Wall clock time and date at job start Tue Mar 31 2020 22:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46728 * 2 1 4 4 H 1.08999 * 109.67812 * 300.59364 * 3 2 1 5 5 C 1.53292 * 109.68678 * 61.11541 * 3 2 1 6 6 O 1.42953 * 109.22495 * 172.06279 * 5 3 2 7 7 C 1.42960 * 114.16775 * 297.41881 * 6 5 3 8 8 H 1.09000 * 109.51295 * 302.60430 * 7 6 5 9 9 C 1.53010 * 109.51310 * 182.50741 * 7 6 5 10 10 C 1.53287 * 109.26779 * 62.55530 * 7 6 5 11 11 N 1.47161 * 109.71113 * 180.02562 * 3 2 1 12 12 S 1.65596 * 120.98140 * 9.73431 * 11 3 2 13 13 O 1.42096 * 106.40476 * 42.07116 * 12 11 3 14 14 O 1.42099 * 106.40086 * 174.99349 * 12 11 3 15 15 C 1.76205 * 107.21692 * 288.53436 * 12 11 3 16 16 C 1.37634 * 120.12828 * 113.10071 * 15 12 11 17 17 C 1.38616 * 120.24316 * 179.72179 * 16 15 12 18 18 C 1.38654 * 120.50381 * 0.55599 * 17 16 15 19 19 C 1.37593 * 120.24739 * 359.72483 * 18 17 16 20 20 C 1.40697 * 120.12328 * 293.37439 * 15 12 11 21 21 C 1.41390 * 120.24961 * 359.97438 * 20 15 12 22 22 H 1.08005 * 119.99774 * 28.49107 * 21 20 15 23 23 C 1.39951 * 120.00561 * 208.48476 * 21 20 15 24 24 N 1.30826 * 119.99406 * 13.13250 * 23 21 20 25 25 Si 1.86800 * 120.00206 * 193.12962 * 23 21 20 26 26 H 1.48496 * 109.47078 * 89.99965 * 25 23 21 27 27 H 1.48502 * 109.46838 * 209.99923 * 25 23 21 28 28 H 1.48502 * 109.46975 * 330.00059 * 25 23 21 29 29 H 1.08997 * 109.47009 * 61.67008 * 1 2 3 30 30 H 1.08998 * 109.46269 * 181.66263 * 1 2 3 31 31 H 1.08996 * 109.46892 * 301.66709 * 1 2 3 32 32 H 1.09001 * 109.47508 * 240.00015 * 2 1 3 33 33 H 1.08996 * 109.47356 * 119.99169 * 2 1 3 34 34 H 1.08999 * 109.51011 * 52.13232 * 5 3 2 35 35 H 1.08998 * 109.51146 * 291.98723 * 5 3 2 36 36 H 1.08991 * 109.47071 * 60.09978 * 9 7 6 37 37 H 1.08999 * 109.46737 * 300.09852 * 9 7 6 38 38 H 1.08997 * 109.46953 * 180.10418 * 9 7 6 39 39 H 1.09000 * 109.68359 * 67.44487 * 10 7 6 40 40 H 1.08991 * 109.68494 * 188.00060 * 10 7 6 41 41 H 1.07995 * 119.87717 * 359.97438 * 16 15 12 42 42 H 1.08010 * 119.74422 * 180.25988 * 17 16 15 43 43 H 1.08004 * 119.87516 * 179.74677 * 18 17 16 44 44 H 1.08005 * 120.12573 * 180.02562 * 19 18 17 45 45 H 0.97000 * 119.99510 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6698 1.9627 -0.8835 5 6 1.5547 2.1618 1.2638 6 8 2.1842 3.4425 1.3475 7 6 3.6074 3.3882 1.4708 8 1 3.8747 2.8020 2.3500 9 6 4.1625 4.8069 1.6144 10 6 4.1989 2.7314 0.2184 11 7 3.5115 1.4488 -0.0006 12 16 4.3698 0.0532 -0.2412 13 8 3.7114 -0.6474 -1.2875 14 8 5.7390 0.4291 -0.2990 15 6 4.1844 -0.9297 1.2094 16 6 3.4921 -2.1181 1.1548 17 6 3.3497 -2.8960 2.2932 18 6 3.8916 -2.4824 3.5006 19 6 4.5827 -1.2953 3.5797 20 6 4.7386 -0.5000 2.4291 21 6 5.4473 0.7215 2.4984 22 1 5.2043 1.5260 1.8200 23 6 6.4635 0.8882 3.4460 24 7 6.9346 -0.1491 4.0892 25 14 7.1473 2.5917 3.7925 26 1 6.3659 3.2261 4.8843 27 1 8.5702 2.4799 4.2025 28 1 7.0494 3.4232 2.5660 29 1 -0.3633 0.4877 -0.9046 30 1 -0.3632 -1.0273 0.0298 31 1 -0.3633 0.5395 0.8746 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.8144 1.5703 2.1417 35 1 0.4733 2.2900 1.2172 36 1 3.7402 5.2738 2.5041 37 1 3.8949 5.3925 0.7349 38 1 5.2478 4.7648 1.7065 39 1 4.0467 3.3811 -0.6436 40 1 5.2650 2.5574 0.3638 41 1 3.0618 -2.4475 0.2207 42 1 2.8084 -3.8292 2.2403 43 1 3.7711 -3.0946 4.3822 44 1 5.0043 -0.9752 4.5211 45 1 7.6387 -0.0335 4.7463 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601304124.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:46 Heat of formation + Delta-G solvation = -112.508715 kcal Electronic energy + Delta-G solvation = -30567.359701 eV Core-core repulsion = 26676.031292 eV Total energy + Delta-G solvation = -3891.328410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.63735 -39.38553 -38.43434 -36.75347 -36.48283 -35.72611 -34.80207 -32.41888 -32.02131 -31.35716 -28.46966 -27.51053 -26.87661 -24.85683 -23.51752 -22.99784 -22.42984 -21.82978 -19.75185 -19.50361 -18.58689 -17.78222 -17.57284 -17.31741 -16.91492 -16.29745 -16.10381 -15.81454 -15.69383 -15.58483 -15.10652 -14.95693 -14.55376 -14.45087 -14.00594 -13.73450 -13.50287 -13.41970 -13.25959 -13.16389 -13.02516 -12.89901 -12.85205 -12.83263 -12.76393 -12.50462 -12.38786 -12.12454 -12.07393 -12.04925 -11.65901 -11.55241 -11.20606 -11.16024 -11.10384 -10.83477 -9.79958 -9.63473 -9.41410 -8.81240 -6.60456 -0.27424 0.52711 0.96581 1.33118 1.45633 1.49037 2.12169 2.13159 2.61674 2.80247 2.92139 3.43618 3.57910 3.66814 3.84057 4.00689 4.10763 4.16216 4.28866 4.33382 4.43948 4.48756 4.49196 4.50720 4.68507 4.68746 4.70940 4.80408 4.85330 4.93622 4.96165 5.05145 5.15416 5.18270 5.26611 5.27652 5.30236 5.36212 5.44982 5.51985 5.66823 5.74116 5.84264 6.00364 6.09403 6.22664 6.47398 6.67422 6.83201 8.15393 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009899 B = 0.008149 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.846893 B = 3435.374983 C = 4840.001354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.202 4.202 3 C 0.131 3.869 4 H 0.097 0.903 5 C 0.055 3.945 6 O -0.379 6.379 7 C 0.065 3.935 8 H 0.059 0.941 9 C -0.144 4.144 10 C 0.084 3.916 11 N -0.999 5.999 12 S 2.710 3.290 13 O -1.000 7.000 14 O -0.998 6.998 15 C -0.787 4.787 16 C -0.008 4.008 17 C -0.249 4.249 18 C -0.075 4.075 19 C -0.185 4.185 20 C 0.164 3.836 21 C -0.480 4.480 22 H 0.105 0.895 23 C 0.041 3.959 24 N -0.807 5.807 25 Si 0.951 3.049 26 H -0.246 1.246 27 H -0.269 1.269 28 H -0.236 1.236 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.041 0.959 35 H 0.132 0.868 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.126 0.874 43 H 0.120 0.880 44 H 0.111 0.889 45 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.816 7.189 -1.904 11.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.240 4.240 3 C 0.025 3.975 4 H 0.115 0.885 5 C -0.023 4.023 6 O -0.298 6.298 7 C 0.006 3.994 8 H 0.077 0.923 9 C -0.201 4.201 10 C -0.041 4.041 11 N -0.837 5.837 12 S 2.810 3.190 13 O -0.990 6.990 14 O -0.989 6.989 15 C -0.882 4.882 16 C -0.028 4.028 17 C -0.269 4.269 18 C -0.094 4.094 19 C -0.205 4.205 20 C 0.159 3.841 21 C -0.507 4.507 22 H 0.122 0.878 23 C -0.177 4.177 24 N -0.431 5.431 25 Si 0.769 3.231 26 H -0.170 1.170 27 H -0.193 1.193 28 H -0.159 1.159 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.150 0.850 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.139 0.861 42 H 0.144 0.856 43 H 0.138 0.862 44 H 0.129 0.871 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.233 7.102 -2.552 11.168 hybrid contribution 0.761 -0.470 1.118 1.432 sum -7.472 6.632 -1.434 10.093 Atomic orbital electron populations 1.21624 0.91536 1.02956 1.03028 1.22831 1.00752 0.95173 1.05285 1.21763 0.77702 0.97833 1.00158 0.88540 1.23124 0.98947 0.84417 0.95787 1.87853 1.19150 1.28508 1.94277 1.22633 0.81512 0.98847 0.96455 0.92267 1.21802 1.01139 0.93074 1.04104 1.22325 0.97656 0.84367 0.99778 1.57814 1.15446 1.21494 1.88979 1.00698 0.71779 0.72492 0.74002 1.93363 1.75724 1.74039 1.55891 1.93450 1.34344 1.83113 1.87967 1.30086 1.27140 1.14174 1.16772 1.20485 0.92593 0.91694 0.98007 1.20857 1.10215 1.02473 0.93377 1.21220 0.95160 0.95402 0.97625 1.21518 1.02987 0.97274 0.98686 1.17285 0.85764 0.91641 0.89376 1.20457 1.14353 1.00106 1.15833 0.87755 1.26771 0.95461 1.02490 0.92977 1.69836 1.21142 1.33125 1.18965 0.85649 0.78476 0.77691 0.81267 1.16981 1.19321 1.15869 0.90945 0.91689 0.91323 0.88147 0.91172 0.94013 0.85048 0.90646 0.90075 0.90487 0.88669 0.89056 0.86123 0.85592 0.86213 0.87143 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 9.64 71.98 0.69 -2.24 16 2 C -0.20 -6.23 4.00 30.60 0.12 -6.11 16 3 C 0.13 3.99 3.17 44.96 0.14 4.13 16 4 H 0.10 2.57 8.14 -2.39 -0.02 2.56 16 5 C 0.06 1.56 5.72 72.08 0.41 1.97 16 6 O -0.38 -11.38 10.38 -148.98 -1.55 -12.92 16 7 C 0.06 2.03 3.16 30.69 0.10 2.12 16 8 H 0.06 2.15 6.53 -2.39 -0.02 2.13 16 9 C -0.14 -3.50 9.57 71.99 0.69 -2.81 16 10 C 0.08 2.82 4.84 86.35 0.42 3.24 16 11 N -1.00 -36.76 3.14 -489.37 -1.54 -38.29 16 12 S 2.71 121.24 4.43 -56.49 -0.25 120.99 16 13 O -1.00 -44.74 13.70 -128.00 -1.75 -46.49 16 14 O -1.00 -50.97 14.91 -128.00 -1.91 -52.88 16 15 C -0.79 -37.23 4.73 22.73 0.11 -37.12 16 16 C -0.01 -0.35 7.51 22.22 0.17 -0.19 16 17 C -0.25 -10.24 10.05 22.46 0.23 -10.01 16 18 C -0.08 -3.26 10.02 22.22 0.22 -3.04 16 19 C -0.18 -9.09 8.66 22.73 0.20 -8.90 16 20 C 0.16 8.30 5.54 -21.29 -0.12 8.18 16 21 C -0.48 -23.76 7.09 23.46 0.17 -23.60 16 22 H 0.10 4.80 2.04 -2.91 -0.01 4.79 16 23 C 0.04 1.96 5.21 85.26 0.44 2.41 16 24 N -0.81 -40.00 10.95 21.83 0.24 -39.76 16 25 Si 0.95 34.99 29.58 68.60 2.03 37.02 16 26 H -0.25 -8.38 7.11 99.48 0.71 -7.68 16 27 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16 28 H -0.24 -8.07 7.11 99.48 0.71 -7.36 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.30 6.57 -2.39 -0.02 1.28 16 32 H 0.10 3.49 5.23 -2.39 -0.01 3.48 16 33 H 0.07 2.46 4.81 -2.39 -0.01 2.45 16 34 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.13 2.79 6.89 -2.39 -0.02 2.78 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 40 H 0.09 3.42 5.62 -2.39 -0.01 3.41 16 41 H 0.12 4.83 7.32 -2.91 -0.02 4.80 16 42 H 0.13 4.32 8.06 -2.91 -0.02 4.29 16 43 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 44 H 0.11 5.60 6.29 -2.91 -0.02 5.58 16 45 H 0.29 13.12 8.30 -92.71 -0.77 12.36 16 Total: -1.00 -62.54 348.18 0.28 -62.26 By element: Atomic # 1 Polarization: 41.02 SS G_CDS: 1.02 Total: 42.04 kcal Atomic # 6 Polarization: -75.94 SS G_CDS: 3.99 Total: -71.95 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -1.30 Total: -78.05 kcal Atomic # 8 Polarization: -107.09 SS G_CDS: -5.21 Total: -112.30 kcal Atomic # 14 Polarization: 34.99 SS G_CDS: 2.03 Total: 37.02 kcal Atomic # 16 Polarization: 121.24 SS G_CDS: -0.25 Total: 120.99 kcal Total: -62.54 0.28 -62.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601304124.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.249 kcal (2) G-P(sol) polarization free energy of solvation -62.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds