Wall clock time and date at job start Tue Mar 31 2020 22:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 116.99869 * 2 1 4 4 C 1.39038 * 120.10542 * 359.95211 * 3 2 1 5 5 C 1.38126 * 119.93844 * 180.02562 * 4 3 2 6 6 C 1.38204 * 120.02419 * 0.03617 * 5 4 3 7 7 C 1.38448 * 120.22283 * 359.97438 * 6 5 4 8 8 C 1.38158 * 120.04339 * 359.97438 * 7 6 5 9 9 C 1.50770 * 108.90317 * 179.97438 * 8 7 6 10 10 N 1.46639 * 107.69593 * 0.03947 * 9 8 7 11 11 S 1.65594 * 126.57020 * 180.02562 * 10 9 8 12 12 O 1.42102 * 104.27889 * 26.06788 * 11 10 9 13 13 O 1.42106 * 104.28020 * 153.92577 * 11 10 9 14 14 C 1.81399 * 104.45246 * 269.99780 * 11 10 9 15 15 C 1.52997 * 109.47348 * 179.97438 * 14 11 10 16 16 C 1.52992 * 109.47602 * 300.00414 * 15 14 11 17 17 C 1.53007 * 109.46898 * 60.00204 * 15 14 11 18 18 C 1.50696 * 109.47111 * 179.97438 * 15 14 11 19 19 H 1.08003 * 120.00084 * 0.02562 * 18 15 14 20 20 C 1.37882 * 120.00183 * 180.02562 * 18 15 14 21 21 N 1.31508 * 119.99857 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 120.00112 * 180.02562 * 20 18 15 23 23 H 1.48504 * 109.47071 * 0.02562 * 22 20 18 24 24 H 1.48510 * 109.47015 * 119.99937 * 22 20 18 25 25 H 1.48495 * 109.47250 * 240.00060 * 22 20 18 26 26 C 1.46638 * 106.86419 * 359.97438 * 10 9 8 27 27 H 1.09005 * 109.47296 * 59.99655 * 1 2 3 28 28 H 1.08993 * 109.47212 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46812 * 300.00037 * 1 2 3 30 30 H 1.08003 * 120.01400 * 0.04818 * 4 3 2 31 31 H 1.08001 * 119.98656 * 180.02562 * 5 4 3 32 32 H 1.08000 * 119.89175 * 180.02562 * 6 5 4 33 33 H 1.08997 * 109.81336 * 240.49223 * 9 8 7 34 34 H 1.08999 * 109.87019 * 119.61401 * 9 8 7 35 35 H 1.09003 * 109.47031 * 300.00235 * 14 11 10 36 36 H 1.09003 * 109.46762 * 59.99631 * 14 11 10 37 37 H 1.09005 * 109.47201 * 59.99462 * 16 15 14 38 38 H 1.09001 * 109.47635 * 180.02562 * 16 15 14 39 39 H 1.09003 * 109.46774 * 300.00102 * 16 15 14 40 40 H 1.09003 * 109.46903 * 59.99689 * 17 15 14 41 41 H 1.08994 * 109.46952 * 179.97438 * 17 15 14 42 42 H 1.08997 * 109.47160 * 300.00113 * 17 15 14 43 43 H 0.97002 * 120.00125 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.81272 * 119.55054 * 26 10 9 45 45 H 1.09004 * 109.81012 * 240.38798 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2908 2.3783 -0.0010 5 6 1.9215 3.6072 -0.0015 6 6 3.3018 3.6762 -0.0018 7 6 4.0575 2.5161 -0.0010 8 6 3.4329 1.2837 0.0006 9 6 4.4845 0.2033 0.0005 10 7 5.7965 0.8581 -0.0004 11 16 7.2732 0.1088 -0.0014 12 8 7.0256 -1.1529 -0.6064 13 8 8.1451 1.0534 -0.6072 14 6 7.6781 -0.0961 1.7549 15 6 9.0370 -0.7863 1.8879 16 6 8.9802 -2.1587 1.2142 17 6 10.1116 0.0689 1.2132 18 6 9.3736 -0.9559 3.3470 19 1 8.6868 -0.6068 4.1038 20 6 10.5585 -1.5569 3.7159 21 7 11.3951 -1.9816 2.7944 22 14 10.9754 -1.7678 5.5245 23 1 9.8767 -1.2109 6.3539 24 1 11.1417 -3.2118 5.8290 25 1 12.2388 -1.0491 5.8283 26 6 5.5504 2.3037 -0.0014 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 0.2122 2.3240 -0.0010 31 1 1.3357 4.5146 -0.0019 32 1 3.7927 4.6382 -0.0018 33 1 4.3793 -0.4145 -0.8914 34 1 4.3807 -0.4148 0.8923 35 1 7.7183 0.8817 2.2350 36 1 6.9128 -0.7056 2.2355 37 1 8.7369 -2.0356 0.1588 38 1 9.9482 -2.6507 1.3093 39 1 8.2146 -2.7679 1.6948 40 1 10.1521 1.0467 1.6932 41 1 11.0797 -0.4226 1.3084 42 1 9.8683 0.1920 0.1579 43 1 12.2285 -2.4048 3.0538 44 1 5.9872 2.7535 0.8903 45 1 5.9877 2.7523 -0.8934 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599482553.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:04 Heat of formation + Delta-G solvation = -68.093118 kcal Electronic energy + Delta-G solvation = -28011.818607 eV Core-core repulsion = 24122.416202 eV Total energy + Delta-G solvation = -3889.402405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.80545 -38.65008 -36.59519 -36.31436 -36.12069 -35.31887 -31.66655 -31.15280 -30.72589 -27.77462 -27.61130 -26.66494 -25.71777 -25.23240 -24.28005 -21.75101 -21.42494 -19.47532 -18.61991 -17.92599 -17.35179 -16.34726 -16.24439 -16.09882 -15.84543 -15.71095 -15.40123 -14.77956 -14.72562 -14.56333 -13.99394 -13.25270 -13.16505 -13.00756 -12.94913 -12.87425 -12.65419 -12.51203 -12.18104 -12.09001 -11.83261 -11.56985 -11.47765 -11.33394 -11.17865 -11.11378 -11.07565 -10.92976 -10.71032 -10.37469 -10.28611 -10.11896 -9.71161 -9.65550 -9.34728 -8.73534 -8.49312 -8.40585 -8.33562 -6.03600 -4.15506 0.73104 0.99927 1.16436 2.96448 3.08330 3.25275 3.33702 3.36555 3.42882 3.98727 4.31348 4.34786 4.40019 4.61679 4.68863 4.78956 4.84103 4.98892 5.04542 5.18385 5.21103 5.21781 5.33298 5.45149 5.52089 5.59449 5.65785 5.69760 5.80907 5.91705 6.14364 6.15681 6.18369 6.37599 6.42201 6.54403 6.70442 6.79317 6.90114 7.03915 7.10291 7.31453 7.50157 7.68115 7.98094 8.09500 8.32712 8.83246 9.49959 10.97789 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017641 B = 0.002998 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.798233 B = 9335.867313 C = 9618.504793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.148 3.852 4 C -0.208 4.208 5 C -0.077 4.077 6 C -0.135 4.135 7 C -0.058 4.058 8 C -0.132 4.132 9 C 0.176 3.824 10 N -1.020 6.020 11 S 2.612 3.388 12 O -0.953 6.953 13 O -0.954 6.954 14 C -0.579 4.579 15 C 0.081 3.919 16 C -0.164 4.164 17 C -0.164 4.164 18 C -0.501 4.501 19 H 0.060 0.940 20 C 0.064 3.936 21 N -0.883 5.883 22 Si 0.896 3.104 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.283 1.283 26 C 0.164 3.836 27 H 0.055 0.945 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.027 0.973 38 H 0.096 0.904 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.096 0.904 42 H 0.027 0.973 43 H 0.262 0.738 44 H 0.084 0.916 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.951 9.366 -5.135 23.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.103 3.897 4 C -0.226 4.226 5 C -0.095 4.095 6 C -0.154 4.154 7 C -0.060 4.060 8 C -0.134 4.134 9 C 0.050 3.950 10 N -0.855 5.855 11 S 2.712 3.288 12 O -0.944 6.944 13 O -0.945 6.945 14 C -0.713 4.713 15 C 0.079 3.921 16 C -0.222 4.222 17 C -0.222 4.222 18 C -0.541 4.541 19 H 0.078 0.922 20 C -0.138 4.138 21 N -0.521 5.521 22 Si 0.724 3.276 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.209 1.209 26 C 0.038 3.962 27 H 0.074 0.926 28 H 0.119 0.881 29 H 0.074 0.926 30 H 0.149 0.851 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.046 0.954 38 H 0.114 0.886 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.114 0.886 42 H 0.046 0.954 43 H 0.072 0.928 44 H 0.101 0.899 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.133 8.785 -5.978 22.765 hybrid contribution -0.342 0.152 1.745 1.785 sum -20.476 8.936 -4.232 22.738 Atomic orbital electron populations 1.23077 0.78343 1.04127 1.01255 1.86132 1.21387 1.26644 1.88446 1.18479 0.90026 0.84619 0.96614 1.21194 0.99901 0.91967 1.09580 1.20823 0.94051 0.97082 0.97578 1.20416 0.93335 0.97280 1.04362 1.20333 0.95176 0.92867 0.97612 1.19662 0.90823 0.96194 1.06711 1.19763 0.79382 0.92939 1.02867 1.58850 1.21154 1.14207 1.91281 1.05389 0.70615 0.73387 0.79406 1.93547 1.83394 1.42010 1.75426 1.93543 1.62547 1.62978 1.75434 1.30571 1.10318 1.10014 1.20422 1.17956 0.84868 0.91305 0.97969 1.22280 1.04269 0.99138 0.96487 1.22283 1.04248 0.99183 0.96462 1.20979 1.04089 1.39123 0.89869 0.92217 1.24941 0.96103 0.95126 0.97583 1.69809 1.10400 1.39850 1.32088 0.86474 0.78326 0.77838 0.84975 1.19831 1.20936 1.20940 1.19985 0.91432 0.81739 1.03031 0.92645 0.88103 0.92618 0.85067 0.85259 0.85356 0.89774 0.90275 0.86279 0.86262 0.95378 0.88581 0.94401 0.94410 0.88564 0.95390 0.92780 0.89851 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.41 10.47 -19.42 -0.20 -3.62 16 3 C 0.15 1.70 6.70 -39.04 -0.26 1.44 16 4 C -0.21 -1.87 9.05 -39.33 -0.36 -2.23 16 5 C -0.08 -0.65 10.04 -39.63 -0.40 -1.05 16 6 C -0.14 -1.29 10.04 -39.52 -0.40 -1.69 16 7 C -0.06 -0.70 6.22 -104.53 -0.65 -1.35 16 8 C -0.13 -1.72 6.18 -104.38 -0.65 -2.36 16 9 C 0.18 2.53 6.90 -5.08 -0.04 2.49 16 10 N -1.02 -15.92 3.64 -116.65 -0.42 -16.35 16 11 S 2.61 50.31 4.71 -107.50 -0.51 49.80 16 12 O -0.95 -20.55 15.27 -57.54 -0.88 -21.43 16 13 O -0.95 -20.22 15.27 -57.54 -0.88 -21.10 16 14 C -0.58 -11.53 5.12 37.16 0.19 -11.34 16 15 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 16 C -0.16 -4.07 7.78 37.15 0.29 -3.78 16 17 C -0.16 -4.05 7.77 37.16 0.29 -3.76 16 18 C -0.50 -13.23 8.01 -34.44 -0.28 -13.50 16 19 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 20 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 21 N -0.88 -24.15 9.35 55.43 0.52 -23.63 16 22 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.16 2.14 6.94 -5.07 -0.04 2.11 16 27 H 0.05 0.28 7.66 -51.93 -0.40 -0.11 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.29 7.67 -51.92 -0.40 -0.11 16 30 H 0.13 0.84 6.32 -52.48 -0.33 0.50 16 31 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.12 2.14 8.14 -51.92 -0.42 1.72 16 36 H 0.12 2.18 8.14 -51.92 -0.42 1.76 16 37 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 38 H 0.10 2.56 6.07 -51.93 -0.32 2.24 16 39 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.10 2.55 6.07 -51.93 -0.32 2.24 16 42 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 43 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 365.96 15.07 5.51 5.51 Total: -1.00 -32.66 365.96 -9.86 -42.52 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.52 Total: 2.95 kcal Atomic # 6 Polarization: -28.87 SS G_CDS: -1.47 Total: -30.33 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.09 Total: -39.98 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -1.96 Total: -46.15 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 50.31 SS G_CDS: -0.51 Total: 49.80 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.66 -9.86 -42.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599482553.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.570 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds