Wall clock time and date at job start Tue Mar 31 2020 23:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.45700 * 2 1 4 4 C 1.53034 * 109.46294 * 240.04158 * 2 1 3 5 5 C 1.52765 * 109.38339 * 301.21519 * 4 2 1 6 6 N 1.46918 * 109.00943 * 305.59301 * 5 4 2 7 7 S 1.65607 * 120.62918 * 233.58409 * 6 5 4 8 8 O 1.42099 * 106.40406 * 156.17990 * 7 6 5 9 9 O 1.42098 * 106.40349 * 23.25461 * 7 6 5 10 10 C 1.76203 * 107.21606 * 269.71516 * 7 6 5 11 11 C 1.38657 * 119.87175 * 90.00117 * 10 7 6 12 12 C 1.38615 * 120.50192 * 180.02562 * 11 10 7 13 13 C 1.37645 * 120.24470 * 359.97438 * 12 11 10 14 14 C 1.40696 * 119.74535 * 0.02562 * 13 12 11 15 15 C 1.41390 * 120.24454 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00456 * 155.58235 * 15 14 13 17 17 C 1.39946 * 119.99883 * 335.30726 * 15 14 13 18 18 N 1.30832 * 119.99916 * 342.55890 * 17 15 14 19 19 Si 1.86807 * 120.00040 * 162.55733 * 17 15 14 20 20 H 1.48497 * 109.47096 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46735 * 120.00046 * 19 17 15 22 22 H 1.48498 * 109.47037 * 239.99864 * 19 17 15 23 23 C 1.37590 * 119.87940 * 270.26015 * 10 7 6 24 24 C 1.46924 * 118.74311 * 53.30295 * 6 5 4 25 25 C 1.53040 * 109.45967 * 119.96779 * 2 1 3 26 26 H 1.09004 * 109.49604 * 178.60709 * 25 2 1 27 27 C 1.53000 * 109.50108 * 298.70852 * 25 2 1 28 28 O 1.42896 * 109.47205 * 184.83591 * 27 25 2 29 29 H 1.08996 * 109.47654 * 300.02779 * 1 2 3 30 30 H 1.09006 * 109.46875 * 60.03182 * 1 2 3 31 31 H 1.09002 * 109.46912 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.50361 * 61.29258 * 4 2 1 33 33 H 1.09002 * 109.49813 * 181.36170 * 4 2 1 34 34 H 1.09002 * 109.51132 * 185.70651 * 5 4 2 35 35 H 1.09003 * 109.42984 * 65.42758 * 5 4 2 36 36 H 1.08003 * 119.75357 * 359.97438 * 11 10 7 37 37 H 1.07994 * 119.87886 * 179.97438 * 12 11 10 38 38 H 1.08000 * 120.12258 * 180.02562 * 13 12 11 39 39 H 0.97004 * 119.99526 * 179.97438 * 18 17 15 40 40 H 1.08004 * 120.12637 * 0.02562 * 23 10 7 41 41 H 1.09006 * 109.58324 * 66.43300 * 24 6 5 42 42 H 1.08995 * 109.59082 * 186.85846 * 24 6 5 43 43 H 1.09000 * 109.46559 * 304.83875 * 27 25 2 44 44 H 1.09000 * 109.46835 * 64.83786 * 27 25 2 45 45 H 0.96701 * 113.99702 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7205 -1.2501 5 6 1.5047 -2.1513 -1.2644 6 7 1.8626 -2.8088 -0.0003 7 16 2.6662 -4.2568 -0.0004 8 8 3.3371 -4.3436 1.2493 9 8 3.3367 -4.3436 -1.2502 10 6 1.4476 -5.5295 -0.0001 11 6 0.9698 -6.0284 -1.2024 12 6 0.0108 -7.0292 -1.2174 13 6 -0.4775 -7.5393 -0.0360 14 6 0.0001 -7.0407 1.1900 15 6 -0.4938 -7.5574 2.4099 16 1 0.1049 -7.4913 3.3062 17 6 -1.7610 -8.1495 2.4570 18 7 -2.6207 -7.9324 1.4950 19 14 -2.2249 -9.2499 3.8936 20 1 -1.0850 -9.3331 4.8416 21 1 -3.4071 -8.6822 4.5902 22 1 -2.5517 -10.6085 3.3910 23 6 0.9699 -6.0208 1.1930 24 6 1.4997 -2.1543 1.2640 25 6 2.0399 -0.7208 1.2501 26 1 3.1296 -0.7428 1.2383 27 6 1.5568 0.0192 2.4991 28 8 2.1249 -0.5872 3.6616 29 1 -0.3634 0.5142 0.8897 30 1 -0.3633 0.5134 -0.8903 31 1 -0.3633 -1.0277 0.0005 32 1 1.6959 -0.1933 -2.1398 33 1 3.1297 -0.7421 -1.2386 34 1 1.9466 -2.6970 -2.0981 35 1 0.4201 -2.1317 -1.3718 36 1 1.3471 -5.6337 -2.1343 37 1 -0.3545 -7.4101 -2.1596 38 1 -1.2243 -8.3193 -0.0500 39 1 -3.4988 -8.3431 1.5276 40 1 1.3401 -5.6276 2.1283 41 1 0.4147 -2.1349 1.3671 42 1 1.9383 -2.7019 2.0981 43 1 1.8665 1.0629 2.4454 44 1 0.4696 -0.0348 2.5556 45 1 1.8615 -0.1681 4.4923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598626323.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:10 Heat of formation + Delta-G solvation = -116.648845 kcal Electronic energy + Delta-G solvation = -28485.255659 eV Core-core repulsion = 24593.747720 eV Total energy + Delta-G solvation = -3891.507939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.55040 -37.61065 -36.73959 -36.51422 -35.24976 -33.82841 -33.49865 -31.56188 -30.05536 -29.75874 -27.74868 -25.79582 -25.45417 -23.97344 -22.02936 -21.78767 -20.95180 -19.26320 -18.43243 -17.62499 -17.40079 -17.09531 -15.99193 -15.88444 -15.30119 -15.11978 -14.78304 -14.74841 -14.36238 -14.15230 -14.00506 -13.59484 -13.39792 -13.32365 -12.78996 -12.56774 -12.16825 -12.11987 -11.87433 -11.82690 -11.57394 -11.44779 -11.36795 -11.34147 -11.25593 -11.09523 -10.97127 -10.94722 -10.87890 -10.58435 -10.48022 -10.27738 -9.99137 -9.73782 -9.55937 -9.34552 -8.66273 -8.00024 -7.68196 -6.91396 -4.52009 1.02700 2.22550 2.64075 3.01040 3.05374 3.08225 3.51226 3.84204 4.07131 4.30845 4.43699 4.58292 4.67497 4.85036 4.90337 5.05051 5.16547 5.20744 5.32661 5.41487 5.43076 5.46967 5.51601 5.56735 5.71471 5.80837 5.85264 5.91889 6.02060 6.06412 6.11177 6.19230 6.20419 6.34949 6.42815 6.67376 6.74090 6.79281 6.97351 7.06910 7.24208 7.41016 7.56734 7.74581 7.83205 7.96270 8.42472 8.68706 8.73885 10.04051 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012578 B = 0.003894 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.531628 B = 7189.383619 C = 8111.790513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.082 4.082 3 H 0.071 0.929 4 C -0.125 4.125 5 C 0.117 3.883 6 N -0.999 5.999 7 S 2.686 3.314 8 O -0.967 6.967 9 O -0.975 6.975 10 C -0.632 4.632 11 C -0.148 4.148 12 C -0.121 4.121 13 C -0.119 4.119 14 C 0.091 3.909 15 C -0.460 4.460 16 H 0.083 0.917 17 C 0.075 3.925 18 N -0.796 5.796 19 Si 0.911 3.089 20 H -0.258 1.258 21 H -0.274 1.274 22 H -0.271 1.271 23 C -0.123 4.123 24 C 0.128 3.872 25 C -0.096 4.096 26 H 0.082 0.918 27 C 0.081 3.919 28 O -0.568 6.568 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.282 0.718 40 H 0.111 0.889 41 H 0.069 0.931 42 H 0.101 0.899 43 H 0.045 0.955 44 H 0.051 0.949 45 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.731 15.040 -1.581 15.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.100 4.100 3 H 0.089 0.911 4 C -0.164 4.164 5 C -0.009 4.009 6 N -0.835 5.835 7 S 2.784 3.216 8 O -0.958 6.958 9 O -0.965 6.965 10 C -0.724 4.724 11 C -0.169 4.169 12 C -0.141 4.141 13 C -0.138 4.138 14 C 0.088 3.912 15 C -0.489 4.489 16 H 0.101 0.899 17 C -0.143 4.143 18 N -0.421 5.421 19 Si 0.735 3.265 20 H -0.182 1.182 21 H -0.199 1.199 22 H -0.196 1.196 23 C -0.145 4.145 24 C 0.003 3.997 25 C -0.116 4.116 26 H 0.100 0.900 27 C 0.003 3.997 28 O -0.373 6.373 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.142 0.858 39 H 0.093 0.907 40 H 0.129 0.871 41 H 0.087 0.913 42 H 0.119 0.881 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 2.679 14.507 -2.107 14.902 hybrid contribution -1.458 -0.383 0.956 1.785 sum 1.221 14.124 -1.151 14.223 Atomic orbital electron populations 1.22044 0.94992 1.02947 1.01544 1.21017 0.96169 0.98781 0.94078 0.91074 1.21815 1.01320 0.95707 0.97589 1.21345 1.00616 0.93437 0.85476 1.57732 1.76756 1.37609 1.11415 1.01794 0.74259 0.72625 0.72950 1.93524 1.71952 1.86240 1.44038 1.93486 1.72176 1.86465 1.44412 1.29845 1.21830 1.20473 1.00215 1.20065 1.00761 1.01748 0.94322 1.20808 0.97796 0.98090 0.97375 1.21634 1.00717 1.00015 0.91465 1.17688 0.90419 0.89514 0.93588 1.19652 1.00473 1.32906 0.95900 0.89871 1.25931 0.95853 0.94996 0.97477 1.69796 1.05703 1.34557 1.32030 0.86215 0.79274 0.79890 0.81161 1.18183 1.19885 1.19606 1.20788 1.00902 0.98513 0.94282 1.21418 1.00305 0.92681 0.85331 1.21487 1.01738 0.95445 0.92902 0.89952 1.22234 0.96860 0.95191 0.85429 1.86562 1.74087 1.60376 1.16320 0.92666 0.92578 0.91349 0.90597 0.91361 0.88936 0.91163 0.87716 0.88419 0.85752 0.90692 0.87099 0.91250 0.88126 0.93676 0.93108 0.77596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 8.11 37.16 0.30 -1.13 16 2 C -0.08 -0.79 2.71 -90.58 -0.25 -1.04 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.13 -1.30 5.61 -26.83 -0.15 -1.45 16 5 C 0.12 1.52 5.98 -3.94 -0.02 1.50 16 6 N -1.00 -15.85 3.30 -113.77 -0.37 -16.23 16 7 S 2.69 53.30 5.73 -107.50 -0.62 52.68 16 8 O -0.97 -21.40 15.86 -57.17 -0.91 -22.31 16 9 O -0.97 -20.39 15.85 -57.17 -0.91 -21.30 16 10 C -0.63 -14.25 5.96 -39.66 -0.24 -14.48 16 11 C -0.15 -3.28 9.53 -39.29 -0.37 -3.66 16 12 C -0.12 -2.76 10.02 -39.66 -0.40 -3.16 16 13 C -0.12 -2.99 8.70 -38.87 -0.34 -3.32 16 14 C 0.09 2.39 5.57 -106.83 -0.60 1.80 16 15 C -0.46 -11.92 9.05 -37.74 -0.34 -12.26 16 16 H 0.08 2.09 7.91 -52.49 -0.41 1.67 16 17 C 0.08 1.82 5.15 -17.34 -0.09 1.73 16 18 N -0.80 -19.71 10.95 55.55 0.61 -19.10 16 19 Si 0.91 18.14 29.60 -169.99 -5.03 13.11 16 20 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 23 C -0.12 -3.03 9.26 -38.88 -0.36 -3.39 16 24 C 0.13 1.89 5.13 -3.71 -0.02 1.87 16 25 C -0.10 -1.13 2.35 -90.50 -0.21 -1.35 16 26 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 27 C 0.08 0.80 5.97 37.16 0.22 1.03 16 28 O -0.57 -6.49 13.30 -35.23 -0.47 -6.96 16 29 H 0.05 0.44 6.57 -51.93 -0.34 0.10 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.72 4.99 -51.93 -0.26 0.47 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.24 6.91 -51.93 -0.36 0.88 16 35 H 0.07 0.84 6.70 -51.93 -0.35 0.49 16 36 H 0.10 2.09 7.60 -52.48 -0.40 1.69 16 37 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 38 H 0.12 3.18 6.16 -52.49 -0.32 2.85 16 39 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 40 H 0.11 2.63 7.61 -52.48 -0.40 2.23 16 41 H 0.07 0.96 6.69 -51.93 -0.35 0.61 16 42 H 0.10 1.70 6.76 -51.93 -0.35 1.35 16 43 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.05 0.45 6.72 -51.93 -0.35 0.10 16 45 H 0.38 2.47 9.12 45.56 0.42 2.89 16 LS Contribution 363.95 15.07 5.48 5.48 Total: -1.00 -31.75 363.95 -10.64 -42.39 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -5.57 Total: 9.55 kcal Atomic # 6 Polarization: -34.46 SS G_CDS: -2.86 Total: -37.32 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.23 Total: -35.33 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: -2.28 Total: -50.57 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Atomic # 16 Polarization: 53.30 SS G_CDS: -0.62 Total: 52.68 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.75 -10.64 -42.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598626323.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.262 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds