02562 * 11 10 7 37 37 H 1.07998 * 119.87461 * 180.02562 * 12 11 10 38 38 H 1.07997 * 120.13160 * 180.25192 * 13 12 11 39 39 H 0.96996 * 119.99705 * 180.02562 * 18 17 15 40 40 H 1.08002 * 120.13083 * 359.97438 * 23 10 7 41 41 H 1.09006 * 109.58595 * 65.92576 * 24 6 5 42 42 H 1.08991 * 109.59115 * 186.34856 * 24 6 5 43 43 H 1.09002 * 109.47378 * 304.99952 * 27 25 2 44 44 H 1.08997 * 109.47490 * 64.99439 * 27 25 2 45 45 H 0.96705 * 114.00142 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7208 1.2501 5 6 3.5714 -0.6886 1.2642 6 7 4.0678 -1.2487 -0.0001 7 16 5.1666 -2.4877 -0.0002 8 8 5.8404 -2.4267 1.2494 9 8 5.8400 -2.4268 -1.2500 10 6 4.2534 -3.9947 0.0000 11 6 3.8961 -4.5856 1.2024 12 6 3.1773 -5.7707 1.2176 13 6 2.8060 -6.3717 0.0364 14 6 3.1683 -5.7842 -1.1897 15 6 2.7971 -6.3955 -2.4095 16 1 2.7023 -5.7995 -3.3052 17 6 2.5526 -7.7726 -2.4561 18 7 2.9814 -8.5461 -1.4921 19 14 1.6140 -8.5063 -3.8949 20 1 2.5632 -8.8376 -4.9878 21 1 0.6154 -7.5236 -4.3872 22 1 0.9172 -9.7411 -3.4533 23 6 3.8981 -4.5809 -1.1931 24 6 3.5756 -0.6847 -1.2643 25 6 2.0398 -0.7206 -1.2502 26 1 1.6973 -1.7553 -1.2387 27 6 1.5028 -0.0186 -2.4989 28 8 1.8821 -0.7581 -3.6613 29 1 -0.3634 0.5143 0.8898 30 1 -0.3634 0.5134 -0.8902 31 1 -0.3633 -1.0276 0.0005 32 1 1.6978 -1.7558 1.2382 33 1 1.6572 -0.2214 2.1401 34 1 3.9416 -1.2847 2.0983 35 1 3.9142 0.3408 1.3674 36 1 4.1792 -4.1184 2.1341 37 1 2.9039 -6.2219 2.1599 38 1 2.2425 -7.2929 0.0505 39 1 2.8123 -9.5006 -1.5246 40 1 4.1775 -4.1189 -2.1285 41 1 3.9188 0.3452 -1.3631 42 1 3.9487 -1.2780 -2.0990 43 1 0.4157 0.0394 -2.4440 44 1 1.9177 0.9876 -2.5570 45 1 1.5744 -0.3703 -4.4920 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598626320.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:57 Heat of formation + Delta-G solvation = -119.179327 kcal Electronic energy + Delta-G solvation = -28784.155775 eV Core-core repulsion = 24892.538106 eV Total energy + Delta-G solvation = -3891.617669 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.24296 -37.58219 -36.71648 -36.43202 -35.25519 -33.86818 -33.79608 -31.48716 -30.02550 -29.73443 -27.92468 -25.88577 -25.42906 -22.73318 -22.05019 -21.73193 -20.93019 -19.95699 -18.59870 -17.91888 -17.35474 -16.99307 -15.94476 -15.89195 -15.18247 -14.94641 -14.63677 -14.54622 -14.33491 -14.09762 -13.81905 -13.57725 -13.37738 -13.28475 -12.81917 -12.53803 -12.37026 -12.06003 -11.89011 -11.75152 -11.54039 -11.50093 -11.42537 -11.35672 -11.30247 -11.04118 -11.00729 -10.87390 -10.82681 -10.57625 -10.37255 -10.27400 -9.95849 -9.72096 -9.53827 -9.30528 -8.72133 -7.97595 -7.64675 -6.87739 -4.48438 1.02578 2.25429 2.67971 3.02192 3.04680 3.11386 3.49984 3.86531 4.14190 4.31351 4.46351 4.65203 4.70784 4.81527 4.88868 5.07913 5.17854 5.27211 5.39293 5.41360 5.45445 5.49040 5.58370 5.60178 5.71661 5.80247 5.83540 5.91451 6.02678 6.08110 6.14664 6.19232 6.21929 6.38565 6.47938 6.70977 6.74116 6.81572 6.98565 7.09641 7.27134 7.43924 7.64341 7.76913 7.86000 7.99259 8.45283 8.71870 8.77010 10.07962 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010819 B = 0.004613 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.329574 B = 6068.465735 C = 7167.597760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.080 4.080 3 H 0.070 0.930 4 C -0.131 4.131 5 C 0.123 3.877 6 N -1.000 6.000 7 S 2.685 3.315 8 O -0.975 6.975 9 O -0.968 6.968 10 C -0.630 4.630 11 C -0.148 4.148 12 C -0.121 4.121 13 C -0.119 4.119 14 C 0.092 3.908 15 C -0.459 4.459 16 H 0.082 0.918 17 C 0.075 3.925 18 N -0.796 5.796 19 Si 0.911 3.089 20 H -0.268 1.268 21 H -0.260 1.260 22 H -0.276 1.276 23 C -0.121 4.121 24 C 0.134 3.866 25 C -0.101 4.101 26 H 0.091 0.909 27 C 0.080 3.920 28 O -0.566 6.566 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.283 0.717 40 H 0.111 0.889 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.050 0.950 44 H 0.043 0.957 45 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.562 15.337 1.549 16.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.099 4.099 3 H 0.089 0.911 4 C -0.169 4.169 5 C -0.002 4.002 6 N -0.837 5.837 7 S 2.783 3.217 8 O -0.965 6.965 9 O -0.959 6.959 10 C -0.722 4.722 11 C -0.169 4.169 12 C -0.141 4.141 13 C -0.139 4.139 14 C 0.089 3.911 15 C -0.488 4.488 16 H 0.101 0.899 17 C -0.143 4.143 18 N -0.421 5.421 19 Si 0.735 3.265 20 H -0.193 1.193 21 H -0.184 1.184 22 H -0.201 1.201 23 C -0.142 4.142 24 C 0.008 3.992 25 C -0.121 4.121 26 H 0.110 0.890 27 C 0.002 3.998 28 O -0.371 6.371 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.142 0.858 39 H 0.094 0.906 40 H 0.129 0.871 41 H 0.083 0.917 42 H 0.117 0.883 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -5.316 14.837 2.079 15.897 hybrid contribution -1.336 -0.638 -0.977 1.774 sum -6.652 14.199 1.102 15.719 Atomic orbital electron populations 1.21934 0.95154 1.02351 1.01417 1.21003 0.95480 0.99184 0.94202 0.91115 1.21989 0.95499 1.02087 0.97369 1.21365 0.94105 0.99468 0.85300 1.57834 1.63161 1.51187 1.11480 1.01853 0.73590 0.73369 0.72937 1.93493 1.71521 1.87091 1.44401 1.93522 1.71384 1.86897 1.44072 1.29803 1.21160 1.21070 1.00200 1.20043 1.04305 0.98297 0.94258 1.20789 1.00114 0.95832 0.97319 1.21625 1.00336 1.00441 0.91489 1.17672 0.89134 0.90761 0.93540 1.19600 1.40623 0.92727 0.95879 0.89943 1.25931 0.93568 0.97355 0.97448 1.69783 1.34024 1.06277 1.31990 0.86273 0.80359 0.78747 0.81156 1.19268 1.18352 1.20083 1.20754 1.00098 0.99101 0.94254 1.21440 0.93055 0.99443 0.85229 1.21657 0.95960 1.01804 0.92685 0.89037 1.22260 0.98139 0.93846 0.85586 1.86591 1.80289 1.53997 1.16238 0.92660 0.92605 0.92217 0.90616 0.90819 0.89124 0.91482 0.87814 0.88511 0.85823 0.90623 0.87124 0.91699 0.88295 0.93141 0.93865 0.77727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.82 37.16 0.33 -1.02 16 2 C -0.08 -0.81 2.22 -90.58 -0.20 -1.01 16 3 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 4 C -0.13 -1.43 5.36 -26.61 -0.14 -1.57 16 5 C 0.12 1.55 6.38 -3.71 -0.02 1.52 16 6 N -1.00 -15.51 3.28 -113.27 -0.37 -15.89 16 7 S 2.69 53.31 5.69 -107.50 -0.61 52.70 16 8 O -0.97 -20.54 15.98 -57.17 -0.91 -21.45 16 9 O -0.97 -21.51 15.97 -57.17 -0.91 -22.42 16 10 C -0.63 -14.21 5.97 -39.66 -0.24 -14.45 16 11 C -0.15 -3.27 9.53 -39.29 -0.37 -3.65 16 12 C -0.12 -2.76 10.02 -39.66 -0.40 -3.16 16 13 C -0.12 -3.01 8.69 -38.87 -0.34 -3.35 16 14 C 0.09 2.43 5.57 -106.82 -0.60 1.84 16 15 C -0.46 -12.01 9.06 -37.74 -0.34 -12.35 16 16 H 0.08 2.08 7.90 -52.49 -0.41 1.67 16 17 C 0.07 1.85 5.15 -17.34 -0.09 1.76 16 18 N -0.80 -20.19 10.95 55.55 0.61 -19.58 16 19 Si 0.91 18.37 29.59 -169.99 -5.03 13.34 16 20 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 22 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 23 C -0.12 -2.99 9.26 -38.87 -0.36 -3.35 16 24 C 0.13 1.90 5.53 -3.49 -0.02 1.88 16 25 C -0.10 -1.26 2.13 -90.28 -0.19 -1.46 16 26 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 27 C 0.08 0.83 6.18 37.15 0.23 1.06 16 28 O -0.57 -6.91 13.32 -35.23 -0.47 -7.38 16 29 H 0.05 0.43 8.14 -51.92 -0.42 0.00 16 30 H 0.05 0.44 6.29 -51.93 -0.33 0.11 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.97 8.14 -51.92 -0.42 0.54 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 1.18 7.13 -51.93 -0.37 0.81 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 2.07 7.60 -52.48 -0.40 1.67 16 37 H 0.10 1.93 8.06 -52.49 -0.42 1.50 16 38 H 0.12 3.17 6.17 -52.49 -0.32 2.85 16 39 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 40 H 0.11 2.68 7.60 -52.49 -0.40 2.28 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.10 1.63 6.97 -51.93 -0.36 1.26 16 43 H 0.05 0.45 6.14 -51.93 -0.32 0.14 16 44 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.38 2.73 9.12 45.56 0.42 3.14 16 LS Contribution 370.53 15.07 5.58 5.58 Total: -1.00 -32.08 370.53 -10.73 -42.81 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -5.86 Total: 9.58 kcal Atomic # 6 Polarization: -34.54 SS G_CDS: -2.75 Total: -37.30 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.24 Total: -35.47 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: -2.30 Total: -51.25 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.34 kcal Atomic # 16 Polarization: 53.31 SS G_CDS: -0.61 Total: 52.70 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.08 -10.73 -42.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598626320.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.370 kcal (2) G-P(sol) polarization free energy of solvation -32.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds