Wall clock time and date at job start Tue Mar 31 2020 23:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.51040 * 2 1 4 4 C 1.53296 * 109.51220 * 120.10444 * 2 1 3 5 5 N 1.47155 * 108.38323 * 172.22170 * 4 2 1 6 6 S 1.65604 * 120.97847 * 129.44098 * 5 4 2 7 7 O 1.42100 * 106.40436 * 343.15374 * 6 5 4 8 8 O 1.42097 * 106.39904 * 210.23013 * 6 5 4 9 9 C 1.76205 * 107.21503 * 96.69213 * 6 5 4 10 10 C 1.37640 * 120.12375 * 115.38610 * 9 6 5 11 11 C 1.38614 * 120.24280 * 179.97438 * 10 9 6 12 12 C 1.38655 * 120.50512 * 0.02562 * 11 10 9 13 13 C 1.37597 * 120.24813 * 359.97438 * 12 11 10 14 14 C 1.40697 * 120.12829 * 295.35942 * 9 6 5 15 15 C 1.41402 * 120.24460 * 0.02562 * 14 9 6 16 16 H 1.07999 * 119.99392 * 328.51306 * 15 14 9 17 17 C 1.39938 * 119.99922 * 148.51240 * 15 14 9 18 18 N 1.30825 * 119.99947 * 166.02562 * 17 15 14 19 19 Si 1.86801 * 120.00278 * 346.03115 * 17 15 14 20 20 H 1.48499 * 109.47397 * 89.43392 * 19 17 15 21 21 H 1.48501 * 109.46984 * 209.43662 * 19 17 15 22 22 H 1.48505 * 109.46708 * 329.43357 * 19 17 15 23 23 C 1.47149 * 118.03911 * 309.71831 * 5 4 2 24 24 C 1.52881 * 108.60802 * 50.22386 * 23 5 4 25 25 C 1.52995 * 109.58399 * 187.92600 * 24 23 5 26 26 C 1.53000 * 109.36468 * 67.81834 * 24 23 5 27 27 O 1.42960 * 109.50822 * 239.84897 * 2 1 3 28 28 H 1.09003 * 109.46924 * 299.89383 * 1 2 3 29 29 H 1.08997 * 109.47197 * 59.89659 * 1 2 3 30 30 H 1.09002 * 109.46803 * 179.89829 * 1 2 3 31 31 H 1.09003 * 109.67966 * 52.50236 * 4 2 1 32 32 H 1.09000 * 109.68454 * 291.94932 * 4 2 1 33 33 H 1.07997 * 119.87805 * 359.94965 * 10 9 6 34 34 H 1.08001 * 119.74381 * 179.97438 * 11 10 9 35 35 H 1.07995 * 119.87539 * 179.70667 * 12 11 10 36 36 H 1.08001 * 120.12753 * 179.97438 * 13 12 11 37 37 H 0.97000 * 120.00062 * 180.02562 * 18 17 15 38 38 H 1.08996 * 109.68546 * 170.00364 * 23 5 4 39 39 H 1.09002 * 109.68047 * 290.55825 * 23 5 4 40 40 H 1.08999 * 109.47042 * 179.88144 * 25 24 23 41 41 H 1.09003 * 109.46905 * 299.87812 * 25 24 23 42 42 H 1.08995 * 109.47325 * 59.88071 * 25 24 23 43 43 H 1.09000 * 109.47122 * 300.24768 * 26 24 23 44 44 H 1.08994 * 109.47421 * 60.25173 * 26 24 23 45 45 H 1.09003 * 109.46756 * 180.25105 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0421 -0.7247 1.2500 5 7 3.5012 -0.8759 1.1339 6 16 4.5066 -0.4172 2.3673 7 8 3.7419 0.4295 3.2145 8 8 5.7267 -0.0134 1.7613 9 6 4.8720 -1.8624 3.3069 10 6 6.1610 -2.3418 3.3637 11 6 6.4513 -3.4781 4.1025 12 6 5.4495 -4.1447 4.7915 13 6 4.1539 -3.6833 4.7489 14 6 3.8475 -2.5303 4.0025 15 6 2.5196 -2.0469 3.9515 16 1 2.3341 -0.9876 3.8517 17 6 1.4460 -2.9410 4.0304 18 7 0.2378 -2.4939 4.2581 19 14 1.7380 -4.7729 3.8107 20 1 2.0397 -5.3877 5.1284 21 1 0.5215 -5.4028 3.2375 22 1 2.8850 -4.9845 2.8914 23 6 4.0410 -1.4407 -0.1131 24 6 3.4313 -0.6861 -1.2946 25 6 3.8211 -1.3788 -2.6018 26 6 3.9531 0.7522 -1.3017 27 8 2.0075 -0.6768 -1.1652 28 1 -0.3633 0.5122 0.8910 29 1 -0.3633 0.5154 -0.8890 30 1 -0.3633 -1.0277 -0.0018 31 1 1.5758 -1.7074 1.3214 32 1 1.8031 -0.1391 2.1377 33 1 6.9489 -1.8310 2.8303 34 1 7.4654 -3.8475 4.1411 35 1 5.6863 -5.0318 5.3601 36 1 3.3751 -4.2043 5.2860 37 1 -0.5063 -3.1137 4.3132 38 1 5.1252 -1.3289 -0.1277 39 1 3.7795 -2.4967 -0.1812 40 1 3.3838 -0.8406 -3.4427 41 1 4.9067 -1.3854 -2.6998 42 1 3.4508 -2.4039 -2.5943 43 1 3.6765 1.2437 -0.3690 44 1 5.0385 0.7444 -1.4004 45 1 3.5159 1.2931 -2.1410 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601319388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:31 Heat of formation + Delta-G solvation = -118.516078 kcal Electronic energy + Delta-G solvation = -30045.183095 eV Core-core repulsion = 26153.594187 eV Total energy + Delta-G solvation = -3891.588909 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.92182 -39.62881 -38.26680 -36.79997 -35.91655 -35.52205 -35.30641 -32.50932 -31.85271 -31.53344 -28.37615 -27.99464 -27.15233 -25.84931 -23.77447 -22.96536 -22.83792 -20.65787 -19.85514 -19.49538 -18.92780 -18.13258 -17.73707 -17.21874 -16.95025 -16.17458 -15.99576 -15.87236 -15.65575 -15.47078 -15.27931 -15.20882 -14.61435 -14.20693 -14.02816 -13.68174 -13.57626 -13.42603 -13.34909 -13.11682 -13.09580 -13.01390 -12.92743 -12.82430 -12.75326 -12.72390 -12.53400 -12.50022 -12.36469 -12.19067 -11.93894 -11.73419 -11.30859 -11.19374 -11.11224 -10.89966 -10.02478 -9.64194 -9.60348 -8.99853 -6.74456 -0.33715 0.30689 0.74666 1.21080 1.33236 1.41596 2.02071 2.09159 2.47394 2.68377 2.87755 3.27608 3.46890 3.75952 3.79039 3.98724 4.03426 4.06385 4.17157 4.27812 4.27910 4.34908 4.39688 4.58633 4.64559 4.66982 4.74371 4.79952 4.81290 4.88606 4.89658 4.96257 5.04905 5.06937 5.12056 5.19144 5.26323 5.30399 5.35102 5.41809 5.49140 5.63819 5.70354 5.80120 6.05922 6.26128 6.30139 6.50691 6.67541 8.03028 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011585 B = 0.006549 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.275644 B = 4274.561001 C = 5369.663051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.076 3.924 3 H 0.066 0.934 4 C 0.108 3.892 5 N -0.990 5.990 6 S 2.713 3.287 7 O -1.000 7.000 8 O -0.995 6.995 9 C -0.788 4.788 10 C 0.001 3.999 11 C -0.248 4.248 12 C -0.041 4.041 13 C -0.263 4.263 14 C 0.147 3.853 15 C -0.483 4.483 16 H 0.101 0.899 17 C 0.067 3.933 18 N -0.805 5.805 19 Si 0.949 3.051 20 H -0.256 1.256 21 H -0.272 1.272 22 H -0.255 1.255 23 C 0.091 3.909 24 C 0.099 3.901 25 C -0.130 4.130 26 C -0.177 4.177 27 O -0.373 6.373 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.131 0.869 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.110 0.890 37 H 0.301 0.699 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.066 0.934 43 H 0.038 0.962 44 H 0.080 0.920 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.903 -1.361 -11.007 11.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.016 3.984 3 H 0.084 0.916 4 C -0.017 4.017 5 N -0.827 5.827 6 S 2.812 3.188 7 O -0.990 6.990 8 O -0.985 6.985 9 C -0.881 4.881 10 C -0.019 4.019 11 C -0.268 4.268 12 C -0.059 4.059 13 C -0.283 4.283 14 C 0.143 3.857 15 C -0.510 4.510 16 H 0.119 0.881 17 C -0.154 4.154 18 N -0.428 5.428 19 Si 0.773 3.227 20 H -0.181 1.181 21 H -0.199 1.199 22 H -0.178 1.178 23 C -0.034 4.034 24 C 0.059 3.941 25 C -0.188 4.188 26 C -0.235 4.235 27 O -0.293 6.293 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.149 0.851 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.127 0.873 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.085 0.915 43 H 0.057 0.943 44 H 0.099 0.901 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.764 -0.539 -10.950 11.307 hybrid contribution -0.149 -1.179 1.089 1.612 sum 2.615 -1.718 -9.861 10.346 Atomic orbital electron populations 1.21699 0.91058 1.03212 1.03447 1.22508 0.96253 0.95259 0.84350 0.91624 1.22107 0.78758 1.01585 0.99283 1.57453 1.16668 1.79988 1.28639 1.00630 0.71638 0.74136 0.72413 1.93451 1.71684 1.66637 1.67255 1.93417 1.45484 1.82271 1.77365 1.30225 1.02263 1.29214 1.26443 1.20764 0.93607 0.94005 0.93495 1.21018 0.99813 0.99538 1.06427 1.21312 0.92396 0.97498 0.94739 1.21483 0.97621 1.02270 1.06902 1.17315 0.91931 0.90114 0.86367 1.20245 0.89538 0.98044 1.43187 0.88093 1.26638 0.94080 1.04549 0.90111 1.69652 1.01446 1.40413 1.31275 0.85772 0.78693 0.77845 0.80395 1.18147 1.19869 1.17846 1.22244 0.99744 0.98417 0.82988 1.21904 0.81004 0.95611 0.95626 1.21737 1.02823 1.00739 0.93452 1.22411 1.02853 0.96140 1.02056 1.87928 1.21060 1.77417 1.42900 0.90508 0.89913 0.92157 0.91846 0.89798 0.85122 0.84213 0.84429 0.87259 0.88790 0.87925 0.90722 0.90415 0.88965 0.91535 0.94279 0.90150 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.57 71.98 0.69 -3.00 16 2 C 0.08 2.39 3.01 30.70 0.09 2.49 16 3 H 0.07 2.02 6.26 -2.39 -0.01 2.01 16 4 C 0.11 4.20 4.36 86.35 0.38 4.58 16 5 N -0.99 -38.18 2.82 -512.36 -1.44 -39.63 16 6 S 2.71 120.56 5.12 -56.49 -0.29 120.27 16 7 O -1.00 -51.03 14.35 -128.00 -1.84 -52.87 16 8 O -0.99 -43.17 15.77 -128.00 -2.02 -45.19 16 9 C -0.79 -36.56 5.96 22.73 0.14 -36.42 16 10 C 0.00 0.04 9.54 22.22 0.21 0.25 16 11 C -0.25 -9.23 10.05 22.46 0.23 -9.00 16 12 C -0.04 -1.59 10.02 22.22 0.22 -1.36 16 13 C -0.26 -11.91 7.17 22.73 0.16 -11.75 16 14 C 0.15 7.29 5.11 -21.29 -0.11 7.18 16 15 C -0.48 -24.97 7.17 23.46 0.17 -24.81 16 16 H 0.10 5.69 4.35 -2.91 -0.01 5.68 16 17 C 0.07 3.25 5.45 85.25 0.46 3.71 16 18 N -0.81 -39.23 13.93 21.82 0.30 -38.93 16 19 Si 0.95 39.10 24.48 68.60 1.68 40.78 16 20 H -0.26 -10.03 6.48 99.48 0.64 -9.39 16 21 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 22 H -0.25 -10.84 6.94 99.48 0.69 -10.15 16 23 C 0.09 2.89 5.33 86.22 0.46 3.35 16 24 C 0.10 2.67 1.11 -10.83 -0.01 2.66 16 25 C -0.13 -2.53 8.85 71.98 0.64 -1.89 16 26 C -0.18 -4.56 8.08 71.98 0.58 -3.97 16 27 O -0.37 -11.28 9.87 -148.98 -1.47 -12.75 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 2.62 8.01 -2.39 -0.02 2.60 16 32 H 0.08 3.67 5.71 -2.39 -0.01 3.66 16 33 H 0.13 4.82 7.33 -2.91 -0.02 4.80 16 34 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 35 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 36 H 0.11 4.83 4.48 -2.91 -0.01 4.81 16 37 H 0.30 13.09 8.30 -92.71 -0.77 12.32 16 38 H 0.10 3.03 7.09 -2.39 -0.02 3.01 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.04 1.16 6.11 -2.39 -0.01 1.15 16 44 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -62.05 354.65 0.16 -61.89 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: 0.93 Total: 34.40 kcal Atomic # 6 Polarization: -72.29 SS G_CDS: 4.31 Total: -67.99 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -1.14 Total: -78.56 kcal Atomic # 8 Polarization: -105.48 SS G_CDS: -5.33 Total: -110.80 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 1.68 Total: 40.78 kcal Atomic # 16 Polarization: 120.56 SS G_CDS: -0.29 Total: 120.27 kcal Total: -62.05 0.16 -61.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601319388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.624 kcal (2) G-P(sol) polarization free energy of solvation -62.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds