Wall clock time and date at job start Tue Mar 31 2020 22:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46728 * 2 1 4 4 H 1.08999 * 109.67812 * 300.59364 * 3 2 1 5 5 C 1.53292 * 109.68678 * 61.11541 * 3 2 1 6 6 O 1.42953 * 109.22495 * 172.06279 * 5 3 2 7 7 C 1.42960 * 114.16775 * 297.41881 * 6 5 3 8 8 H 1.09000 * 109.51295 * 302.60430 * 7 6 5 9 9 C 1.53010 * 109.51310 * 182.50741 * 7 6 5 10 10 C 1.53287 * 109.26779 * 62.55530 * 7 6 5 11 11 N 1.47161 * 109.71113 * 180.02562 * 3 2 1 12 12 S 1.65596 * 120.98140 * 9.73431 * 11 3 2 13 13 O 1.42096 * 106.40476 * 42.07116 * 12 11 3 14 14 O 1.42099 * 106.40086 * 174.99349 * 12 11 3 15 15 C 1.76205 * 107.21692 * 288.53436 * 12 11 3 16 16 C 1.37634 * 120.12828 * 113.10071 * 15 12 11 17 17 C 1.38616 * 120.24316 * 179.72179 * 16 15 12 18 18 C 1.38654 * 120.50381 * 0.55599 * 17 16 15 19 19 C 1.37593 * 120.24739 * 359.72483 * 18 17 16 20 20 C 1.40697 * 120.12328 * 293.37439 * 15 12 11 21 21 C 1.41390 * 120.24961 * 359.97438 * 20 15 12 22 22 H 1.08005 * 119.99774 * 28.49107 * 21 20 15 23 23 C 1.39951 * 120.00561 * 208.48476 * 21 20 15 24 24 N 1.30826 * 119.99406 * 13.13250 * 23 21 20 25 25 Si 1.86800 * 120.00206 * 193.12962 * 23 21 20 26 26 H 1.48496 * 109.47078 * 89.99965 * 25 23 21 27 27 H 1.48502 * 109.46838 * 209.99923 * 25 23 21 28 28 H 1.48502 * 109.46975 * 330.00059 * 25 23 21 29 29 H 1.08997 * 109.47009 * 61.67008 * 1 2 3 30 30 H 1.08998 * 109.46269 * 181.66263 * 1 2 3 31 31 H 1.08996 * 109.46892 * 301.66709 * 1 2 3 32 32 H 1.09001 * 109.47508 * 240.00015 * 2 1 3 33 33 H 1.08996 * 109.47356 * 119.99169 * 2 1 3 34 34 H 1.08999 * 109.51011 * 52.13232 * 5 3 2 35 35 H 1.08998 * 109.51146 * 291.98723 * 5 3 2 36 36 H 1.08991 * 109.47071 * 60.09978 * 9 7 6 37 37 H 1.08999 * 109.46737 * 300.09852 * 9 7 6 38 38 H 1.08997 * 109.46953 * 180.10418 * 9 7 6 39 39 H 1.09000 * 109.68359 * 67.44487 * 10 7 6 40 40 H 1.08991 * 109.68494 * 188.00060 * 10 7 6 41 41 H 1.07995 * 119.87717 * 359.97438 * 16 15 12 42 42 H 1.08010 * 119.74422 * 180.25988 * 17 16 15 43 43 H 1.08004 * 119.87516 * 179.74677 * 18 17 16 44 44 H 1.08005 * 120.12573 * 180.02562 * 19 18 17 45 45 H 0.97000 * 119.99510 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6698 1.9627 -0.8835 5 6 1.5547 2.1618 1.2638 6 8 2.1842 3.4425 1.3475 7 6 3.6074 3.3882 1.4708 8 1 3.8747 2.8020 2.3500 9 6 4.1625 4.8069 1.6144 10 6 4.1989 2.7314 0.2184 11 7 3.5115 1.4488 -0.0006 12 16 4.3698 0.0532 -0.2412 13 8 3.7114 -0.6474 -1.2875 14 8 5.7390 0.4291 -0.2990 15 6 4.1844 -0.9297 1.2094 16 6 3.4921 -2.1181 1.1548 17 6 3.3497 -2.8960 2.2932 18 6 3.8916 -2.4824 3.5006 19 6 4.5827 -1.2953 3.5797 20 6 4.7386 -0.5000 2.4291 21 6 5.4473 0.7215 2.4984 22 1 5.2043 1.5260 1.8200 23 6 6.4635 0.8882 3.4460 24 7 6.9346 -0.1491 4.0892 25 14 7.1473 2.5917 3.7925 26 1 6.3659 3.2261 4.8843 27 1 8.5702 2.4799 4.2025 28 1 7.0494 3.4232 2.5660 29 1 -0.3633 0.4877 -0.9046 30 1 -0.3632 -1.0273 0.0298 31 1 -0.3633 0.5395 0.8746 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.8144 1.5703 2.1417 35 1 0.4733 2.2900 1.2172 36 1 3.7402 5.2738 2.5041 37 1 3.8949 5.3925 0.7349 38 1 5.2478 4.7648 1.7065 39 1 4.0467 3.3811 -0.6436 40 1 5.2650 2.5574 0.3638 41 1 3.0618 -2.4475 0.2207 42 1 2.8084 -3.8292 2.2403 43 1 3.7711 -3.0946 4.3822 44 1 5.0043 -0.9752 4.5211 45 1 7.6387 -0.0335 4.7463 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601304124.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:47 Heat of formation + Delta-G solvation = -95.177816 kcal Electronic energy + Delta-G solvation = -30566.608177 eV Core-core repulsion = 26676.031292 eV Total energy + Delta-G solvation = -3890.576886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -39.33739 -37.66752 -36.72911 -35.19927 -34.88829 -34.02688 -33.45594 -31.21570 -30.29351 -29.62713 -27.31352 -25.95282 -25.37366 -23.66078 -21.81344 -21.36732 -21.06677 -20.46634 -18.11035 -17.77139 -17.01210 -16.44635 -15.97471 -15.70884 -15.39934 -14.89143 -14.61110 -14.41787 -14.29590 -14.11156 -13.38872 -13.36364 -13.20503 -12.83672 -12.77862 -12.27227 -12.23929 -12.17731 -11.95110 -11.60569 -11.47767 -11.38893 -11.28224 -11.20398 -11.16981 -11.02630 -10.99413 -10.83172 -10.68188 -10.54325 -10.24662 -9.97608 -9.83497 -9.60963 -9.48430 -9.26535 -8.29157 -8.01882 -7.64834 -7.09767 -4.81630 1.40408 2.28306 2.66284 2.90384 2.93462 3.04375 3.67922 3.69996 4.00595 4.34135 4.63020 4.93051 5.00527 5.11231 5.27303 5.32716 5.34267 5.47402 5.57496 5.59555 5.62779 5.72341 5.84842 5.86889 5.93277 5.97602 5.99100 6.08386 6.17077 6.19861 6.25464 6.34456 6.36069 6.48314 6.52840 6.67753 6.75314 6.88741 6.98337 7.13221 7.25773 7.44330 7.47647 7.59494 7.75438 7.84214 8.22527 8.43965 8.59030 9.83992 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009899 B = 0.008149 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.846893 B = 3435.374983 C = 4840.001354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.202 4.202 3 C 0.136 3.864 4 H 0.076 0.924 5 C 0.053 3.947 6 O -0.380 6.380 7 C 0.065 3.935 8 H 0.083 0.917 9 C -0.146 4.146 10 C 0.091 3.909 11 N -1.000 6.000 12 S 2.699 3.301 13 O -0.992 6.992 14 O -0.963 6.963 15 C -0.774 4.774 16 C -0.002 4.002 17 C -0.248 4.248 18 C -0.076 4.076 19 C -0.157 4.157 20 C 0.188 3.812 21 C -0.455 4.455 22 H 0.095 0.905 23 C 0.083 3.917 24 N -0.773 5.773 25 Si 0.901 3.099 26 H -0.261 1.261 27 H -0.271 1.271 28 H -0.249 1.249 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.123 0.877 45 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.087 5.775 -1.549 9.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.240 4.240 3 C 0.029 3.971 4 H 0.094 0.906 5 C -0.025 4.025 6 O -0.299 6.299 7 C 0.006 3.994 8 H 0.101 0.899 9 C -0.204 4.204 10 C -0.035 4.035 11 N -0.836 5.836 12 S 2.799 3.201 13 O -0.983 6.983 14 O -0.954 6.954 15 C -0.869 4.869 16 C -0.022 4.022 17 C -0.269 4.269 18 C -0.095 4.095 19 C -0.176 4.176 20 C 0.183 3.817 21 C -0.483 4.483 22 H 0.112 0.888 23 C -0.139 4.139 24 N -0.396 5.396 25 Si 0.724 3.276 26 H -0.186 1.186 27 H -0.196 1.196 28 H -0.173 1.173 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.137 0.863 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.116 0.884 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.141 0.859 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.491 5.709 -2.201 8.920 hybrid contribution 0.310 0.065 1.057 1.104 sum -6.181 5.774 -1.143 8.535 Atomic orbital electron populations 1.21618 0.94562 1.01972 1.01418 1.22894 0.98049 0.95696 1.07377 1.21468 0.79478 0.97331 0.98781 0.90595 1.23029 0.97213 0.85020 0.97209 1.87847 1.19414 1.28211 1.94451 1.22637 0.81228 0.97440 0.98116 0.89870 1.21779 1.01031 0.94877 1.02694 1.22128 0.98595 0.84710 0.98035 1.58041 1.14250 1.22246 1.89102 1.01217 0.72382 0.72079 0.74389 1.93367 1.75850 1.73351 1.55713 1.93504 1.31849 1.82417 1.87582 1.29875 1.27122 1.13176 1.16751 1.20228 0.92880 0.92011 0.97050 1.20487 1.10738 1.01599 0.94043 1.20896 0.96394 0.96027 0.96216 1.21479 1.01279 0.95816 0.99069 1.16974 0.85060 0.90915 0.88711 1.20117 1.13725 0.99681 1.14783 0.88751 1.25918 0.95454 0.99012 0.93516 1.69784 1.20337 1.31272 1.18177 0.86385 0.78996 0.81731 0.80507 1.18572 1.19586 1.17258 0.92753 0.92239 0.92781 0.86257 0.89076 0.92040 0.88445 0.91690 0.91893 0.90801 0.91299 0.87244 0.87402 0.88734 0.88848 0.85932 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.64 37.16 0.36 -1.34 16 2 C -0.20 -3.24 4.00 -26.73 -0.11 -3.34 16 3 C 0.14 2.18 3.17 -67.42 -0.21 1.97 16 4 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 5 C 0.05 0.81 5.72 37.31 0.21 1.02 16 6 O -0.38 -6.13 10.38 -35.23 -0.37 -6.49 16 7 C 0.06 1.05 3.16 -26.58 -0.08 0.97 16 8 H 0.08 1.50 6.53 -51.93 -0.34 1.16 16 9 C -0.15 -1.95 9.57 37.16 0.36 -1.60 16 10 C 0.09 1.57 4.84 -3.53 -0.02 1.55 16 11 N -1.00 -18.63 3.14 -106.03 -0.33 -18.96 16 12 S 2.70 59.49 4.43 -107.50 -0.48 59.02 16 13 O -0.99 -22.09 13.70 -57.17 -0.78 -22.88 16 14 O -0.96 -23.91 14.91 -57.17 -0.85 -24.76 16 15 C -0.77 -17.93 4.73 -38.87 -0.18 -18.12 16 16 C 0.00 -0.04 7.51 -39.66 -0.30 -0.34 16 17 C -0.25 -5.22 10.05 -39.29 -0.39 -5.61 16 18 C -0.08 -1.66 10.02 -39.66 -0.40 -2.05 16 19 C -0.16 -3.74 8.66 -38.87 -0.34 -4.08 16 20 C 0.19 4.62 5.54 -106.83 -0.59 4.02 16 21 C -0.46 -10.93 7.09 -37.74 -0.27 -11.20 16 22 H 0.09 2.11 2.04 -52.48 -0.11 2.00 16 23 C 0.08 1.92 5.21 -17.34 -0.09 1.83 16 24 N -0.77 -18.51 10.95 55.55 0.61 -17.90 16 25 Si 0.90 17.12 29.58 -169.99 -5.03 12.09 16 26 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 27 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 28 H -0.25 -4.50 7.11 56.52 0.40 -4.10 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.60 6.57 -51.93 -0.34 0.26 16 32 H 0.12 2.12 5.23 -51.93 -0.27 1.85 16 33 H 0.09 1.61 4.81 -51.93 -0.25 1.36 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.10 1.20 6.89 -51.93 -0.36 0.85 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.11 2.04 5.62 -51.93 -0.29 1.75 16 41 H 0.11 2.17 7.32 -52.49 -0.38 1.79 16 42 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 43 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 44 H 0.12 2.97 6.29 -52.48 -0.33 2.64 16 45 H 0.29 6.22 8.30 -40.82 -0.34 5.88 16 LS Contribution 348.18 15.07 5.25 5.25 Total: -1.00 -28.26 348.18 -10.07 -38.34 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -6.03 Total: 12.62 kcal Atomic # 6 Polarization: -34.26 SS G_CDS: -2.06 Total: -36.32 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.28 Total: -36.86 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -2.00 Total: -54.13 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Atomic # 16 Polarization: 59.49 SS G_CDS: -0.48 Total: 59.02 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.26 -10.07 -38.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601304124.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.842 kcal (2) G-P(sol) polarization free energy of solvation -28.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds