Wall clock time and date at job start Tue Mar 31 2020 23:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.51319 * 2 1 4 4 C 1.53301 * 109.51008 * 239.89897 * 2 1 3 5 5 N 1.47153 * 108.38253 * 187.72310 * 4 2 1 6 6 S 1.65601 * 120.97997 * 230.51458 * 5 4 2 7 7 O 1.42093 * 106.40230 * 346.92951 * 6 5 4 8 8 O 1.42099 * 106.39870 * 214.01348 * 6 5 4 9 9 C 1.76194 * 107.21716 * 100.47400 * 6 5 4 10 10 C 1.37639 * 120.13072 * 110.62892 * 9 6 5 11 11 C 1.38610 * 120.24965 * 180.02562 * 10 9 6 12 12 C 1.38649 * 120.50269 * 0.02562 * 11 10 9 13 13 C 1.37593 * 120.24943 * 359.97438 * 12 11 10 14 14 C 1.40701 * 120.12729 * 290.64132 * 9 6 5 15 15 C 1.41394 * 120.24289 * 359.96313 * 14 9 6 16 16 H 1.08001 * 120.00207 * 39.19423 * 15 14 9 17 17 C 1.39941 * 119.99998 * 219.18751 * 15 14 9 18 18 N 1.30824 * 120.00121 * 355.68680 * 17 15 14 19 19 Si 1.86804 * 120.00072 * 175.67691 * 17 15 14 20 20 H 1.48498 * 109.46618 * 90.00527 * 19 17 15 21 21 H 1.48498 * 109.47060 * 210.00459 * 19 17 15 22 22 H 1.48498 * 109.47130 * 330.00592 * 19 17 15 23 23 C 1.47149 * 118.03686 * 50.78860 * 5 4 2 24 24 C 1.53721 * 108.16084 * 309.15983 * 23 5 4 25 25 C 1.52999 * 109.65159 * 292.56932 * 24 23 5 26 26 C 1.52998 * 109.44173 * 172.37444 * 24 23 5 27 27 O 1.42956 * 109.55250 * 120.13044 * 2 1 3 28 28 H 1.08997 * 109.47178 * 180.10265 * 1 2 3 29 29 H 1.09004 * 109.46710 * 300.10355 * 1 2 3 30 30 H 1.09002 * 109.47035 * 60.09706 * 1 2 3 31 31 H 1.09000 * 109.67736 * 68.00216 * 4 2 1 32 32 H 1.09003 * 109.71142 * 307.46617 * 4 2 1 33 33 H 1.08001 * 119.87477 * 359.97438 * 10 9 6 34 34 H 1.08005 * 119.75000 * 179.97438 * 11 10 9 35 35 H 1.08000 * 119.87913 * 179.70357 * 12 11 10 36 36 H 1.07997 * 120.13314 * 179.97438 * 13 12 11 37 37 H 0.96996 * 119.99893 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.68419 * 68.93010 * 23 5 4 39 39 H 1.08997 * 109.68616 * 189.49062 * 23 5 4 40 40 H 1.09003 * 109.46621 * 179.74240 * 25 24 23 41 41 H 1.08999 * 109.47651 * 299.74222 * 25 24 23 42 42 H 1.08998 * 109.47195 * 59.74702 * 25 24 23 43 43 H 1.09001 * 109.47119 * 300.38270 * 26 24 23 44 44 H 1.08999 * 109.47247 * 60.38578 * 26 24 23 45 45 H 1.09000 * 109.47088 * 180.38334 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0420 -0.7247 -1.2501 5 7 3.5014 -0.8747 -1.1346 6 16 4.5057 -0.4166 -2.3691 7 8 3.6771 -0.2102 -3.5048 8 8 5.5963 -1.3275 -2.3579 9 6 5.1692 1.1593 -1.9441 10 6 6.5022 1.2845 -1.6249 11 6 7.0266 2.5230 -1.2898 12 6 6.2171 3.6484 -1.2713 13 6 4.8817 3.5469 -1.5869 14 6 4.3383 2.2947 -1.9295 15 6 2.9676 2.1784 -2.2561 16 1 2.4028 1.3219 -1.9187 17 6 2.3426 3.1731 -3.0165 18 7 3.0032 4.2508 -3.3536 19 14 0.5649 2.9621 -3.5505 20 1 -0.3337 3.5359 -2.5168 21 1 0.3487 3.6657 -4.8402 22 1 0.2669 1.5171 -3.7187 23 6 4.0414 -1.4493 0.1077 24 6 3.4323 -0.6844 1.2938 25 6 3.9531 0.7542 1.3004 26 6 3.8234 -1.3766 2.6011 27 8 2.0085 -0.6762 1.1651 28 1 -0.3633 -1.0276 0.0018 29 1 -0.3633 0.5155 0.8891 30 1 -0.3633 0.5123 -0.8909 31 1 1.8023 -0.1393 -2.1378 32 1 1.5765 -1.7077 -1.3218 33 1 7.1418 0.4143 -1.6349 34 1 8.0737 2.6119 -1.0403 35 1 6.6352 4.6077 -1.0040 36 1 4.2527 4.4247 -1.5715 37 1 2.5701 4.9401 -3.8809 38 1 3.7737 -2.5040 0.1712 39 1 5.1262 -1.3441 0.1197 40 1 3.5159 1.2950 2.1398 41 1 5.0387 0.7473 1.3986 42 1 3.6757 1.2453 0.3677 43 1 3.4537 -2.4020 2.5940 44 1 4.9090 -1.3824 2.6985 45 1 3.3860 -0.8385 3.4421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601319387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:28 Heat of formation + Delta-G solvation = -96.128192 kcal Electronic energy + Delta-G solvation = -30588.816553 eV Core-core repulsion = 26698.198456 eV Total energy + Delta-G solvation = -3890.618097 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -39.66918 -37.66224 -36.40204 -34.91664 -34.44113 -34.14034 -33.76267 -30.43549 -30.19347 -29.63082 -27.14472 -26.84333 -25.49035 -24.49313 -21.77752 -21.57742 -21.16795 -19.25998 -18.28746 -17.70174 -17.23513 -16.43341 -16.08139 -15.63718 -15.22982 -14.84587 -14.47724 -14.32090 -14.17271 -13.92682 -13.35117 -13.22956 -12.95512 -12.76495 -12.50653 -12.18266 -12.11683 -12.04103 -11.87103 -11.73471 -11.58270 -11.44325 -11.37089 -11.33760 -11.16853 -11.12988 -11.02982 -10.93128 -10.75410 -10.63591 -10.51426 -9.97208 -9.87589 -9.71399 -9.47219 -9.20054 -8.27785 -8.07791 -7.53058 -6.95208 -4.79615 1.37639 2.25831 2.69636 2.96407 3.00243 3.11283 3.71529 3.80277 3.88459 4.44346 4.67047 4.86609 5.02858 5.09214 5.19554 5.24219 5.34772 5.43791 5.57323 5.58008 5.69795 5.73174 5.85210 5.88035 5.93832 5.96672 6.02821 6.10329 6.15784 6.19867 6.23509 6.26782 6.31853 6.35654 6.57046 6.73511 6.76070 6.91580 6.94927 7.11412 7.26821 7.43456 7.54766 7.64244 7.73162 7.86183 8.23341 8.53495 8.59845 9.98334 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009858 B = 0.007792 C = 0.005985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.769547 B = 3592.493307 C = 4677.060341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.065 3.935 3 H 0.085 0.915 4 C 0.088 3.912 5 N -1.001 6.001 6 S 2.693 3.307 7 O -0.956 6.956 8 O -0.994 6.994 9 C -0.761 4.761 10 C -0.010 4.010 11 C -0.238 4.238 12 C -0.078 4.078 13 C -0.148 4.148 14 C 0.193 3.807 15 C -0.470 4.470 16 H 0.094 0.906 17 C 0.085 3.915 18 N -0.792 5.792 19 Si 0.905 3.095 20 H -0.264 1.264 21 H -0.272 1.272 22 H -0.250 1.250 23 C 0.108 3.892 24 C 0.102 3.898 25 C -0.184 4.184 26 C -0.135 4.135 27 O -0.371 6.371 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.285 0.715 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.968 -5.022 8.080 9.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.007 3.993 3 H 0.103 0.897 4 C -0.037 4.037 5 N -0.837 5.837 6 S 2.793 3.207 7 O -0.946 6.946 8 O -0.985 6.985 9 C -0.856 4.856 10 C -0.030 4.030 11 C -0.259 4.259 12 C -0.097 4.097 13 C -0.168 4.168 14 C 0.189 3.811 15 C -0.499 4.499 16 H 0.112 0.888 17 C -0.134 4.134 18 N -0.417 5.417 19 Si 0.728 3.272 20 H -0.189 1.189 21 H -0.197 1.197 22 H -0.173 1.173 23 C -0.018 4.018 24 C 0.061 3.939 25 C -0.241 4.241 26 C -0.193 4.193 27 O -0.291 6.291 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.132 0.868 32 H 0.086 0.914 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.144 0.856 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.966 -5.437 7.289 9.565 hybrid contribution -0.255 0.924 -0.159 0.971 sum -3.221 -4.513 7.130 9.032 Atomic orbital electron populations 1.21735 0.93069 1.02590 1.02689 1.22588 0.94669 0.97158 0.84923 0.89749 1.22233 0.79775 1.01403 1.00303 1.57998 1.16163 1.77813 1.31705 1.01437 0.72319 0.74139 0.72847 1.93524 1.67794 1.86742 1.46541 1.93448 1.54347 1.63908 1.86776 1.30126 1.03109 1.19447 1.32919 1.20267 0.92921 0.96868 0.92905 1.20537 0.98408 0.93423 1.13504 1.20962 0.94643 0.96531 0.97555 1.21602 0.94302 0.98849 1.02085 1.16998 0.91825 0.89678 0.82629 1.20044 0.94648 1.06490 1.28741 0.88820 1.25807 1.00261 0.93345 0.94028 1.69725 1.37811 1.06275 1.27859 0.86312 0.80994 0.80831 0.79074 1.18919 1.19701 1.17314 1.22013 0.98754 0.97328 0.83734 1.21869 0.81702 0.95631 0.94655 1.22483 1.01648 0.95857 1.04103 1.21717 1.01387 1.00655 0.95505 1.87881 1.20251 1.77466 1.43501 0.91997 0.91718 0.90886 0.86815 0.91359 0.87478 0.88672 0.88766 0.85607 0.90396 0.91040 0.89239 0.92300 0.91649 0.89740 0.91959 0.91029 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.57 37.16 0.36 -1.52 16 2 C 0.07 1.04 2.71 -26.57 -0.07 0.97 16 3 H 0.08 1.48 5.21 -51.93 -0.27 1.21 16 4 C 0.09 1.51 4.84 -3.53 -0.02 1.49 16 5 N -1.00 -18.29 2.80 -112.82 -0.32 -18.61 16 6 S 2.69 59.06 5.05 -107.50 -0.54 58.52 16 7 O -0.96 -23.47 15.00 -57.18 -0.86 -24.33 16 8 O -0.99 -22.65 16.16 -57.18 -0.92 -23.58 16 9 C -0.76 -17.43 5.55 -38.87 -0.22 -17.65 16 10 C -0.01 -0.21 9.53 -39.66 -0.38 -0.59 16 11 C -0.24 -4.96 10.05 -39.29 -0.39 -5.35 16 12 C -0.08 -1.67 10.02 -39.67 -0.40 -2.07 16 13 C -0.15 -3.50 8.63 -38.87 -0.34 -3.83 16 14 C 0.19 4.64 4.36 -106.82 -0.47 4.17 16 15 C -0.47 -11.12 6.94 -37.74 -0.26 -11.39 16 16 H 0.09 2.04 2.08 -52.49 -0.11 1.93 16 17 C 0.09 2.00 5.41 -17.34 -0.09 1.90 16 18 N -0.79 -19.15 10.92 55.55 0.61 -18.55 16 19 Si 0.90 17.77 29.56 -169.99 -5.03 12.74 16 20 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 22 H -0.25 -4.84 7.11 56.52 0.40 -4.44 16 23 C 0.11 1.69 5.25 -3.31 -0.02 1.67 16 24 C 0.10 1.50 1.12 -90.25 -0.10 1.39 16 25 C -0.18 -2.91 8.10 37.16 0.30 -2.61 16 26 C -0.13 -1.55 8.85 37.16 0.33 -1.22 16 27 O -0.37 -5.79 9.87 -35.23 -0.35 -6.13 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.11 2.13 5.11 -51.93 -0.27 1.87 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.11 2.17 7.33 -52.49 -0.38 1.78 16 34 H 0.10 1.72 8.06 -52.48 -0.42 1.30 16 35 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 36 H 0.13 3.03 6.52 -52.49 -0.34 2.69 16 37 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.09 1.37 7.55 -51.93 -0.39 0.98 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.08 1.56 4.41 -51.93 -0.23 1.33 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 355.66 15.07 5.36 5.36 Total: -1.00 -28.44 355.66 -10.01 -38.45 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -6.20 Total: 10.76 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: -1.77 Total: -34.63 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.29 Total: -37.15 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -2.13 Total: -54.04 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Atomic # 16 Polarization: 59.06 SS G_CDS: -0.54 Total: 58.52 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.44 -10.01 -38.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601319387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.679 kcal (2) G-P(sol) polarization free energy of solvation -28.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds