Wall clock time and date at job start Tue Mar 31 2020 22:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46796 * 2 1 4 4 H 1.09005 * 109.51399 * 305.10052 * 3 2 1 5 5 C 1.53300 * 109.51487 * 185.00593 * 3 2 1 6 6 N 1.47148 * 108.38856 * 187.72487 * 5 3 2 7 7 S 1.65602 * 120.98293 * 230.51374 * 6 5 3 8 8 O 1.42105 * 106.40154 * 15.98043 * 7 6 5 9 9 O 1.42099 * 106.40344 * 148.90670 * 7 6 5 10 10 C 1.76202 * 107.21301 * 262.44490 * 7 6 5 11 11 C 1.37638 * 120.12565 * 244.17382 * 10 7 6 12 12 C 1.38618 * 120.24621 * 179.72560 * 11 10 7 13 13 C 1.38648 * 120.50171 * 0.55347 * 12 11 10 14 14 C 1.37602 * 120.24986 * 359.73011 * 13 12 11 15 15 C 1.40698 * 120.13268 * 64.45330 * 10 7 6 16 16 C 1.41397 * 120.23909 * 359.97438 * 15 10 7 17 17 H 1.08005 * 120.00448 * 30.27777 * 16 15 10 18 18 C 1.39945 * 120.00138 * 210.27100 * 16 15 10 19 19 N 1.30831 * 119.99845 * 11.28347 * 18 16 15 20 20 Si 1.86800 * 120.00493 * 191.27966 * 18 16 15 21 21 H 1.48508 * 109.46653 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47277 * 120.00146 * 20 18 16 23 23 H 1.48498 * 109.47178 * 240.00730 * 20 18 16 24 24 C 1.47152 * 118.03530 * 50.53103 * 6 5 3 25 25 C 1.53296 * 108.38454 * 309.46262 * 24 6 5 26 26 H 1.08997 * 109.51906 * 292.32714 * 25 24 6 27 27 C 1.53003 * 109.51170 * 172.22571 * 25 24 6 28 28 O 1.42962 * 109.22118 * 52.30893 * 25 24 6 29 29 H 1.08998 * 109.47542 * 60.00084 * 1 2 3 30 30 H 1.09007 * 109.46738 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47208 * 299.99254 * 1 2 3 32 32 H 1.09004 * 109.47059 * 240.00277 * 2 1 3 33 33 H 1.08998 * 109.47542 * 119.99916 * 2 1 3 34 34 H 1.08997 * 109.68621 * 67.99402 * 5 3 2 35 35 H 1.09009 * 109.67674 * 307.44523 * 5 3 2 36 36 H 1.08004 * 119.87468 * 359.97438 * 11 10 7 37 37 H 1.08004 * 119.74568 * 180.30705 * 12 11 10 38 38 H 1.08008 * 119.87924 * 179.74685 * 13 12 11 39 39 H 1.07996 * 120.12777 * 180.02562 * 14 13 12 40 40 H 0.96996 * 120.00000 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.68300 * 189.74515 * 24 6 5 42 42 H 1.08994 * 109.71419 * 69.20961 * 24 6 5 43 43 H 1.08999 * 109.47089 * 60.00593 * 27 25 24 44 44 H 1.08998 * 109.47473 * 300.00390 * 27 25 24 45 45 H 1.09005 * 109.47308 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6042 1.9827 -0.8406 5 6 3.5677 1.4456 -0.1261 6 7 4.0463 2.8242 0.0630 7 16 5.0848 3.5224 -1.0215 8 8 5.0405 2.7197 -2.1934 9 8 4.7914 4.9127 -1.0201 10 6 6.7121 3.3566 -0.3663 11 6 7.4354 4.4757 -0.0218 12 6 8.7135 4.3480 0.4993 13 6 9.2824 3.0950 0.6687 14 6 8.5799 1.9626 0.3257 15 6 7.2793 2.0800 -0.1987 16 6 6.5477 0.9234 -0.5542 17 1 5.8254 0.9665 -1.3560 18 6 6.7596 -0.2773 0.1328 19 7 7.4617 -0.2842 1.2367 20 14 6.0400 -1.8702 -0.5263 21 1 5.2936 -1.5945 -1.7802 22 1 7.1374 -2.8311 -0.8050 23 1 5.1174 -2.4511 0.4820 24 6 3.5751 3.5639 1.2446 25 6 2.0469 3.4577 1.3038 26 1 1.6112 4.0060 0.4686 27 6 1.5442 4.0502 2.6219 28 8 1.6673 2.0818 1.2232 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8552 1.0896 -1.1154 35 1 4.0003 0.7988 0.6374 36 1 7.0039 5.4569 -0.1541 37 1 9.2720 5.2314 0.7715 38 1 10.2806 3.0073 1.0718 39 1 9.0248 0.9876 0.4590 40 1 7.6082 -1.1163 1.7131 41 1 3.8674 4.6108 1.1630 42 1 4.0084 3.1311 2.1463 43 1 1.8379 5.0980 2.6847 44 1 1.9788 3.5004 3.4566 45 1 0.4576 3.9740 2.6635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601342372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:04 Heat of formation + Delta-G solvation = -110.856424 kcal Electronic energy + Delta-G solvation = -29581.170326 eV Core-core repulsion = 25689.913565 eV Total energy + Delta-G solvation = -3891.256761 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -39.29989 -37.63189 -36.45295 -34.97727 -34.58690 -34.27279 -33.84911 -31.29272 -30.26182 -29.59735 -28.02956 -25.68136 -25.45771 -23.23039 -21.68324 -21.30959 -21.18241 -20.54700 -18.18958 -17.68029 -17.19083 -16.60067 -16.08254 -15.61409 -15.40512 -15.00610 -14.50421 -14.38356 -14.23615 -13.87629 -13.57182 -13.32045 -13.21109 -12.93363 -12.79682 -12.36819 -12.21467 -12.03444 -11.92708 -11.79607 -11.50320 -11.47155 -11.30225 -11.24552 -11.20180 -11.13111 -10.94941 -10.87668 -10.76517 -10.62087 -10.55344 -10.07029 -9.91088 -9.78138 -9.50730 -9.22813 -8.28344 -8.03370 -7.62738 -7.08697 -4.82370 1.40581 2.29563 2.66894 2.92946 3.00257 3.03806 3.70978 3.72984 3.82713 4.34486 4.66247 4.79292 5.06092 5.12795 5.16151 5.23410 5.25324 5.36120 5.43414 5.45893 5.61227 5.65290 5.79956 5.81712 5.88653 5.95339 6.00029 6.02385 6.09903 6.19377 6.19634 6.25408 6.34624 6.35855 6.49644 6.56611 6.74939 6.90492 6.99249 7.14210 7.29883 7.44204 7.47178 7.65069 7.76731 7.89923 8.30463 8.47594 8.61507 9.85035 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010084 B = 0.006624 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2776.035544 B = 4226.326298 C = 5864.217882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C 0.079 3.921 4 H 0.059 0.941 5 C 0.098 3.902 6 N -0.994 5.994 7 S 2.703 3.297 8 O -0.972 6.972 9 O -0.995 6.995 10 C -0.775 4.775 11 C -0.005 4.005 12 C -0.247 4.247 13 C -0.077 4.077 14 C -0.156 4.156 15 C 0.193 3.807 16 C -0.475 4.475 17 H 0.112 0.888 18 C 0.082 3.918 19 N -0.778 5.778 20 Si 0.899 3.101 21 H -0.248 1.248 22 H -0.268 1.268 23 H -0.266 1.266 24 C 0.097 3.903 25 C 0.078 3.922 26 H 0.060 0.940 27 C -0.142 4.142 28 O -0.373 6.373 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.286 0.714 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.192 0.199 2.254 9.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C 0.019 3.981 4 H 0.077 0.923 5 C -0.027 4.027 6 N -0.829 5.829 7 S 2.803 3.197 8 O -0.963 6.963 9 O -0.985 6.985 10 C -0.870 4.870 11 C -0.025 4.025 12 C -0.267 4.267 13 C -0.096 4.096 14 C -0.175 4.175 15 C 0.188 3.812 16 C -0.503 4.503 17 H 0.130 0.870 18 C -0.139 4.139 19 N -0.401 5.401 20 Si 0.721 3.279 21 H -0.171 1.171 22 H -0.193 1.193 23 H -0.191 1.191 24 C -0.030 4.030 25 C 0.019 3.981 26 H 0.078 0.922 27 C -0.200 4.200 28 O -0.292 6.292 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.141 0.859 40 H 0.097 0.903 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.482 0.345 1.783 9.654 hybrid contribution 0.783 -0.823 0.305 1.176 sum -8.698 -0.478 2.087 8.958 Atomic orbital electron populations 1.21691 0.95307 1.01239 1.02101 1.21533 0.96526 0.94275 1.03266 1.22554 0.94404 0.94006 0.87089 0.92329 1.22192 0.93089 0.82997 1.04470 1.57661 1.62386 1.23221 1.39637 1.01016 0.73815 0.71763 0.73096 1.93465 1.87452 1.69932 1.45435 1.93433 1.85345 1.32613 1.87152 1.29846 1.22355 1.00187 1.34638 1.20241 0.93974 0.95692 0.92553 1.20503 0.97533 0.96259 1.12413 1.20915 0.97836 0.93400 0.97453 1.21498 0.94760 0.97428 1.03845 1.17013 0.90569 0.89492 0.84089 1.20464 1.20579 0.93291 1.15951 0.87033 1.25969 0.93477 1.01064 0.93407 1.69795 1.28899 1.29753 1.11636 0.86362 0.80199 0.80361 0.80946 1.17135 1.19253 1.19064 1.22001 0.94570 0.97261 0.89134 1.22377 0.93860 0.83262 0.98616 0.92200 1.21723 1.01671 1.00562 0.96011 1.87876 1.79714 1.23464 1.38163 0.93045 0.92939 0.92037 0.90245 0.90752 0.87797 0.90080 0.87485 0.88661 0.88785 0.85942 0.90266 0.88807 0.90764 0.90879 0.91578 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.81 37.16 0.36 -1.25 16 2 C -0.12 -1.53 5.65 -26.73 -0.15 -1.68 16 3 C 0.08 1.20 2.77 -26.58 -0.07 1.13 16 4 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 5 C 0.10 1.77 4.36 -3.53 -0.02 1.76 16 6 N -0.99 -19.01 3.28 -113.06 -0.37 -19.38 16 7 S 2.70 59.72 5.10 -107.50 -0.55 59.17 16 8 O -0.97 -23.26 14.35 -57.17 -0.82 -24.08 16 9 O -0.99 -22.50 15.81 -57.17 -0.90 -23.41 16 10 C -0.77 -18.57 5.96 -38.87 -0.23 -18.80 16 11 C 0.00 -0.11 9.53 -39.66 -0.38 -0.48 16 12 C -0.25 -5.39 10.05 -39.29 -0.39 -5.78 16 13 C -0.08 -1.73 10.02 -39.66 -0.40 -2.12 16 14 C -0.16 -3.82 8.65 -38.87 -0.34 -4.16 16 15 C 0.19 4.87 5.53 -106.83 -0.59 4.28 16 16 C -0.47 -11.54 6.72 -37.74 -0.25 -11.79 16 17 H 0.11 2.71 4.10 -52.48 -0.22 2.50 16 18 C 0.08 1.86 5.23 -17.34 -0.09 1.77 16 19 N -0.78 -18.10 10.98 55.55 0.61 -17.49 16 20 Si 0.90 17.06 29.57 -169.99 -5.03 12.03 16 21 H -0.25 -4.68 7.11 56.52 0.40 -4.27 16 22 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 23 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 24 C 0.10 1.59 5.98 -3.53 -0.02 1.57 16 25 C 0.08 1.12 3.40 -26.58 -0.09 1.03 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 C -0.14 -1.59 9.57 37.16 0.36 -1.23 16 28 O -0.37 -5.71 9.58 -35.23 -0.34 -6.05 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 31 H 0.06 0.71 7.83 -51.93 -0.41 0.30 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.10 1.94 5.74 -51.93 -0.30 1.65 16 35 H 0.08 1.52 8.00 -51.92 -0.42 1.11 16 36 H 0.11 2.24 7.33 -52.48 -0.38 1.86 16 37 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 38 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 39 H 0.12 3.03 6.36 -52.49 -0.33 2.70 16 40 H 0.29 6.03 8.30 -40.82 -0.34 5.69 16 41 H 0.09 1.49 7.14 -51.93 -0.37 1.12 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 365.56 15.07 5.51 5.51 Total: -1.00 -28.50 365.56 -10.83 -39.33 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -6.63 Total: 10.14 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: -2.30 Total: -35.78 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.24 Total: -36.87 kcal Atomic # 8 Polarization: -51.47 SS G_CDS: -2.06 Total: -53.54 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.03 kcal Atomic # 16 Polarization: 59.72 SS G_CDS: -0.55 Total: 59.17 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.50 -10.83 -39.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601342372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.528 kcal (2) G-P(sol) polarization free energy of solvation -28.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds