Wall clock time and date at job start Tue Mar 31 2020 23:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46244 * 2 1 4 4 C 1.53034 * 109.46105 * 240.02553 * 2 1 3 5 5 C 1.53191 * 109.31670 * 178.62628 * 4 2 1 6 6 N 1.46927 * 108.77189 * 54.63694 * 5 4 2 7 7 S 1.65606 * 120.63224 * 126.37176 * 6 5 4 8 8 O 1.42097 * 106.39996 * 336.45663 * 7 6 5 9 9 O 1.42095 * 106.39952 * 203.53822 * 7 6 5 10 10 C 1.76199 * 107.21900 * 89.99754 * 7 6 5 11 11 C 1.38658 * 119.87671 * 89.99870 * 10 7 6 12 12 C 1.38602 * 120.50273 * 180.02562 * 11 10 7 13 13 C 1.37640 * 120.24802 * 359.95557 * 12 11 10 14 14 C 1.40693 * 119.74757 * 0.02562 * 13 12 11 15 15 C 1.41395 * 120.24974 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00332 * 206.62190 * 15 14 13 17 17 C 1.39947 * 119.99626 * 26.62371 * 15 14 13 18 18 N 1.30829 * 120.00084 * 25.18239 * 17 15 14 19 19 Si 1.86799 * 119.99929 * 205.18009 * 17 15 14 20 20 H 1.48509 * 109.46798 * 179.97438 * 19 17 15 21 21 H 1.48498 * 109.47046 * 299.99736 * 19 17 15 22 22 H 1.48500 * 109.47101 * 60.00014 * 19 17 15 23 23 C 1.37596 * 119.87555 * 270.26198 * 10 7 6 24 24 C 1.46925 * 118.73940 * 306.64271 * 6 5 4 25 25 C 1.52764 * 109.00939 * 53.31031 * 24 6 5 26 26 H 1.09000 * 109.36034 * 65.49931 * 25 24 6 27 27 C 1.53001 * 109.59279 * 185.53781 * 25 24 6 28 28 O 1.42897 * 109.47037 * 294.97911 * 27 25 24 29 29 H 1.09000 * 109.47263 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47425 * 299.97454 * 1 2 3 31 31 H 1.08997 * 109.47149 * 59.97111 * 1 2 3 32 32 H 1.09002 * 109.49869 * 58.67727 * 4 2 1 33 33 H 1.08996 * 109.52469 * 298.59718 * 4 2 1 34 34 H 1.08999 * 109.58784 * 294.85104 * 5 4 2 35 35 H 1.08993 * 109.70790 * 174.48925 * 5 4 2 36 36 H 1.08005 * 119.74524 * 0.02562 * 11 10 7 37 37 H 1.08000 * 119.87963 * 179.97438 * 12 11 10 38 38 H 1.08006 * 120.12840 * 180.02562 * 13 12 11 39 39 H 0.97003 * 119.99752 * 5.83291 * 18 17 15 40 40 H 1.08001 * 120.12717 * 359.97438 * 23 10 7 41 41 H 1.09002 * 109.59076 * 173.14345 * 24 6 5 42 42 H 1.09002 * 109.58868 * 293.57049 * 24 6 5 43 43 H 1.08996 * 109.47334 * 54.98456 * 27 25 24 44 44 H 1.09001 * 109.46748 * 174.97915 * 27 25 24 45 45 H 0.96703 * 114.00046 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2499 5 6 3.5713 -0.6890 -1.2640 6 7 4.0676 -1.2493 0.0003 7 16 5.1653 -2.4893 0.0006 8 8 5.0235 -3.1509 -1.2490 9 8 5.0236 -3.1503 1.2504 10 6 6.7712 -1.7643 0.0003 11 6 7.4007 -1.4798 1.2026 12 6 8.6637 -0.9090 1.2175 13 6 9.3075 -0.6190 0.0361 14 6 8.6786 -0.9036 -1.1898 15 6 9.3301 -0.6096 -2.4098 16 1 8.7490 -0.4126 -3.2985 17 6 10.7280 -0.5739 -2.4656 18 7 11.4348 -1.2578 -1.6029 19 14 11.5847 0.4503 -3.7720 20 1 13.0559 0.3202 -3.6168 21 1 11.1841 -0.0299 -5.1189 22 1 11.1953 1.8750 -3.6182 23 6 7.3936 -1.4775 -1.1928 24 6 3.5668 -0.6927 1.2645 25 6 2.0395 -0.7208 1.2502 26 1 1.6972 -1.7555 1.2385 27 6 1.5018 -0.0192 2.4990 28 8 1.8809 -0.7589 3.6614 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5134 0.8902 31 1 -0.3633 0.5143 -0.8897 32 1 1.6574 -0.2208 -2.1398 33 1 1.6976 -1.7557 -1.2387 34 1 3.9145 0.3404 -1.3671 35 1 3.9437 -1.2836 -2.0982 36 1 6.9031 -1.7047 2.1344 37 1 9.1445 -0.6912 2.1597 38 1 10.2918 -0.1746 0.0500 39 1 10.9931 -1.8552 -0.9792 40 1 6.8998 -1.6964 -2.1281 41 1 3.9341 -1.2911 2.0983 42 1 3.9096 0.3365 1.3718 43 1 1.9165 0.9871 2.5574 44 1 0.4147 0.0386 2.4436 45 1 1.5727 -0.3713 4.4921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598626322.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:05 Heat of formation + Delta-G solvation = -125.423670 kcal Electronic energy + Delta-G solvation = -28185.285547 eV Core-core repulsion = 24293.397103 eV Total energy + Delta-G solvation = -3891.888444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -39.39787 -37.85316 -36.81178 -36.58003 -35.33238 -34.06240 -33.97354 -31.63287 -30.07590 -29.66971 -28.05556 -26.01106 -25.28469 -22.80517 -22.17895 -21.83139 -21.19875 -20.13940 -18.84153 -18.10519 -17.54507 -17.17411 -16.26236 -15.97786 -15.03442 -14.97546 -14.70999 -14.51342 -14.28592 -14.20800 -14.01876 -13.76411 -13.65445 -13.41429 -12.95153 -12.62202 -12.51674 -12.22693 -12.13217 -11.84482 -11.62821 -11.59934 -11.55312 -11.49136 -11.33709 -11.12565 -11.05454 -10.97437 -10.68953 -10.47593 -10.47093 -10.40726 -10.07314 -9.79216 -9.67538 -9.15341 -8.80447 -8.22643 -7.86709 -7.33045 -4.61056 0.92135 2.05006 2.58733 3.09170 3.14993 3.29411 3.41161 3.93023 3.96965 4.21793 4.37202 4.52855 4.55871 4.69683 4.77658 4.96499 5.08287 5.14238 5.23760 5.25590 5.30791 5.39998 5.46274 5.49049 5.58711 5.69491 5.79070 5.81622 5.90943 5.93195 6.00396 6.02349 6.11116 6.28835 6.31096 6.45934 6.55455 6.64806 6.87327 7.04869 7.26577 7.45906 7.48519 7.55449 7.63900 7.91181 8.02373 8.51904 8.68742 9.92066 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017470 B = 0.003243 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.320499 B = 8631.895689 C = 9136.581662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.085 4.085 3 H 0.075 0.925 4 C -0.124 4.124 5 C 0.117 3.883 6 N -0.999 5.999 7 S 2.686 3.314 8 O -0.969 6.969 9 O -0.968 6.968 10 C -0.621 4.621 11 C -0.162 4.162 12 C -0.100 4.100 13 C -0.176 4.176 14 C 0.079 3.921 15 C -0.521 4.521 16 H 0.080 0.920 17 C 0.038 3.962 18 N -0.794 5.794 19 Si 1.067 2.933 20 H -0.273 1.273 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.124 4.124 24 C 0.129 3.871 25 C -0.095 4.095 26 H 0.083 0.917 27 C 0.079 3.921 28 O -0.569 6.569 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.299 0.701 40 H 0.112 0.888 41 H 0.100 0.900 42 H 0.065 0.935 43 H 0.047 0.953 44 H 0.052 0.948 45 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.611 6.287 4.038 19.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.103 4.103 3 H 0.093 0.907 4 C -0.164 4.164 5 C -0.009 4.009 6 N -0.836 5.836 7 S 2.783 3.217 8 O -0.959 6.959 9 O -0.959 6.959 10 C -0.713 4.713 11 C -0.183 4.183 12 C -0.119 4.119 13 C -0.196 4.196 14 C 0.075 3.925 15 C -0.549 4.549 16 H 0.098 0.902 17 C -0.184 4.184 18 N -0.417 5.417 19 Si 0.890 3.110 20 H -0.198 1.198 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.146 4.146 24 C 0.004 3.996 25 C -0.116 4.116 26 H 0.101 0.899 27 C 0.001 3.999 28 O -0.374 6.374 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.126 0.874 37 H 0.118 0.882 38 H 0.129 0.871 39 H 0.112 0.888 40 H 0.130 0.870 41 H 0.118 0.882 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -16.016 5.442 3.070 17.191 hybrid contribution -1.200 0.472 1.040 1.657 sum -17.216 5.914 4.110 18.662 Atomic orbital electron populations 1.21929 0.95100 1.02070 1.01677 1.21065 0.95465 0.99690 0.94100 0.90661 1.21920 0.95459 1.01441 0.97533 1.21439 0.94104 0.99906 0.85412 1.57764 1.58560 1.55795 1.11494 1.01837 0.73713 0.73093 0.73030 1.93514 1.86628 1.71555 1.44237 1.93512 1.86600 1.71612 1.44149 1.29947 1.21683 1.19470 1.00157 1.20030 0.97077 1.06724 0.94499 1.20731 0.94841 0.99274 0.97059 1.21428 1.01182 1.04709 0.92279 1.17737 0.91791 0.89673 0.93308 1.20583 0.94208 1.43613 0.96454 0.90176 1.27090 0.95055 0.96078 1.00169 1.70479 1.41414 1.15445 1.14355 0.83610 0.76483 0.76252 0.74664 1.19760 1.19941 1.19922 1.20741 0.98076 1.01429 0.94317 1.21291 0.93086 0.99833 0.85400 1.21438 0.96069 1.01127 0.92936 0.89868 1.22280 0.98115 0.94155 0.85338 1.86556 1.80445 1.54057 1.16369 0.92501 0.92517 0.92453 0.90487 0.91272 0.91291 0.88676 0.87429 0.88191 0.87094 0.88787 0.87018 0.88156 0.91674 0.93480 0.93039 0.77595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.82 37.16 0.33 -0.77 16 2 C -0.08 -0.78 2.23 -90.58 -0.20 -0.98 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.12 -1.28 5.36 -26.62 -0.14 -1.42 16 5 C 0.12 1.53 6.48 -3.71 -0.02 1.50 16 6 N -1.00 -15.46 3.30 -113.77 -0.37 -15.84 16 7 S 2.69 52.92 5.72 -107.50 -0.62 52.31 16 8 O -0.97 -20.89 15.86 -57.17 -0.91 -21.80 16 9 O -0.97 -20.75 15.85 -57.17 -0.91 -21.66 16 10 C -0.62 -13.92 5.96 -39.66 -0.24 -14.16 16 11 C -0.16 -3.60 9.53 -39.29 -0.37 -3.98 16 12 C -0.10 -2.25 10.02 -39.67 -0.40 -2.65 16 13 C -0.18 -4.38 7.96 -38.87 -0.31 -4.69 16 14 C 0.08 2.04 5.27 -106.83 -0.56 1.48 16 15 C -0.52 -13.48 8.98 -37.74 -0.34 -13.82 16 16 H 0.08 2.00 7.96 -52.49 -0.42 1.58 16 17 C 0.04 0.94 4.93 -17.34 -0.09 0.86 16 18 N -0.79 -20.72 12.35 55.55 0.69 -20.04 16 19 Si 1.07 20.92 30.00 -169.99 -5.10 15.82 16 20 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 21 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 22 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 23 C -0.12 -3.03 9.26 -38.87 -0.36 -3.39 16 24 C 0.13 1.77 5.57 -3.93 -0.02 1.75 16 25 C -0.10 -1.06 2.11 -90.72 -0.19 -1.25 16 26 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 27 C 0.08 0.71 6.19 37.16 0.23 0.94 16 28 O -0.57 -5.84 13.30 -35.23 -0.47 -6.31 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.36 6.29 -51.93 -0.33 0.03 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.32 6.92 -51.93 -0.36 0.97 16 36 H 0.11 2.18 7.60 -52.48 -0.40 1.78 16 37 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 38 H 0.11 2.79 6.58 -52.48 -0.35 2.45 16 39 H 0.30 8.03 6.73 -40.82 -0.27 7.75 16 40 H 0.11 2.61 7.61 -52.49 -0.40 2.21 16 41 H 0.10 1.55 6.75 -51.93 -0.35 1.20 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.05 0.37 6.14 -51.93 -0.32 0.05 16 45 H 0.38 2.02 9.12 45.56 0.42 2.44 16 LS Contribution 369.39 15.07 5.57 5.57 Total: -1.00 -32.24 369.39 -10.61 -42.85 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -5.80 Total: 9.69 kcal Atomic # 6 Polarization: -37.90 SS G_CDS: -2.69 Total: -40.59 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.31 Total: -35.88 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -2.28 Total: -49.76 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.10 Total: 15.82 kcal Atomic # 16 Polarization: 52.92 SS G_CDS: -0.62 Total: 52.31 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.24 -10.61 -42.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598626322.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.577 kcal (2) G-P(sol) polarization free energy of solvation -32.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds