Wall clock time and date at job start Tue Mar 31 2020 22:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47240 * 2 1 4 4 H 1.08995 * 109.68063 * 55.04820 * 3 2 1 5 5 C 1.53296 * 109.68353 * 294.52919 * 3 2 1 6 6 O 1.42956 * 109.22632 * 187.97391 * 5 3 2 7 7 C 1.42960 * 114.16535 * 62.58144 * 6 5 3 8 8 H 1.08999 * 109.51441 * 57.39892 * 7 6 5 9 9 C 1.53001 * 109.51554 * 177.49939 * 7 6 5 10 10 C 1.53296 * 109.22487 * 297.42026 * 7 6 5 11 11 N 1.47151 * 109.67990 * 175.60754 * 3 2 1 12 12 S 1.65602 * 120.98428 * 350.27579 * 11 3 2 13 13 O 1.42104 * 106.39892 * 35.82270 * 12 11 3 14 14 O 1.42100 * 106.40167 * 168.73617 * 12 11 3 15 15 C 1.76198 * 107.21833 * 282.28147 * 12 11 3 16 16 C 1.37642 * 120.12608 * 115.67556 * 15 12 11 17 17 C 1.38610 * 120.24543 * 179.72456 * 16 15 12 18 18 C 1.38654 * 120.50300 * 0.54171 * 17 16 15 19 19 C 1.37600 * 120.24857 * 359.73633 * 18 17 16 20 20 C 1.40696 * 120.12676 * 295.94216 * 15 12 11 21 21 C 1.41396 * 120.24512 * 359.97438 * 20 15 12 22 22 H 1.08002 * 119.99821 * 325.15291 * 21 20 15 23 23 C 1.39936 * 119.99938 * 145.15904 * 21 20 15 24 24 N 1.30824 * 120.00148 * 168.03769 * 23 21 20 25 25 Si 1.86799 * 120.00187 * 348.03223 * 23 21 20 26 26 H 1.48502 * 109.46933 * 86.81019 * 25 23 21 27 27 H 1.48500 * 109.47319 * 206.80627 * 25 23 21 28 28 H 1.48500 * 109.47400 * 326.81266 * 25 23 21 29 29 H 1.09001 * 109.47271 * 185.45634 * 1 2 3 30 30 H 1.08995 * 109.46560 * 305.45737 * 1 2 3 31 31 H 1.08998 * 109.47063 * 65.45085 * 1 2 3 32 32 H 1.09009 * 109.46806 * 240.00017 * 2 1 3 33 33 H 1.09001 * 109.47042 * 120.00669 * 2 1 3 34 34 H 1.09004 * 109.51064 * 68.04989 * 5 3 2 35 35 H 1.08999 * 109.51653 * 307.90507 * 5 3 2 36 36 H 1.09004 * 109.46995 * 59.99706 * 9 7 6 37 37 H 1.08998 * 109.47459 * 180.02562 * 9 7 6 38 38 H 1.09002 * 109.46859 * 300.00448 * 9 7 6 39 39 H 1.08999 * 109.68464 * 172.02305 * 10 7 6 40 40 H 1.08997 * 109.68391 * 292.57868 * 10 7 6 41 41 H 1.08004 * 119.87325 * 359.96608 * 16 15 12 42 42 H 1.08006 * 119.74898 * 180.25410 * 17 16 15 43 43 H 1.08002 * 119.88011 * 179.74891 * 18 17 16 44 44 H 1.07999 * 120.12974 * 180.02562 * 19 18 17 45 45 H 0.97004 * 120.00412 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6081 1.9845 0.8412 5 6 1.6472 2.1290 -1.3131 6 8 2.2830 3.4074 -1.3845 7 6 3.7113 3.3504 -1.4045 8 1 4.0397 2.7420 -2.2472 9 6 4.2774 4.7649 -1.5443 10 6 4.2100 2.7264 -0.0961 11 7 3.5077 1.4491 0.1061 12 16 4.3445 0.0603 0.4428 13 8 3.6538 -0.9935 -0.2143 14 8 5.7160 0.3525 0.2131 15 6 4.1824 -0.2403 2.1714 16 6 3.5211 -1.3616 2.6185 17 6 3.3971 -1.6034 3.9777 18 6 3.9264 -0.7154 4.9018 19 6 4.5865 0.4149 4.4775 20 6 4.7234 0.6678 3.0998 21 6 5.4004 1.8257 2.6521 22 1 5.9922 1.7900 1.7494 23 6 5.3036 3.0177 3.3788 24 7 6.1038 4.0163 3.1069 25 14 4.0318 3.1830 4.7369 26 1 4.5960 2.6647 6.0091 27 1 3.6682 4.6132 4.9032 28 1 2.8204 2.4026 4.3784 29 1 -0.3634 -1.0230 0.0977 30 1 -0.3632 0.5961 0.8371 31 1 -0.3633 0.4270 -0.9348 32 1 1.8934 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.5654 2.2580 -1.3470 35 1 1.9679 1.5154 -2.1550 36 1 3.9502 5.3723 -0.7003 37 1 5.3664 4.7206 -1.5599 38 1 3.9188 5.2097 -2.4726 39 1 5.2836 2.5490 -0.1597 40 1 3.9971 3.3981 0.7355 41 1 3.1007 -2.0575 1.9076 42 1 2.8801 -2.4879 4.3197 43 1 3.8204 -0.9117 5.9585 44 1 4.9984 1.1051 5.1989 45 1 6.0365 4.8428 3.6103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601304119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:39 Heat of formation + Delta-G solvation = -95.314231 kcal Electronic energy + Delta-G solvation = -30257.302756 eV Core-core repulsion = 26366.719955 eV Total energy + Delta-G solvation = -3890.582801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -39.30043 -37.93353 -36.84202 -35.26493 -34.93400 -33.90857 -33.36337 -31.20437 -30.75322 -30.17771 -27.35102 -25.78123 -25.32329 -23.63048 -22.07399 -21.34420 -21.14154 -20.62628 -18.22607 -17.77998 -16.97732 -16.50276 -16.28904 -15.72779 -15.42149 -14.92976 -14.50247 -14.43978 -14.28254 -14.17172 -13.66394 -13.51728 -13.35618 -13.01435 -12.82764 -12.33562 -12.31720 -12.17827 -12.05838 -11.92038 -11.63082 -11.40018 -11.35998 -11.25169 -11.06528 -10.96780 -10.95709 -10.83213 -10.69215 -10.35509 -10.25707 -10.08828 -10.00883 -9.59577 -9.52158 -9.25810 -8.39176 -8.16478 -7.86337 -7.19725 -4.91253 1.35371 2.01580 2.45678 2.92025 3.01125 3.10748 3.64214 3.74886 3.96000 4.21551 4.59616 4.90485 4.93077 5.05824 5.10773 5.31405 5.33843 5.37574 5.52571 5.55034 5.58098 5.71114 5.75474 5.83545 5.86387 5.93073 5.98278 6.05656 6.07588 6.13625 6.23728 6.32579 6.35626 6.39657 6.56280 6.58049 6.62835 6.74284 6.90907 7.02685 7.07806 7.24275 7.38820 7.41871 7.50895 7.78548 8.13214 8.26694 8.49978 9.78291 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010296 B = 0.007507 C = 0.005637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.738246 B = 3728.998771 C = 4965.767895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.156 4.156 3 C 0.126 3.874 4 H 0.078 0.922 5 C 0.059 3.941 6 O -0.380 6.380 7 C 0.074 3.926 8 H 0.058 0.942 9 C -0.141 4.141 10 C 0.102 3.898 11 N -0.991 5.991 12 S 2.705 3.295 13 O -0.989 6.989 14 O -0.969 6.969 15 C -0.766 4.766 16 C 0.014 3.986 17 C -0.254 4.254 18 C -0.045 4.045 19 C -0.236 4.236 20 C 0.168 3.832 21 C -0.462 4.462 22 H 0.128 0.872 23 C 0.092 3.908 24 N -0.781 5.781 25 Si 0.905 3.095 26 H -0.265 1.265 27 H -0.286 1.286 28 H -0.245 1.245 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.114 0.886 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.110 0.890 45 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.923 0.089 -4.696 9.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.194 4.194 3 C 0.020 3.980 4 H 0.096 0.904 5 C -0.020 4.020 6 O -0.299 6.299 7 C 0.014 3.986 8 H 0.076 0.924 9 C -0.199 4.199 10 C -0.023 4.023 11 N -0.827 5.827 12 S 2.804 3.196 13 O -0.980 6.980 14 O -0.960 6.960 15 C -0.860 4.860 16 C -0.006 4.006 17 C -0.274 4.274 18 C -0.064 4.064 19 C -0.255 4.255 20 C 0.163 3.837 21 C -0.489 4.489 22 H 0.145 0.855 23 C -0.130 4.130 24 N -0.403 5.403 25 Si 0.731 3.269 26 H -0.191 1.191 27 H -0.213 1.213 28 H -0.168 1.168 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.125 0.875 40 H 0.100 0.900 41 H 0.132 0.868 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.128 0.872 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.396 0.057 -5.352 9.129 hybrid contribution -0.521 0.062 1.780 1.855 sum -7.916 0.119 -3.572 8.686 Atomic orbital electron populations 1.21764 0.95339 1.01937 1.01479 1.22450 0.96406 0.94366 1.06191 1.21637 0.80101 0.97559 0.98740 0.90373 1.22970 0.97713 0.85084 0.96200 1.87889 1.18995 1.28287 1.94691 1.22531 0.81214 0.97674 0.97155 0.92441 1.21711 1.00995 0.94611 1.02602 1.22157 0.98096 0.84819 0.97232 1.57713 1.14224 1.24258 1.86554 1.01066 0.72438 0.71557 0.74509 1.93497 1.74396 1.55393 1.74722 1.93480 1.32356 1.84006 1.86151 1.29999 1.23427 1.09940 1.22655 1.20401 0.91277 0.93262 0.95685 1.20529 1.11540 1.02272 0.93107 1.20867 0.93935 0.93829 0.97757 1.21396 1.08119 0.99897 0.96105 1.17120 0.85522 0.90464 0.90640 1.20284 1.24348 0.92570 1.11699 0.85490 1.26124 0.95134 0.95272 0.96499 1.69636 1.30226 1.04420 1.36026 0.86452 0.82491 0.77171 0.80818 1.19075 1.21267 1.16825 0.92281 0.92737 0.92772 0.87712 0.90359 0.88244 0.92823 0.91509 0.90577 0.92076 0.87480 0.90039 0.86786 0.88052 0.88237 0.87201 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.56 37.16 0.36 -1.42 16 2 C -0.16 -2.42 3.79 -26.73 -0.10 -2.52 16 3 C 0.13 2.06 3.17 -67.42 -0.21 1.84 16 4 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 5 C 0.06 0.83 5.85 37.31 0.22 1.05 16 6 O -0.38 -5.99 10.38 -35.23 -0.37 -6.36 16 7 C 0.07 1.15 3.40 -26.58 -0.09 1.06 16 8 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 9 C -0.14 -1.89 9.57 37.16 0.36 -1.54 16 10 C 0.10 1.90 4.52 -3.53 -0.02 1.88 16 11 N -0.99 -18.78 3.24 -106.03 -0.34 -19.12 16 12 S 2.70 58.04 4.54 -107.50 -0.49 57.56 16 13 O -0.99 -20.68 12.41 -57.17 -0.71 -21.39 16 14 O -0.97 -23.51 14.22 -57.17 -0.81 -24.32 16 15 C -0.77 -17.42 5.60 -38.87 -0.22 -17.64 16 16 C 0.01 0.28 8.38 -39.66 -0.33 -0.05 16 17 C -0.25 -5.06 10.05 -39.29 -0.39 -5.46 16 18 C -0.05 -0.93 10.02 -39.66 -0.40 -1.32 16 19 C -0.24 -5.40 7.21 -38.87 -0.28 -5.68 16 20 C 0.17 4.06 5.03 -106.82 -0.54 3.52 16 21 C -0.46 -11.50 7.32 -37.75 -0.28 -11.78 16 22 H 0.13 3.38 4.92 -52.49 -0.26 3.13 16 23 C 0.09 2.20 5.46 -17.35 -0.09 2.10 16 24 N -0.78 -18.58 13.93 55.55 0.77 -17.81 16 25 Si 0.90 19.18 24.56 -169.99 -4.17 15.01 16 26 H -0.26 -5.47 6.42 56.52 0.36 -5.11 16 27 H -0.29 -5.82 7.11 56.52 0.40 -5.42 16 28 H -0.25 -5.35 7.04 56.52 0.40 -4.96 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.55 7.06 -51.93 -0.37 0.18 16 32 H 0.10 1.70 6.40 -51.92 -0.33 1.37 16 33 H 0.08 1.35 4.76 -51.93 -0.25 1.11 16 34 H 0.10 1.15 7.15 -51.93 -0.37 0.77 16 35 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.11 2.13 6.12 -51.93 -0.32 1.81 16 40 H 0.08 1.60 8.04 -51.93 -0.42 1.19 16 41 H 0.11 2.16 7.02 -52.48 -0.37 1.79 16 42 H 0.10 1.72 8.06 -52.48 -0.42 1.29 16 43 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.11 2.46 4.73 -52.49 -0.25 2.21 16 45 H 0.29 6.26 8.30 -40.82 -0.34 5.93 16 LS Contribution 348.48 15.07 5.25 5.25 Total: -1.00 -27.92 348.48 -9.22 -37.15 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -6.33 Total: 9.97 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: -2.02 Total: -35.94 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.43 Total: -36.92 kcal Atomic # 8 Polarization: -50.18 SS G_CDS: -1.89 Total: -52.06 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.17 Total: 15.01 kcal Atomic # 16 Polarization: 58.04 SS G_CDS: -0.49 Total: 57.56 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.92 -9.22 -37.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601304119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.169 kcal (2) G-P(sol) polarization free energy of solvation -27.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds