Wall clock time and date at job start Tue Mar 31 2020 23:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.51040 * 2 1 4 4 C 1.53296 * 109.51220 * 120.10444 * 2 1 3 5 5 N 1.47155 * 108.38323 * 172.22170 * 4 2 1 6 6 S 1.65604 * 120.97847 * 129.44098 * 5 4 2 7 7 O 1.42100 * 106.40436 * 343.15374 * 6 5 4 8 8 O 1.42097 * 106.39904 * 210.23013 * 6 5 4 9 9 C 1.76205 * 107.21503 * 96.69213 * 6 5 4 10 10 C 1.37640 * 120.12375 * 115.38610 * 9 6 5 11 11 C 1.38614 * 120.24280 * 179.97438 * 10 9 6 12 12 C 1.38655 * 120.50512 * 0.02562 * 11 10 9 13 13 C 1.37597 * 120.24813 * 359.97438 * 12 11 10 14 14 C 1.40697 * 120.12829 * 295.35942 * 9 6 5 15 15 C 1.41402 * 120.24460 * 0.02562 * 14 9 6 16 16 H 1.07999 * 119.99392 * 328.51306 * 15 14 9 17 17 C 1.39938 * 119.99922 * 148.51240 * 15 14 9 18 18 N 1.30825 * 119.99947 * 166.02562 * 17 15 14 19 19 Si 1.86801 * 120.00278 * 346.03115 * 17 15 14 20 20 H 1.48499 * 109.47397 * 89.43392 * 19 17 15 21 21 H 1.48501 * 109.46984 * 209.43662 * 19 17 15 22 22 H 1.48505 * 109.46708 * 329.43357 * 19 17 15 23 23 C 1.47149 * 118.03911 * 309.71831 * 5 4 2 24 24 C 1.52881 * 108.60802 * 50.22386 * 23 5 4 25 25 C 1.52995 * 109.58399 * 187.92600 * 24 23 5 26 26 C 1.53000 * 109.36468 * 67.81834 * 24 23 5 27 27 O 1.42960 * 109.50822 * 239.84897 * 2 1 3 28 28 H 1.09003 * 109.46924 * 299.89383 * 1 2 3 29 29 H 1.08997 * 109.47197 * 59.89659 * 1 2 3 30 30 H 1.09002 * 109.46803 * 179.89829 * 1 2 3 31 31 H 1.09003 * 109.67966 * 52.50236 * 4 2 1 32 32 H 1.09000 * 109.68454 * 291.94932 * 4 2 1 33 33 H 1.07997 * 119.87805 * 359.94965 * 10 9 6 34 34 H 1.08001 * 119.74381 * 179.97438 * 11 10 9 35 35 H 1.07995 * 119.87539 * 179.70667 * 12 11 10 36 36 H 1.08001 * 120.12753 * 179.97438 * 13 12 11 37 37 H 0.97000 * 120.00062 * 180.02562 * 18 17 15 38 38 H 1.08996 * 109.68546 * 170.00364 * 23 5 4 39 39 H 1.09002 * 109.68047 * 290.55825 * 23 5 4 40 40 H 1.08999 * 109.47042 * 179.88144 * 25 24 23 41 41 H 1.09003 * 109.46905 * 299.87812 * 25 24 23 42 42 H 1.08995 * 109.47325 * 59.88071 * 25 24 23 43 43 H 1.09000 * 109.47122 * 300.24768 * 26 24 23 44 44 H 1.08994 * 109.47421 * 60.25173 * 26 24 23 45 45 H 1.09003 * 109.46756 * 180.25105 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0421 -0.7247 1.2500 5 7 3.5012 -0.8759 1.1339 6 16 4.5066 -0.4172 2.3673 7 8 3.7419 0.4295 3.2145 8 8 5.7267 -0.0134 1.7613 9 6 4.8720 -1.8624 3.3069 10 6 6.1610 -2.3418 3.3637 11 6 6.4513 -3.4781 4.1025 12 6 5.4495 -4.1447 4.7915 13 6 4.1539 -3.6833 4.7489 14 6 3.8475 -2.5303 4.0025 15 6 2.5196 -2.0469 3.9515 16 1 2.3341 -0.9876 3.8517 17 6 1.4460 -2.9410 4.0304 18 7 0.2378 -2.4939 4.2581 19 14 1.7380 -4.7729 3.8107 20 1 2.0397 -5.3877 5.1284 21 1 0.5215 -5.4028 3.2375 22 1 2.8850 -4.9845 2.8914 23 6 4.0410 -1.4407 -0.1131 24 6 3.4313 -0.6861 -1.2946 25 6 3.8211 -1.3788 -2.6018 26 6 3.9531 0.7522 -1.3017 27 8 2.0075 -0.6768 -1.1652 28 1 -0.3633 0.5122 0.8910 29 1 -0.3633 0.5154 -0.8890 30 1 -0.3633 -1.0277 -0.0018 31 1 1.5758 -1.7074 1.3214 32 1 1.8031 -0.1391 2.1377 33 1 6.9489 -1.8310 2.8303 34 1 7.4654 -3.8475 4.1411 35 1 5.6863 -5.0318 5.3601 36 1 3.3751 -4.2043 5.2860 37 1 -0.5063 -3.1137 4.3132 38 1 5.1252 -1.3289 -0.1277 39 1 3.7795 -2.4967 -0.1812 40 1 3.3838 -0.8406 -3.4427 41 1 4.9067 -1.3854 -2.6998 42 1 3.4508 -2.4039 -2.5943 43 1 3.6765 1.2437 -0.3690 44 1 5.0385 0.7444 -1.4004 45 1 3.5159 1.2931 -2.1410 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601319388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:32 Heat of formation + Delta-G solvation = -100.336502 kcal Electronic energy + Delta-G solvation = -30044.394770 eV Core-core repulsion = 26153.594187 eV Total energy + Delta-G solvation = -3890.800583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.67250 -37.92097 -36.50451 -35.01322 -34.42049 -34.16412 -33.81302 -30.77956 -30.35559 -30.15401 -27.35237 -26.71004 -25.42376 -24.48399 -22.08749 -21.63177 -21.23199 -19.35901 -18.24199 -17.75216 -17.30660 -16.55637 -16.36936 -15.60467 -15.39231 -14.84658 -14.43773 -14.34468 -14.29781 -14.05632 -13.67747 -13.58315 -12.93799 -12.90557 -12.51974 -12.31290 -12.21204 -12.06914 -11.93392 -11.86339 -11.78369 -11.69749 -11.46351 -11.34712 -11.31585 -11.23015 -11.03077 -10.93332 -10.80972 -10.75167 -10.44462 -10.05180 -9.90703 -9.76220 -9.50603 -9.26718 -8.36408 -8.16908 -7.88274 -7.23605 -4.92742 1.33869 2.02781 2.47152 2.90818 3.00664 3.10456 3.66650 3.73391 3.84696 4.20147 4.60078 4.81909 4.95774 5.03731 5.07266 5.23084 5.30702 5.38311 5.56316 5.59366 5.66451 5.68904 5.75823 5.78849 5.85183 5.87063 5.95910 6.02258 6.08697 6.13475 6.16651 6.19349 6.30793 6.35711 6.37953 6.57666 6.60179 6.65851 6.89980 7.03207 7.05498 7.24051 7.38844 7.50582 7.51561 7.78595 8.09511 8.26538 8.48037 9.73784 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011585 B = 0.006549 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.275644 B = 4274.561001 C = 5369.663051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.071 3.929 3 H 0.061 0.939 4 C 0.103 3.897 5 N -0.994 5.994 6 S 2.704 3.296 7 O -0.966 6.966 8 O -0.992 6.992 9 C -0.770 4.770 10 C 0.016 3.984 11 C -0.258 4.258 12 C -0.044 4.044 13 C -0.238 4.238 14 C 0.166 3.834 15 C -0.458 4.458 16 H 0.129 0.871 17 C 0.091 3.909 18 N -0.777 5.777 19 Si 0.907 3.093 20 H -0.266 1.266 21 H -0.286 1.286 22 H -0.243 1.243 23 C 0.102 3.898 24 C 0.104 3.896 25 C -0.135 4.135 26 C -0.177 4.177 27 O -0.370 6.370 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.292 0.708 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.451 0.127 -9.500 9.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.012 3.988 3 H 0.079 0.921 4 C -0.022 4.022 5 N -0.829 5.829 6 S 2.803 3.197 7 O -0.956 6.956 8 O -0.982 6.982 9 C -0.865 4.865 10 C -0.004 4.004 11 C -0.278 4.278 12 C -0.062 4.062 13 C -0.258 4.258 14 C 0.161 3.839 15 C -0.485 4.485 16 H 0.146 0.854 17 C -0.132 4.132 18 N -0.398 5.398 19 Si 0.733 3.267 20 H -0.192 1.192 21 H -0.213 1.213 22 H -0.167 1.167 23 C -0.025 4.025 24 C 0.063 3.937 25 C -0.193 4.193 26 C -0.234 4.234 27 O -0.290 6.290 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.127 0.873 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.305 0.950 -9.452 9.589 hybrid contribution 0.142 -1.662 0.626 1.781 sum 1.448 -0.712 -8.826 8.973 Atomic orbital electron populations 1.21702 0.92617 1.03188 1.02308 1.22534 0.95038 0.95583 0.85610 0.92064 1.22200 0.78938 1.02517 0.98571 1.57665 1.16905 1.79890 1.28475 1.01067 0.71768 0.74474 0.72435 1.93497 1.70945 1.65366 1.65838 1.93439 1.45261 1.82150 1.77397 1.29946 1.01460 1.29054 1.25995 1.20397 0.93904 0.93175 0.92928 1.20511 0.98054 1.00726 1.08512 1.20848 0.93454 0.96629 0.95303 1.21321 0.96158 1.02081 1.06209 1.17096 0.91895 0.89101 0.85839 1.20369 0.88437 0.98957 1.40755 0.85372 1.26173 0.94486 1.01978 0.90564 1.69646 1.00841 1.39130 1.30168 0.86418 0.78818 0.81107 0.80330 1.19202 1.21308 1.16663 1.21907 0.99089 0.97950 0.83527 1.21665 0.81878 0.95120 0.95055 1.21711 1.01426 1.00979 0.95143 1.22393 1.02106 0.96555 1.02392 1.87922 1.20043 1.77457 1.43557 0.90572 0.92157 0.91626 0.90254 0.87290 0.86893 0.88063 0.88251 0.87342 0.89730 0.88735 0.90977 0.91726 0.90932 0.91644 0.92112 0.91077 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.57 37.16 0.36 -1.55 16 2 C 0.07 1.12 3.01 -26.58 -0.08 1.04 16 3 H 0.06 0.94 6.26 -51.93 -0.32 0.61 16 4 C 0.10 1.91 4.36 -3.53 -0.02 1.89 16 5 N -0.99 -18.72 2.82 -113.30 -0.32 -19.04 16 6 S 2.70 58.56 5.12 -107.50 -0.55 58.01 16 7 O -0.97 -23.37 14.35 -57.17 -0.82 -24.19 16 8 O -0.99 -21.55 15.77 -57.17 -0.90 -22.45 16 9 C -0.77 -17.77 5.96 -38.87 -0.23 -18.00 16 10 C 0.02 0.34 9.54 -39.66 -0.38 -0.04 16 11 C -0.26 -5.22 10.05 -39.29 -0.39 -5.61 16 12 C -0.04 -0.91 10.02 -39.66 -0.40 -1.30 16 13 C -0.24 -5.49 7.17 -38.87 -0.28 -5.77 16 14 C 0.17 4.03 5.11 -106.82 -0.55 3.49 16 15 C -0.46 -11.36 7.17 -37.74 -0.27 -11.63 16 16 H 0.13 3.36 4.35 -52.49 -0.23 3.14 16 17 C 0.09 2.16 5.45 -17.34 -0.09 2.06 16 18 N -0.78 -18.28 13.93 55.55 0.77 -17.50 16 19 Si 0.91 19.08 24.48 -169.99 -4.16 14.92 16 20 H -0.27 -5.46 6.48 56.52 0.37 -5.10 16 21 H -0.29 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.24 -5.29 6.94 56.52 0.39 -4.90 16 23 C 0.10 1.64 5.33 -3.75 -0.02 1.62 16 24 C 0.10 1.48 1.11 -90.68 -0.10 1.38 16 25 C -0.13 -1.50 8.85 37.15 0.33 -1.17 16 26 C -0.18 -2.41 8.08 37.16 0.30 -2.11 16 27 O -0.37 -5.79 9.87 -35.23 -0.35 -6.13 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 1.54 8.01 -51.93 -0.42 1.13 16 32 H 0.11 2.19 5.71 -51.93 -0.30 1.90 16 33 H 0.11 2.20 7.33 -52.49 -0.38 1.81 16 34 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 36 H 0.11 2.44 4.48 -52.49 -0.23 2.20 16 37 H 0.29 6.20 8.30 -40.82 -0.34 5.86 16 38 H 0.09 1.45 7.09 -51.93 -0.37 1.08 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.92 6.11 -51.93 -0.32 0.60 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 354.65 15.07 5.34 5.34 Total: -1.00 -28.29 354.65 -9.21 -37.49 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -6.40 Total: 9.26 kcal Atomic # 6 Polarization: -33.89 SS G_CDS: -1.82 Total: -35.71 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.45 Total: -36.54 kcal Atomic # 8 Polarization: -50.71 SS G_CDS: -2.07 Total: -52.78 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.16 Total: 14.92 kcal Atomic # 16 Polarization: 58.56 SS G_CDS: -0.55 Total: 58.01 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.29 -9.21 -37.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601319388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.844 kcal (2) G-P(sol) polarization free energy of solvation -28.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds