Wall clock time and date at job start Tue Mar 31 2020 23:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.45999 * 2 1 4 4 C 1.53039 * 109.45830 * 119.96734 * 2 1 3 5 5 C 1.53198 * 109.31105 * 181.38412 * 4 2 1 6 6 N 1.46925 * 108.77506 * 305.37137 * 5 4 2 7 7 S 1.65599 * 120.62751 * 233.58342 * 6 5 4 8 8 O 1.42097 * 106.40680 * 336.46178 * 7 6 5 9 9 O 1.42098 * 106.40265 * 203.54096 * 7 6 5 10 10 C 1.76207 * 107.21806 * 90.00194 * 7 6 5 11 11 C 1.38656 * 119.87489 * 269.97620 * 10 7 6 12 12 C 1.38611 * 120.50004 * 179.97438 * 11 10 7 13 13 C 1.37641 * 120.25063 * 359.76246 * 12 11 10 14 14 C 1.40697 * 119.73794 * 0.51626 * 13 12 11 15 15 C 1.41401 * 120.24007 * 179.74088 * 14 13 12 16 16 H 1.08001 * 119.99623 * 155.11047 * 15 14 13 17 17 C 1.39945 * 120.00012 * 335.11408 * 15 14 13 18 18 N 1.30824 * 119.99909 * 342.71924 * 17 15 14 19 19 Si 1.86802 * 119.99728 * 162.72067 * 17 15 14 20 20 H 1.48493 * 109.47167 * 87.59171 * 19 17 15 21 21 H 1.48502 * 109.47007 * 327.58466 * 19 17 15 22 22 H 1.48504 * 109.46923 * 207.58958 * 19 17 15 23 23 C 1.37595 * 119.87336 * 90.00119 * 10 7 6 24 24 C 1.46919 * 118.74233 * 53.85712 * 6 5 4 25 25 C 1.53035 * 109.45820 * 240.04212 * 2 1 3 26 26 H 1.09000 * 109.49697 * 298.59231 * 25 2 1 27 27 C 1.52989 * 109.50224 * 58.66340 * 25 2 1 28 28 O 1.42895 * 109.47379 * 184.99973 * 27 25 2 29 29 H 1.09011 * 109.47268 * 300.02724 * 1 2 3 30 30 H 1.09003 * 109.47189 * 60.02589 * 1 2 3 31 31 H 1.08997 * 109.47108 * 180.02562 * 1 2 3 32 32 H 1.09012 * 109.49474 * 61.43894 * 4 2 1 33 33 H 1.08994 * 109.53071 * 301.35737 * 4 2 1 34 34 H 1.09001 * 109.58181 * 185.58437 * 5 4 2 35 35 H 1.08995 * 109.58148 * 65.15861 * 5 4 2 36 36 H 1.08004 * 119.74765 * 0.02562 * 11 10 7 37 37 H 1.07998 * 119.87461 * 180.02562 * 12 11 10 38 38 H 1.07997 * 120.13160 * 180.25192 * 13 12 11 39 39 H 0.96996 * 119.99705 * 180.02562 * 18 17 15 40 40 H 1.08002 * 120.13083 * 359.97438 * 23 10 7 41 41 H 1.09006 * 109.58595 * 65.92576 * 24 6 5 42 42 H 1.08991 * 109.59115 * 186.34856 * 24 6 5 43 43 H 1.09002 * 109.47378 * 304.99952 * 27 25 2 44 44 H 1.08997 * 109.47490 * 64.99439 * 27 25 2 45 45 H 0.96705 * 114.00142 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7208 1.2501 5 6 3.5714 -0.6886 1.2642 6 7 4.0678 -1.2487 -0.0001 7 16 5.1666 -2.4877 -0.0002 8 8 5.8404 -2.4267 1.2494 9 8 5.8400 -2.4268 -1.2500 10 6 4.2534 -3.9947 0.0000 11 6 3.8961 -4.5856 1.2024 12 6 3.1773 -5.7707 1.2176 13 6 2.8060 -6.3717 0.0364 14 6 3.1683 -5.7842 -1.1897 15 6 2.7971 -6.3955 -2.4095 16 1 2.7023 -5.7995 -3.3052 17 6 2.5526 -7.7726 -2.4561 18 7 2.9814 -8.5461 -1.4921 19 14 1.6140 -8.5063 -3.8949 20 1 2.5632 -8.8376 -4.9878 21 1 0.6154 -7.5236 -4.3872 22 1 0.9172 -9.7411 -3.4533 23 6 3.8981 -4.5809 -1.1931 24 6 3.5756 -0.6847 -1.2643 25 6 2.0398 -0.7206 -1.2502 26 1 1.6973 -1.7553 -1.2387 27 6 1.5028 -0.0186 -2.4989 28 8 1.8821 -0.7581 -3.6613 29 1 -0.3634 0.5143 0.8898 30 1 -0.3634 0.5134 -0.8902 31 1 -0.3633 -1.0276 0.0005 32 1 1.6978 -1.7558 1.2382 33 1 1.6572 -0.2214 2.1401 34 1 3.9416 -1.2847 2.0983 35 1 3.9142 0.3408 1.3674 36 1 4.1792 -4.1184 2.1341 37 1 2.9039 -6.2219 2.1599 38 1 2.2425 -7.2929 0.0505 39 1 2.8123 -9.5006 -1.5246 40 1 4.1775 -4.1189 -2.1285 41 1 3.9188 0.3452 -1.3631 42 1 3.9487 -1.2780 -2.0990 43 1 0.4157 0.0394 -2.4440 44 1 1.9177 0.9876 -2.5570 45 1 1.5744 -0.3703 -4.4920 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598626320.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:56 Heat of formation + Delta-G solvation = -142.016324 kcal Electronic energy + Delta-G solvation = -28785.146062 eV Core-core repulsion = 24892.538106 eV Total energy + Delta-G solvation = -3892.607956 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.21046 -39.45860 -38.37183 -37.38393 -36.94953 -35.68652 -34.88099 -32.46856 -31.93141 -31.60228 -28.82027 -27.37234 -26.83252 -23.90008 -23.44195 -22.98488 -22.78063 -20.96301 -20.16368 -19.53046 -18.52297 -18.22035 -17.76487 -17.25525 -16.86720 -16.54767 -16.09709 -15.52483 -15.40308 -15.25368 -15.14417 -14.98069 -14.74774 -14.61125 -14.33229 -13.87186 -13.74648 -13.32290 -13.27439 -13.14542 -13.12052 -13.07575 -13.01462 -12.87818 -12.62210 -12.60570 -12.48731 -12.21932 -12.02088 -11.84290 -11.58465 -11.39508 -11.26563 -11.16473 -11.13544 -10.74742 -9.96986 -9.81312 -9.57433 -8.74597 -6.47219 -0.55546 0.39313 0.82530 1.34762 1.42677 1.50402 2.02750 2.16611 2.54100 2.74812 3.32613 3.36034 3.49296 3.74292 3.85252 3.89000 4.07150 4.27388 4.30524 4.36761 4.40574 4.53339 4.55509 4.63860 4.73539 4.76218 4.77969 4.82291 4.87807 4.90703 4.98916 5.03723 5.04260 5.16802 5.20965 5.22130 5.29933 5.39122 5.45999 5.54570 5.60545 5.69816 5.85919 5.91806 6.09005 6.50384 6.77622 6.82938 7.02028 8.23770 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010819 B = 0.004613 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.329574 B = 6068.465735 C = 7167.597760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.075 4.075 3 H 0.099 0.901 4 C -0.129 4.129 5 C 0.112 3.888 6 N -0.991 5.991 7 S 2.707 3.293 8 O -0.983 6.983 9 O -0.996 6.996 10 C -0.638 4.638 11 C -0.147 4.147 12 C -0.122 4.122 13 C -0.140 4.140 14 C 0.064 3.936 15 C -0.498 4.498 16 H 0.076 0.924 17 C 0.036 3.964 18 N -0.825 5.825 19 Si 0.984 3.016 20 H -0.262 1.262 21 H -0.258 1.258 22 H -0.261 1.261 23 C -0.143 4.143 24 C 0.128 3.872 25 C -0.101 4.101 26 H 0.049 0.951 27 C 0.080 3.920 28 O -0.599 6.599 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.037 0.963 32 H 0.048 0.952 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.114 0.886 39 H 0.292 0.708 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.726 17.684 2.352 19.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.093 4.093 3 H 0.117 0.883 4 C -0.168 4.168 5 C -0.012 4.012 6 N -0.831 5.831 7 S 2.801 3.199 8 O -0.974 6.974 9 O -0.986 6.986 10 C -0.727 4.727 11 C -0.168 4.168 12 C -0.141 4.141 13 C -0.160 4.160 14 C 0.061 3.939 15 C -0.527 4.527 16 H 0.094 0.906 17 C -0.179 4.179 18 N -0.451 5.451 19 Si 0.804 3.196 20 H -0.187 1.187 21 H -0.182 1.182 22 H -0.185 1.185 23 C -0.164 4.164 24 C 0.003 3.997 25 C -0.122 4.122 26 H 0.067 0.933 27 C 0.002 3.998 28 O -0.408 6.408 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.124 0.876 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -6.492 17.159 2.891 18.572 hybrid contribution -0.935 -1.242 -1.143 1.930 sum -7.427 15.917 1.748 17.651 Atomic orbital electron populations 1.21911 0.94153 1.01475 1.03011 1.21021 0.96257 0.99932 0.92103 0.88280 1.22012 0.94312 1.01134 0.99346 1.21769 0.95240 1.00915 0.83319 1.57563 1.62766 1.49278 1.13445 1.01169 0.73651 0.73023 0.72026 1.93471 1.72123 1.87199 1.44562 1.93481 1.72559 1.87172 1.45379 1.30342 1.20133 1.22682 0.99543 1.20430 1.03274 0.97911 0.95156 1.21138 0.99292 0.95849 0.97780 1.21632 1.01532 1.00685 0.92181 1.18031 0.89843 0.91682 0.94363 1.19829 1.42927 0.94022 0.95884 0.90586 1.26780 0.93704 0.97010 1.00378 1.69819 1.34526 1.06977 1.33730 0.85181 0.78838 0.78122 0.77447 1.18699 1.18182 1.18516 1.20743 1.01316 0.99403 0.94924 1.21633 0.94368 1.00243 0.83472 1.21663 0.94661 1.00293 0.95563 0.93258 1.22357 0.99125 0.94379 0.83967 1.86552 1.80911 1.55455 1.17867 0.90828 0.91264 0.94348 0.93352 0.87640 0.89645 0.88013 0.85115 0.85402 0.86802 0.89698 0.88151 0.88374 0.91407 0.91576 0.91022 0.75515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.82 71.98 0.63 -1.61 16 2 C -0.07 -1.29 2.22 -10.77 -0.02 -1.32 16 3 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 4 C -0.13 -2.52 5.36 30.67 0.16 -2.35 16 5 C 0.11 2.52 6.38 86.36 0.55 3.07 16 6 N -0.99 -29.86 3.28 -512.29 -1.68 -31.54 16 7 S 2.71 108.37 5.69 -56.49 -0.32 108.05 16 8 O -0.98 -40.61 15.98 -128.00 -2.05 -42.66 16 9 O -1.00 -45.51 15.97 -128.00 -2.04 -47.56 16 10 C -0.64 -29.68 5.97 22.22 0.13 -29.55 16 11 C -0.15 -6.53 9.53 22.46 0.21 -6.32 16 12 C -0.12 -5.60 10.02 22.22 0.22 -5.38 16 13 C -0.14 -7.40 8.69 22.73 0.20 -7.20 16 14 C 0.06 3.57 5.57 -21.29 -0.12 3.45 16 15 C -0.50 -27.55 9.06 23.46 0.21 -27.34 16 16 H 0.08 4.12 7.90 -2.91 -0.02 4.10 16 17 C 0.04 1.85 5.15 85.26 0.44 2.29 16 18 N -0.82 -43.10 10.95 21.83 0.24 -42.86 16 19 Si 0.98 38.38 29.59 68.60 2.03 40.41 16 20 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 21 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 22 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 23 C -0.14 -7.51 9.26 22.73 0.21 -7.30 16 24 C 0.13 3.53 5.53 86.51 0.48 4.01 16 25 C -0.10 -2.46 2.13 -10.57 -0.02 -2.48 16 26 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 27 C 0.08 1.51 6.18 71.98 0.45 1.95 16 28 O -0.60 -14.57 13.32 -148.98 -1.98 -16.55 16 29 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.07 0.86 6.29 -2.39 -0.02 0.85 16 31 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.09 2.04 7.13 -2.39 -0.02 2.02 16 35 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.13 5.04 7.60 -2.91 -0.02 5.02 16 37 H 0.13 4.97 8.06 -2.91 -0.02 4.95 16 38 H 0.11 6.12 6.17 -2.91 -0.02 6.10 16 39 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 40 H 0.10 5.30 7.60 -2.91 -0.02 5.28 16 41 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 42 H 0.07 2.32 6.97 -2.39 -0.02 2.30 16 43 H 0.07 1.04 6.14 -2.39 -0.01 1.03 16 44 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.40 5.49 9.12 -74.05 -0.68 4.81 16 Total: -1.00 -73.27 370.53 -1.74 -75.02 By element: Atomic # 1 Polarization: 33.43 SS G_CDS: 0.33 Total: 33.76 kcal Atomic # 6 Polarization: -79.80 SS G_CDS: 3.74 Total: -76.06 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -1.44 Total: -74.41 kcal Atomic # 8 Polarization: -100.69 SS G_CDS: -6.07 Total: -106.76 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Atomic # 16 Polarization: 108.37 SS G_CDS: -0.32 Total: 108.05 kcal Total: -73.27 -1.74 -75.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598626320.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.001 kcal (2) G-P(sol) polarization free energy of solvation -73.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds