Wall clock time and date at job start Tue Mar 31 2020 22:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47044 * 2 1 4 4 H 1.09001 * 109.68183 * 55.51614 * 3 2 1 5 5 C 1.53297 * 109.68306 * 176.07308 * 3 2 1 6 6 O 1.42966 * 109.22086 * 67.42169 * 5 3 2 7 7 C 1.42959 * 114.16581 * 62.58228 * 6 5 3 8 8 H 1.09001 * 109.55788 * 57.36427 * 7 6 5 9 9 C 1.53006 * 109.51165 * 177.49621 * 7 6 5 10 10 C 1.53296 * 109.22311 * 297.41778 * 7 6 5 11 11 N 1.47154 * 108.38551 * 52.30646 * 10 7 6 12 12 S 1.65597 * 120.98448 * 129.48754 * 11 10 7 13 13 O 1.42095 * 106.40245 * 203.06418 * 12 11 10 14 14 O 1.42103 * 106.40261 * 335.98328 * 12 11 10 15 15 C 1.76195 * 107.21963 * 89.52416 * 12 11 10 16 16 C 1.37639 * 120.12949 * 114.53938 * 15 12 11 17 17 C 1.38620 * 120.24879 * 179.97438 * 16 15 12 18 18 C 1.38658 * 120.49987 * 0.02562 * 17 16 15 19 19 C 1.37596 * 120.24833 * 0.02598 * 18 17 16 20 20 C 1.40701 * 120.12827 * 294.26260 * 15 12 11 21 21 C 1.41401 * 120.24425 * 359.97438 * 20 15 12 22 22 H 1.08001 * 119.99740 * 329.30887 * 21 20 15 23 23 C 1.39943 * 120.00241 * 149.31193 * 21 20 15 24 24 N 1.30822 * 119.99913 * 349.06640 * 23 21 20 25 25 Si 1.86796 * 120.00000 * 169.06992 * 23 21 20 26 26 H 1.48510 * 109.47237 * 59.99842 * 25 23 21 27 27 H 1.48502 * 109.47321 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47205 * 299.99979 * 25 23 21 29 29 H 1.09003 * 109.47425 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47360 * 299.99758 * 1 2 3 31 31 H 1.08997 * 109.47603 * 60.00101 * 1 2 3 32 32 H 1.09000 * 109.46947 * 239.99900 * 2 1 3 33 33 H 1.09002 * 109.46913 * 119.99813 * 2 1 3 34 34 H 1.09002 * 109.51245 * 187.34592 * 5 3 2 35 35 H 1.08995 * 109.50955 * 307.49843 * 5 3 2 36 36 H 1.09002 * 109.46983 * 179.74615 * 9 7 6 37 37 H 1.08996 * 109.46964 * 299.74389 * 9 7 6 38 38 H 1.09000 * 109.47044 * 59.74741 * 9 7 6 39 39 H 1.09008 * 109.68198 * 172.02736 * 10 7 6 40 40 H 1.09003 * 109.68097 * 292.57814 * 10 7 6 41 41 H 1.08001 * 119.87467 * 359.97438 * 16 15 12 42 42 H 1.07994 * 119.74553 * 180.02562 * 17 16 15 43 43 H 1.08001 * 119.87529 * 179.97438 * 18 17 16 44 44 H 1.08009 * 120.12485 * 179.97438 * 19 18 17 45 45 H 0.97001 * 119.99751 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6145 1.9823 0.8460 5 6 3.5697 1.4493 0.0988 6 8 4.1214 0.9047 -1.1024 7 6 3.8189 1.6579 -2.2793 8 1 4.1717 2.6820 -2.1578 9 6 4.5092 1.0192 -3.4862 10 6 2.3019 1.6618 -2.4999 11 7 1.6531 2.1050 -1.2557 12 16 0.5206 3.3131 -1.2684 13 8 0.5018 3.8593 0.0432 14 8 0.7759 4.0903 -2.4304 15 6 -1.0501 2.5532 -1.5134 16 6 -2.0021 2.5988 -0.5203 17 6 -3.2388 2.0023 -0.7106 18 6 -3.5314 1.3532 -1.9004 19 6 -2.5946 1.2942 -2.9064 20 6 -1.3381 1.9023 -2.7270 21 6 -0.3703 1.8545 -3.7568 22 1 0.3409 2.6598 -3.8672 23 6 -0.3338 0.7638 -4.6328 24 7 -1.0438 -0.3048 -4.3768 25 14 0.7285 0.8337 -6.1677 26 1 2.1484 1.0289 -5.7786 27 1 0.5929 -0.4383 -6.9220 28 1 0.2895 1.9659 -7.0224 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9215 2.4726 0.2299 35 1 3.8822 0.8443 0.9499 36 1 4.2744 1.5913 -4.3838 37 1 5.5877 1.0168 -3.3287 38 1 4.1571 -0.0054 -3.6060 39 1 2.0504 2.3471 -3.3094 40 1 1.9650 0.6561 -2.7517 41 1 -1.7847 3.1014 0.4106 42 1 -3.9799 2.0434 0.0738 43 1 -4.4981 0.8914 -2.0377 44 1 -2.8245 0.7877 -3.8323 45 1 -1.0188 -1.0607 -4.9843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601304123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:43 Heat of formation + Delta-G solvation = -104.431897 kcal Electronic energy + Delta-G solvation = -30638.640008 eV Core-core repulsion = 26747.661836 eV Total energy + Delta-G solvation = -3890.978173 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -39.37054 -37.70192 -36.48895 -35.14840 -34.95914 -33.96827 -33.11147 -30.98479 -30.28965 -29.57512 -27.85322 -25.83497 -25.21480 -23.27671 -21.91066 -21.52917 -21.18798 -19.71391 -18.11605 -17.66763 -17.33419 -16.33660 -16.10408 -15.49936 -15.32483 -14.91762 -14.49487 -14.45637 -14.27648 -13.89610 -13.44291 -13.37203 -13.15663 -12.78558 -12.53676 -12.22968 -12.03817 -11.97244 -11.77802 -11.56635 -11.47785 -11.38982 -11.32779 -11.23386 -11.22046 -11.05871 -10.68701 -10.64932 -10.60052 -10.52529 -10.21661 -10.03168 -9.91096 -9.68696 -9.47910 -9.21058 -8.24147 -7.97148 -7.61210 -7.07958 -4.81945 1.41955 2.30356 2.69435 2.92209 2.95141 3.06253 3.71023 3.73384 3.96677 4.35251 4.68062 4.94254 5.03826 5.20026 5.25383 5.33348 5.38810 5.53354 5.55332 5.65681 5.77346 5.79598 5.93174 5.93889 6.00949 6.02519 6.13115 6.20540 6.26895 6.30024 6.37016 6.50475 6.54456 6.59461 6.75466 6.84792 6.92577 7.00159 7.12829 7.22580 7.30157 7.42334 7.48152 7.65424 7.77454 7.90246 8.30321 8.47409 8.61333 9.85118 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009908 B = 0.008295 C = 0.005818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.409490 B = 3374.831736 C = 4811.382137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.122 4.122 3 C 0.117 3.883 4 H 0.103 0.897 5 C 0.060 3.940 6 O -0.376 6.376 7 C 0.072 3.928 8 H 0.058 0.942 9 C -0.143 4.143 10 C 0.101 3.899 11 N -0.988 5.988 12 S 2.700 3.300 13 O -0.995 6.995 14 O -0.974 6.974 15 C -0.770 4.770 16 C -0.001 4.001 17 C -0.244 4.244 18 C -0.076 4.076 19 C -0.155 4.155 20 C 0.195 3.805 21 C -0.479 4.479 22 H 0.113 0.887 23 C 0.083 3.917 24 N -0.776 5.776 25 Si 0.900 3.100 26 H -0.252 1.252 27 H -0.276 1.276 28 H -0.258 1.258 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.122 0.878 45 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.837 -1.762 2.725 7.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.161 4.161 3 C 0.010 3.990 4 H 0.121 0.879 5 C -0.018 4.018 6 O -0.295 6.295 7 C 0.013 3.987 8 H 0.076 0.924 9 C -0.201 4.201 10 C -0.025 4.025 11 N -0.824 5.824 12 S 2.801 3.199 13 O -0.986 6.986 14 O -0.965 6.965 15 C -0.865 4.865 16 C -0.021 4.021 17 C -0.265 4.265 18 C -0.095 4.095 19 C -0.175 4.175 20 C 0.191 3.809 21 C -0.507 4.507 22 H 0.130 0.870 23 C -0.138 4.138 24 N -0.399 5.399 25 Si 0.723 3.277 26 H -0.176 1.176 27 H -0.200 1.200 28 H -0.182 1.182 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.124 0.876 40 H 0.099 0.901 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.140 0.860 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.110 -1.255 2.732 7.719 hybrid contribution -0.556 -0.629 -0.720 1.106 sum 6.554 -1.883 2.012 7.110 Atomic orbital electron populations 1.22070 0.94694 1.01834 1.03910 1.21725 0.97058 0.95337 1.01989 1.21671 0.95503 0.94884 0.86895 0.87867 1.22877 0.92262 0.98939 0.87764 1.87881 1.74494 1.52258 1.14874 1.22536 0.95068 0.95043 0.86069 0.92352 1.21740 1.00437 1.01948 0.95975 1.22267 0.90912 1.02982 0.86318 1.57765 1.56544 1.55903 1.12163 1.01090 0.73734 0.72836 0.72251 1.93425 1.87876 1.77124 1.40162 1.93463 1.85511 1.67400 1.50077 1.29787 1.20515 1.32580 1.03622 1.20194 0.92799 0.93755 0.95372 1.20475 0.97903 1.09175 0.98913 1.20899 0.97634 0.96889 0.94114 1.21482 0.93162 1.03694 0.99131 1.16955 0.91373 0.84487 0.88105 1.20448 1.14674 1.05284 1.10278 0.86956 1.25932 0.95232 0.94254 0.98382 1.69775 1.32094 1.03334 1.34711 0.86459 0.81404 0.78960 0.80872 1.17597 1.20031 1.18245 0.93508 0.93618 0.88985 0.91054 0.92132 0.93022 0.88246 0.90819 0.91969 0.91609 0.87642 0.90076 0.87651 0.88826 0.88946 0.86012 0.90193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 9.47 37.16 0.35 -2.69 16 2 C -0.12 -1.93 5.35 -26.73 -0.14 -2.07 16 3 C 0.12 1.89 2.69 -67.42 -0.18 1.71 16 4 H 0.10 1.66 6.94 -51.93 -0.36 1.30 16 5 C 0.06 0.83 6.36 37.31 0.24 1.07 16 6 O -0.38 -5.74 10.10 -35.23 -0.36 -6.09 16 7 C 0.07 1.10 3.40 -26.57 -0.09 1.01 16 8 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 9 C -0.14 -1.88 9.57 37.16 0.36 -1.52 16 10 C 0.10 1.80 3.91 -3.53 -0.01 1.79 16 11 N -0.99 -18.40 2.51 -106.02 -0.27 -18.66 16 12 S 2.70 58.56 5.21 -107.50 -0.56 58.00 16 13 O -0.99 -22.24 15.58 -57.17 -0.89 -23.13 16 14 O -0.97 -23.09 14.51 -57.17 -0.83 -23.92 16 15 C -0.77 -17.60 3.71 -38.87 -0.14 -17.74 16 16 C 0.00 -0.03 9.14 -39.66 -0.36 -0.39 16 17 C -0.24 -5.15 10.05 -39.29 -0.39 -5.55 16 18 C -0.08 -1.65 10.02 -39.66 -0.40 -2.05 16 19 C -0.15 -3.66 8.65 -38.87 -0.34 -4.00 16 20 C 0.20 4.69 4.75 -106.82 -0.51 4.19 16 21 C -0.48 -11.21 6.29 -37.74 -0.24 -11.44 16 22 H 0.11 2.66 3.91 -52.49 -0.21 2.45 16 23 C 0.08 1.83 5.24 -17.34 -0.09 1.74 16 24 N -0.78 -17.42 10.97 55.55 0.61 -16.81 16 25 Si 0.90 16.69 29.57 -169.99 -5.03 11.66 16 26 H -0.25 -4.34 7.11 56.52 0.40 -3.93 16 27 H -0.28 -4.99 7.11 56.52 0.40 -4.59 16 28 H -0.26 -4.92 7.11 56.52 0.40 -4.51 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.93 4.11 -51.93 -0.21 1.72 16 32 H 0.07 1.21 7.14 -51.93 -0.37 0.84 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.11 2.00 5.22 -51.92 -0.27 1.73 16 40 H 0.08 1.51 7.46 -51.93 -0.39 1.13 16 41 H 0.11 2.17 7.32 -52.49 -0.38 1.78 16 42 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 43 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.12 2.93 6.36 -52.48 -0.33 2.59 16 45 H 0.29 5.92 8.30 -40.82 -0.34 5.58 16 LS Contribution 354.51 15.07 5.34 5.34 Total: -1.00 -26.82 354.51 -10.24 -37.06 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -6.31 Total: 12.50 kcal Atomic # 6 Polarization: -34.00 SS G_CDS: -1.96 Total: -35.95 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.34 Total: -35.48 kcal Atomic # 8 Polarization: -51.06 SS G_CDS: -2.08 Total: -53.14 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -5.03 Total: 11.66 kcal Atomic # 16 Polarization: 58.56 SS G_CDS: -0.56 Total: 58.00 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -26.82 -10.24 -37.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601304123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.371 kcal (2) G-P(sol) polarization free energy of solvation -26.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds