Wall clock time and date at job start Tue Mar 31 2020 22:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 116.99869 * 2 1 4 4 C 1.39038 * 120.10542 * 359.95211 * 3 2 1 5 5 C 1.38126 * 119.93844 * 180.02562 * 4 3 2 6 6 C 1.38204 * 120.02419 * 0.03617 * 5 4 3 7 7 C 1.38448 * 120.22283 * 359.97438 * 6 5 4 8 8 C 1.38158 * 120.04339 * 359.97438 * 7 6 5 9 9 C 1.50770 * 108.90317 * 179.97438 * 8 7 6 10 10 N 1.46639 * 107.69593 * 0.03947 * 9 8 7 11 11 S 1.65594 * 126.57020 * 180.02562 * 10 9 8 12 12 O 1.42102 * 104.27889 * 26.06788 * 11 10 9 13 13 O 1.42106 * 104.28020 * 153.92577 * 11 10 9 14 14 C 1.81399 * 104.45246 * 269.99780 * 11 10 9 15 15 C 1.52997 * 109.47348 * 179.97438 * 14 11 10 16 16 C 1.52992 * 109.47602 * 300.00414 * 15 14 11 17 17 C 1.53007 * 109.46898 * 60.00204 * 15 14 11 18 18 C 1.50696 * 109.47111 * 179.97438 * 15 14 11 19 19 H 1.08003 * 120.00084 * 0.02562 * 18 15 14 20 20 C 1.37882 * 120.00183 * 180.02562 * 18 15 14 21 21 N 1.31508 * 119.99857 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 120.00112 * 180.02562 * 20 18 15 23 23 H 1.48504 * 109.47071 * 0.02562 * 22 20 18 24 24 H 1.48510 * 109.47015 * 119.99937 * 22 20 18 25 25 H 1.48495 * 109.47250 * 240.00060 * 22 20 18 26 26 C 1.46638 * 106.86419 * 359.97438 * 10 9 8 27 27 H 1.09005 * 109.47296 * 59.99655 * 1 2 3 28 28 H 1.08993 * 109.47212 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46812 * 300.00037 * 1 2 3 30 30 H 1.08003 * 120.01400 * 0.04818 * 4 3 2 31 31 H 1.08001 * 119.98656 * 180.02562 * 5 4 3 32 32 H 1.08000 * 119.89175 * 180.02562 * 6 5 4 33 33 H 1.08997 * 109.81336 * 240.49223 * 9 8 7 34 34 H 1.08999 * 109.87019 * 119.61401 * 9 8 7 35 35 H 1.09003 * 109.47031 * 300.00235 * 14 11 10 36 36 H 1.09003 * 109.46762 * 59.99631 * 14 11 10 37 37 H 1.09005 * 109.47201 * 59.99462 * 16 15 14 38 38 H 1.09001 * 109.47635 * 180.02562 * 16 15 14 39 39 H 1.09003 * 109.46774 * 300.00102 * 16 15 14 40 40 H 1.09003 * 109.46903 * 59.99689 * 17 15 14 41 41 H 1.08994 * 109.46952 * 179.97438 * 17 15 14 42 42 H 1.08997 * 109.47160 * 300.00113 * 17 15 14 43 43 H 0.97002 * 120.00125 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.81272 * 119.55054 * 26 10 9 45 45 H 1.09004 * 109.81012 * 240.38798 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2908 2.3783 -0.0010 5 6 1.9215 3.6072 -0.0015 6 6 3.3018 3.6762 -0.0018 7 6 4.0575 2.5161 -0.0010 8 6 3.4329 1.2837 0.0006 9 6 4.4845 0.2033 0.0005 10 7 5.7965 0.8581 -0.0004 11 16 7.2732 0.1088 -0.0014 12 8 7.0256 -1.1529 -0.6064 13 8 8.1451 1.0534 -0.6072 14 6 7.6781 -0.0961 1.7549 15 6 9.0370 -0.7863 1.8879 16 6 8.9802 -2.1587 1.2142 17 6 10.1116 0.0689 1.2132 18 6 9.3736 -0.9559 3.3470 19 1 8.6868 -0.6068 4.1038 20 6 10.5585 -1.5569 3.7159 21 7 11.3951 -1.9816 2.7944 22 14 10.9754 -1.7678 5.5245 23 1 9.8767 -1.2109 6.3539 24 1 11.1417 -3.2118 5.8290 25 1 12.2388 -1.0491 5.8283 26 6 5.5504 2.3037 -0.0014 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 0.2122 2.3240 -0.0010 31 1 1.3357 4.5146 -0.0019 32 1 3.7927 4.6382 -0.0018 33 1 4.3793 -0.4145 -0.8914 34 1 4.3807 -0.4148 0.8923 35 1 7.7183 0.8817 2.2350 36 1 6.9128 -0.7056 2.2355 37 1 8.7369 -2.0356 0.1588 38 1 9.9482 -2.6507 1.3093 39 1 8.2146 -2.7679 1.6948 40 1 10.1521 1.0467 1.6932 41 1 11.0797 -0.4226 1.3084 42 1 9.8683 0.1920 0.1579 43 1 12.2285 -2.4048 3.0538 44 1 5.9872 2.7535 0.8903 45 1 5.9877 2.7523 -0.8934 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599482553.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:03 Heat of formation + Delta-G solvation = -88.857110 kcal Electronic energy + Delta-G solvation = -28012.719001 eV Core-core repulsion = 24122.416202 eV Total energy + Delta-G solvation = -3890.302799 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.60292 -39.46722 -38.23278 -38.16549 -37.08952 -36.91249 -33.65191 -31.98078 -31.61593 -28.65710 -28.45932 -28.12779 -27.71148 -27.26679 -25.26869 -22.57330 -22.20744 -21.34167 -20.03899 -18.99362 -18.47098 -17.91741 -17.37297 -17.35541 -16.96582 -16.71627 -16.56382 -16.42091 -16.00197 -15.57323 -15.08925 -14.75754 -14.66342 -14.45258 -14.05919 -13.99609 -13.84571 -13.81429 -13.40899 -13.37302 -13.15805 -12.93570 -12.91863 -12.80252 -12.77022 -12.54565 -12.30498 -12.21929 -12.13767 -12.02050 -11.93688 -11.87847 -11.59263 -11.44606 -10.73490 -10.43291 -10.39939 -9.44480 -9.12592 -8.04276 -6.23034 -0.80712 0.23544 0.42312 1.42843 1.45737 1.55529 1.63729 2.38419 2.43628 2.68652 2.80239 2.89946 3.18358 3.42498 3.49118 3.93270 4.03732 4.09068 4.15654 4.22493 4.35890 4.42663 4.45587 4.46836 4.48708 4.54063 4.57375 4.71627 4.77631 4.82809 4.83922 4.93544 4.95141 4.99901 5.03019 5.13515 5.31325 5.36331 5.46249 5.49207 5.57789 5.63685 5.79636 5.95664 6.09365 6.32336 6.43271 6.81473 7.45307 8.95960 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017641 B = 0.002998 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.798233 B = 9335.867313 C = 9618.504793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.136 3.864 4 C -0.204 4.204 5 C -0.069 4.069 6 C -0.137 4.137 7 C -0.070 4.070 8 C -0.162 4.162 9 C 0.171 3.829 10 N -1.018 6.018 11 S 2.634 3.366 12 O -0.981 6.981 13 O -0.976 6.976 14 C -0.581 4.581 15 C 0.069 3.931 16 C -0.160 4.160 17 C -0.160 4.160 18 C -0.518 4.518 19 H 0.063 0.937 20 C 0.018 3.982 21 N -0.907 5.907 22 Si 0.956 3.044 23 H -0.266 1.266 24 H -0.283 1.283 25 H -0.282 1.282 26 C 0.153 3.847 27 H 0.069 0.931 28 H 0.113 0.887 29 H 0.069 0.931 30 H 0.160 0.840 31 H 0.166 0.834 32 H 0.152 0.848 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.031 0.969 38 H 0.073 0.927 39 H 0.039 0.961 40 H 0.042 0.958 41 H 0.073 0.927 42 H 0.032 0.968 43 H 0.262 0.738 44 H 0.099 0.901 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.592 11.373 -4.286 26.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.090 3.910 4 C -0.222 4.222 5 C -0.087 4.087 6 C -0.155 4.155 7 C -0.072 4.072 8 C -0.164 4.164 9 C 0.046 3.954 10 N -0.855 5.855 11 S 2.734 3.266 12 O -0.972 6.972 13 O -0.967 6.967 14 C -0.715 4.715 15 C 0.067 3.933 16 C -0.218 4.218 17 C -0.218 4.218 18 C -0.557 4.557 19 H 0.081 0.919 20 C -0.181 4.181 21 N -0.546 5.546 22 Si 0.782 3.218 23 H -0.190 1.190 24 H -0.209 1.209 25 H -0.208 1.208 26 C 0.028 3.972 27 H 0.088 0.912 28 H 0.131 0.869 29 H 0.088 0.912 30 H 0.178 0.822 31 H 0.183 0.817 32 H 0.170 0.830 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.091 0.909 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.117 0.883 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.778 10.792 -5.125 25.721 hybrid contribution 0.345 -0.438 1.435 1.540 sum -22.433 10.355 -3.690 24.982 Atomic orbital electron populations 1.23371 0.76170 1.05524 1.02576 1.86097 1.23753 1.26926 1.88485 1.18689 0.89722 0.85691 0.96882 1.21574 1.01282 0.91267 1.08096 1.21290 0.93782 0.98204 0.95410 1.20763 0.93994 0.97335 1.03439 1.20343 0.94262 0.93566 0.98995 1.19652 0.91485 0.95854 1.09391 1.19827 0.79389 0.93728 1.02464 1.58390 1.20519 1.15713 1.90882 1.04403 0.70879 0.72594 0.78732 1.93503 1.84099 1.43681 1.75898 1.93504 1.64039 1.63353 1.75757 1.30494 1.08285 1.10947 1.21737 1.17949 0.87046 0.91238 0.97059 1.22217 1.02979 0.99677 0.96957 1.22214 1.03372 0.99249 0.96969 1.21302 1.04289 1.39104 0.90974 0.91921 1.25680 0.96171 0.95015 1.01273 1.69943 1.10631 1.40282 1.33729 0.85537 0.78103 0.77569 0.80600 1.19028 1.20926 1.20802 1.20241 0.92999 0.79961 1.03966 0.91238 0.86888 0.91223 0.82242 0.81690 0.83029 0.90998 0.90113 0.84290 0.84786 0.94976 0.90819 0.94151 0.93838 0.90852 0.94920 0.92849 0.88262 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -7.06 10.47 -92.42 -0.97 -8.03 16 3 C 0.14 2.92 6.70 22.62 0.15 3.07 16 4 C -0.20 -3.00 9.05 22.44 0.20 -2.80 16 5 C -0.07 -0.88 10.04 22.24 0.22 -0.66 16 6 C -0.14 -2.21 10.04 22.31 0.22 -1.98 16 7 C -0.07 -1.59 6.22 -19.80 -0.12 -1.71 16 8 C -0.16 -4.11 6.18 -19.71 -0.12 -4.23 16 9 C 0.17 4.99 6.90 85.63 0.59 5.58 16 10 N -1.02 -31.71 3.64 -522.96 -1.90 -33.61 16 11 S 2.63 101.95 4.71 -56.49 -0.27 101.68 16 12 O -0.98 -43.13 15.27 -127.65 -1.95 -45.07 16 13 O -0.98 -41.50 15.27 -127.65 -1.95 -43.45 16 14 C -0.58 -22.88 5.12 71.98 0.37 -22.51 16 15 C 0.07 3.40 0.52 -52.93 -0.03 3.37 16 16 C -0.16 -8.13 7.78 71.98 0.56 -7.57 16 17 C -0.16 -8.02 7.77 71.98 0.56 -7.46 16 18 C -0.52 -27.24 8.01 25.60 0.21 -27.03 16 19 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 20 C 0.02 0.96 5.15 84.66 0.44 1.40 16 21 N -0.91 -50.45 9.35 21.45 0.20 -50.25 16 22 Si 0.96 42.36 29.54 68.60 2.03 44.39 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 26 C 0.15 3.87 6.94 85.64 0.59 4.46 16 27 H 0.07 0.52 7.66 -2.38 -0.02 0.51 16 28 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 0.53 7.67 -2.38 -0.02 0.51 16 30 H 0.16 1.35 6.32 -2.91 -0.02 1.33 16 31 H 0.17 0.93 8.06 -2.91 -0.02 0.90 16 32 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 33 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.14 4.84 8.14 -2.39 -0.02 4.82 16 36 H 0.13 4.81 8.14 -2.39 -0.02 4.79 16 37 H 0.03 1.55 5.46 -2.38 -0.01 1.54 16 38 H 0.07 4.04 6.07 -2.39 -0.01 4.03 16 39 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.07 3.99 6.07 -2.39 -0.01 3.98 16 42 H 0.03 1.56 5.46 -2.39 -0.01 1.54 16 43 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 44 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 Total: -1.00 -70.97 365.96 1.14 -69.83 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 1.00 Total: 21.29 kcal Atomic # 6 Polarization: -61.72 SS G_CDS: 4.96 Total: -56.77 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -1.70 Total: -83.86 kcal Atomic # 8 Polarization: -91.69 SS G_CDS: -4.87 Total: -96.55 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: 101.95 SS G_CDS: -0.27 Total: 101.68 kcal Total: -70.97 1.14 -69.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599482553.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.032 kcal (2) G-P(sol) polarization free energy of solvation -70.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds