Wall clock time and date at job start Tue Mar 31 2020 22:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47044 * 2 1 4 4 H 1.09001 * 109.68183 * 55.51614 * 3 2 1 5 5 C 1.53297 * 109.68306 * 176.07308 * 3 2 1 6 6 O 1.42966 * 109.22086 * 67.42169 * 5 3 2 7 7 C 1.42959 * 114.16581 * 62.58228 * 6 5 3 8 8 H 1.09001 * 109.55788 * 57.36427 * 7 6 5 9 9 C 1.53006 * 109.51165 * 177.49621 * 7 6 5 10 10 C 1.53296 * 109.22311 * 297.41778 * 7 6 5 11 11 N 1.47154 * 108.38551 * 52.30646 * 10 7 6 12 12 S 1.65597 * 120.98448 * 129.48754 * 11 10 7 13 13 O 1.42095 * 106.40245 * 203.06418 * 12 11 10 14 14 O 1.42103 * 106.40261 * 335.98328 * 12 11 10 15 15 C 1.76195 * 107.21963 * 89.52416 * 12 11 10 16 16 C 1.37639 * 120.12949 * 114.53938 * 15 12 11 17 17 C 1.38620 * 120.24879 * 179.97438 * 16 15 12 18 18 C 1.38658 * 120.49987 * 0.02562 * 17 16 15 19 19 C 1.37596 * 120.24833 * 0.02598 * 18 17 16 20 20 C 1.40701 * 120.12827 * 294.26260 * 15 12 11 21 21 C 1.41401 * 120.24425 * 359.97438 * 20 15 12 22 22 H 1.08001 * 119.99740 * 329.30887 * 21 20 15 23 23 C 1.39943 * 120.00241 * 149.31193 * 21 20 15 24 24 N 1.30822 * 119.99913 * 349.06640 * 23 21 20 25 25 Si 1.86796 * 120.00000 * 169.06992 * 23 21 20 26 26 H 1.48510 * 109.47237 * 59.99842 * 25 23 21 27 27 H 1.48502 * 109.47321 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47205 * 299.99979 * 25 23 21 29 29 H 1.09003 * 109.47425 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47360 * 299.99758 * 1 2 3 31 31 H 1.08997 * 109.47603 * 60.00101 * 1 2 3 32 32 H 1.09000 * 109.46947 * 239.99900 * 2 1 3 33 33 H 1.09002 * 109.46913 * 119.99813 * 2 1 3 34 34 H 1.09002 * 109.51245 * 187.34592 * 5 3 2 35 35 H 1.08995 * 109.50955 * 307.49843 * 5 3 2 36 36 H 1.09002 * 109.46983 * 179.74615 * 9 7 6 37 37 H 1.08996 * 109.46964 * 299.74389 * 9 7 6 38 38 H 1.09000 * 109.47044 * 59.74741 * 9 7 6 39 39 H 1.09008 * 109.68198 * 172.02736 * 10 7 6 40 40 H 1.09003 * 109.68097 * 292.57814 * 10 7 6 41 41 H 1.08001 * 119.87467 * 359.97438 * 16 15 12 42 42 H 1.07994 * 119.74553 * 180.02562 * 17 16 15 43 43 H 1.08001 * 119.87529 * 179.97438 * 18 17 16 44 44 H 1.08009 * 120.12485 * 179.97438 * 19 18 17 45 45 H 0.97001 * 119.99751 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6145 1.9823 0.8460 5 6 3.5697 1.4493 0.0988 6 8 4.1214 0.9047 -1.1024 7 6 3.8189 1.6579 -2.2793 8 1 4.1717 2.6820 -2.1578 9 6 4.5092 1.0192 -3.4862 10 6 2.3019 1.6618 -2.4999 11 7 1.6531 2.1050 -1.2557 12 16 0.5206 3.3131 -1.2684 13 8 0.5018 3.8593 0.0432 14 8 0.7759 4.0903 -2.4304 15 6 -1.0501 2.5532 -1.5134 16 6 -2.0021 2.5988 -0.5203 17 6 -3.2388 2.0023 -0.7106 18 6 -3.5314 1.3532 -1.9004 19 6 -2.5946 1.2942 -2.9064 20 6 -1.3381 1.9023 -2.7270 21 6 -0.3703 1.8545 -3.7568 22 1 0.3409 2.6598 -3.8672 23 6 -0.3338 0.7638 -4.6328 24 7 -1.0438 -0.3048 -4.3768 25 14 0.7285 0.8337 -6.1677 26 1 2.1484 1.0289 -5.7786 27 1 0.5929 -0.4383 -6.9220 28 1 0.2895 1.9659 -7.0224 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9215 2.4726 0.2299 35 1 3.8822 0.8443 0.9499 36 1 4.2744 1.5913 -4.3838 37 1 5.5877 1.0168 -3.3287 38 1 4.1571 -0.0054 -3.6060 39 1 2.0504 2.3471 -3.3094 40 1 1.9650 0.6561 -2.7517 41 1 -1.7847 3.1014 0.4106 42 1 -3.9799 2.0434 0.0738 43 1 -4.4981 0.8914 -2.0377 44 1 -2.8245 0.7877 -3.8323 45 1 -1.0188 -1.0607 -4.9843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601304123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:42 Heat of formation + Delta-G solvation = -119.863228 kcal Electronic energy + Delta-G solvation = -30639.309161 eV Core-core repulsion = 26747.661836 eV Total energy + Delta-G solvation = -3891.647325 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.62188 -39.41385 -38.23651 -36.74162 -36.45008 -35.65200 -34.40141 -32.31265 -31.98451 -31.29711 -29.07992 -27.45599 -26.64294 -24.53452 -23.47495 -22.93645 -22.90960 -21.10583 -19.68280 -19.32572 -18.94350 -17.78989 -17.58647 -17.11117 -16.79786 -16.27747 -16.04176 -15.82503 -15.64567 -15.31147 -15.09203 -14.94419 -14.66223 -14.42160 -13.87321 -13.76511 -13.56683 -13.17335 -13.11050 -13.05406 -13.03523 -12.93125 -12.90638 -12.80270 -12.70657 -12.57379 -12.31884 -12.15608 -12.10590 -11.79521 -11.63230 -11.60119 -11.25010 -11.13062 -11.10738 -10.83496 -9.79371 -9.53419 -9.36344 -8.74685 -6.57691 -0.24139 0.56974 1.01474 1.39320 1.48170 1.51836 2.16082 2.17679 2.66168 2.84182 2.97148 3.47844 3.57933 3.79325 3.88646 4.07595 4.12141 4.18678 4.32247 4.35217 4.38593 4.51515 4.58798 4.61424 4.71685 4.72373 4.78640 4.85791 4.92286 4.99053 5.02184 5.09431 5.13390 5.19939 5.22379 5.31069 5.34600 5.50071 5.56606 5.63263 5.74254 5.80590 5.90061 6.03593 6.16600 6.26451 6.54557 6.74529 6.86906 8.20312 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009908 B = 0.008295 C = 0.005818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.409490 B = 3374.831736 C = 4811.382137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.114 4.114 3 C 0.109 3.891 4 H 0.104 0.896 5 C 0.060 3.940 6 O -0.379 6.379 7 C 0.074 3.926 8 H 0.065 0.935 9 C -0.141 4.141 10 C 0.101 3.899 11 N -0.984 5.984 12 S 2.710 3.290 13 O -1.005 7.005 14 O -1.000 7.000 15 C -0.780 4.780 16 C -0.011 4.011 17 C -0.246 4.246 18 C -0.076 4.076 19 C -0.181 4.181 20 C 0.175 3.825 21 C -0.496 4.496 22 H 0.105 0.895 23 C 0.058 3.942 24 N -0.797 5.797 25 Si 0.944 3.056 26 H -0.231 1.231 27 H -0.265 1.265 28 H -0.267 1.267 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.134 0.866 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.116 0.884 42 H 0.122 0.878 43 H 0.117 0.883 44 H 0.110 0.890 45 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.404 -2.469 3.526 9.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.152 4.152 3 C 0.003 3.997 4 H 0.122 0.878 5 C -0.018 4.018 6 O -0.297 6.297 7 C 0.015 3.985 8 H 0.083 0.917 9 C -0.199 4.199 10 C -0.024 4.024 11 N -0.821 5.821 12 S 2.810 3.190 13 O -0.996 6.996 14 O -0.991 6.991 15 C -0.874 4.874 16 C -0.031 4.031 17 C -0.266 4.266 18 C -0.095 4.095 19 C -0.201 4.201 20 C 0.171 3.829 21 C -0.524 4.524 22 H 0.122 0.878 23 C -0.162 4.162 24 N -0.421 5.421 25 Si 0.764 3.236 26 H -0.153 1.153 27 H -0.190 1.190 28 H -0.191 1.191 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.152 0.848 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.134 0.866 42 H 0.140 0.860 43 H 0.135 0.865 44 H 0.128 0.872 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.662 -1.963 3.550 9.565 hybrid contribution -1.115 -0.424 -0.881 1.483 sum 7.546 -2.387 2.669 8.353 Atomic orbital electron populations 1.22028 0.96558 1.01334 1.02606 1.21672 0.95262 0.95406 1.02908 1.21977 0.97497 0.94629 0.85614 0.87801 1.23061 0.90100 1.00324 0.88323 1.87888 1.74269 1.52476 1.15113 1.22563 0.92970 0.95842 0.87159 0.91748 1.21762 1.01462 1.01542 0.95135 1.22279 0.92876 1.01615 0.85660 1.57552 1.55509 1.55582 1.13498 1.00660 0.73714 0.73139 0.71506 1.93398 1.88088 1.77770 1.40306 1.93421 1.85835 1.68758 1.51058 1.30004 1.21613 1.32241 1.03576 1.20448 0.93117 0.93939 0.95617 1.20805 0.98193 1.08248 0.99356 1.21191 0.98238 0.96338 0.93743 1.21503 0.93955 1.05099 0.99551 1.17196 0.91793 0.85106 0.88831 1.20493 1.14868 1.05747 1.11261 0.87763 1.26507 0.96008 0.93481 1.00189 1.69807 1.32862 1.03812 1.35602 0.85794 0.81264 0.78896 0.77678 1.15337 1.18964 1.19137 0.93601 0.93240 0.91907 0.92285 0.88861 0.92248 0.84818 0.90316 0.89916 0.91944 0.89183 0.91363 0.86609 0.85973 0.86497 0.87236 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.00 9.47 71.98 0.68 -5.31 16 2 C -0.11 -3.41 5.35 30.59 0.16 -3.24 16 3 C 0.11 3.33 2.69 44.96 0.12 3.45 16 4 H 0.10 3.17 6.94 -2.39 -0.02 3.16 16 5 C 0.06 1.49 6.36 72.08 0.46 1.94 16 6 O -0.38 -10.53 10.10 -148.98 -1.50 -12.04 16 7 C 0.07 2.14 3.40 30.70 0.10 2.24 16 8 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 9 C -0.14 -3.39 9.57 71.98 0.69 -2.70 16 10 C 0.10 3.59 3.91 86.35 0.34 3.93 16 11 N -0.98 -36.29 2.51 -489.35 -1.23 -37.52 16 12 S 2.71 118.71 5.21 -56.49 -0.29 118.42 16 13 O -1.00 -44.74 15.58 -128.00 -1.99 -46.73 16 14 O -1.00 -48.51 14.51 -128.00 -1.86 -50.37 16 15 C -0.78 -36.25 3.71 22.73 0.08 -36.16 16 16 C -0.01 -0.50 9.14 22.22 0.20 -0.29 16 17 C -0.25 -10.16 10.05 22.46 0.23 -9.93 16 18 C -0.08 -3.29 10.02 22.22 0.22 -3.07 16 19 C -0.18 -8.78 8.65 22.73 0.20 -8.58 16 20 C 0.18 8.65 4.75 -21.29 -0.10 8.55 16 21 C -0.50 -23.88 6.29 23.46 0.15 -23.73 16 22 H 0.10 5.11 3.91 -2.91 -0.01 5.10 16 23 C 0.06 2.57 5.24 85.26 0.45 3.02 16 24 N -0.80 -36.52 10.97 21.83 0.24 -36.28 16 25 Si 0.94 33.88 29.57 68.60 2.03 35.91 16 26 H -0.23 -7.41 7.11 99.48 0.71 -6.70 16 27 H -0.27 -9.04 7.11 99.48 0.71 -8.33 16 28 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 29 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 2.66 4.11 -2.39 -0.01 2.65 16 32 H 0.06 1.93 7.14 -2.39 -0.02 1.91 16 33 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.09 3.47 5.22 -2.38 -0.01 3.45 16 40 H 0.07 2.57 7.46 -2.39 -0.02 2.55 16 41 H 0.12 4.71 7.32 -2.91 -0.02 4.69 16 42 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 43 H 0.12 4.34 8.06 -2.91 -0.02 4.31 16 44 H 0.11 5.46 6.36 -2.91 -0.02 5.45 16 45 H 0.29 12.24 8.30 -92.71 -0.77 11.47 16 Total: -1.00 -58.29 354.51 0.38 -57.91 By element: Atomic # 1 Polarization: 39.59 SS G_CDS: 1.01 Total: 40.60 kcal Atomic # 6 Polarization: -73.88 SS G_CDS: 3.98 Total: -69.90 kcal Atomic # 7 Polarization: -72.81 SS G_CDS: -0.99 Total: -73.80 kcal Atomic # 8 Polarization: -103.78 SS G_CDS: -5.36 Total: -109.14 kcal Atomic # 14 Polarization: 33.88 SS G_CDS: 2.03 Total: 35.91 kcal Atomic # 16 Polarization: 118.71 SS G_CDS: -0.29 Total: 118.42 kcal Total: -58.29 0.38 -57.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601304123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.954 kcal (2) G-P(sol) polarization free energy of solvation -58.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds