Wall clock time and date at job start Tue Mar 31 2020 22:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46796 * 2 1 4 4 H 1.09005 * 109.51399 * 305.10052 * 3 2 1 5 5 C 1.53300 * 109.51487 * 185.00593 * 3 2 1 6 6 N 1.47148 * 108.38856 * 187.72487 * 5 3 2 7 7 S 1.65602 * 120.98293 * 230.51374 * 6 5 3 8 8 O 1.42105 * 106.40154 * 15.98043 * 7 6 5 9 9 O 1.42099 * 106.40344 * 148.90670 * 7 6 5 10 10 C 1.76202 * 107.21301 * 262.44490 * 7 6 5 11 11 C 1.37638 * 120.12565 * 244.17382 * 10 7 6 12 12 C 1.38618 * 120.24621 * 179.72560 * 11 10 7 13 13 C 1.38648 * 120.50171 * 0.55347 * 12 11 10 14 14 C 1.37602 * 120.24986 * 359.73011 * 13 12 11 15 15 C 1.40698 * 120.13268 * 64.45330 * 10 7 6 16 16 C 1.41397 * 120.23909 * 359.97438 * 15 10 7 17 17 H 1.08005 * 120.00448 * 30.27777 * 16 15 10 18 18 C 1.39945 * 120.00138 * 210.27100 * 16 15 10 19 19 N 1.30831 * 119.99845 * 11.28347 * 18 16 15 20 20 Si 1.86800 * 120.00493 * 191.27966 * 18 16 15 21 21 H 1.48508 * 109.46653 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47277 * 120.00146 * 20 18 16 23 23 H 1.48498 * 109.47178 * 240.00730 * 20 18 16 24 24 C 1.47152 * 118.03530 * 50.53103 * 6 5 3 25 25 C 1.53296 * 108.38454 * 309.46262 * 24 6 5 26 26 H 1.08997 * 109.51906 * 292.32714 * 25 24 6 27 27 C 1.53003 * 109.51170 * 172.22571 * 25 24 6 28 28 O 1.42962 * 109.22118 * 52.30893 * 25 24 6 29 29 H 1.08998 * 109.47542 * 60.00084 * 1 2 3 30 30 H 1.09007 * 109.46738 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47208 * 299.99254 * 1 2 3 32 32 H 1.09004 * 109.47059 * 240.00277 * 2 1 3 33 33 H 1.08998 * 109.47542 * 119.99916 * 2 1 3 34 34 H 1.08997 * 109.68621 * 67.99402 * 5 3 2 35 35 H 1.09009 * 109.67674 * 307.44523 * 5 3 2 36 36 H 1.08004 * 119.87468 * 359.97438 * 11 10 7 37 37 H 1.08004 * 119.74568 * 180.30705 * 12 11 10 38 38 H 1.08008 * 119.87924 * 179.74685 * 13 12 11 39 39 H 1.07996 * 120.12777 * 180.02562 * 14 13 12 40 40 H 0.96996 * 120.00000 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.68300 * 189.74515 * 24 6 5 42 42 H 1.08994 * 109.71419 * 69.20961 * 24 6 5 43 43 H 1.08999 * 109.47089 * 60.00593 * 27 25 24 44 44 H 1.08998 * 109.47473 * 300.00390 * 27 25 24 45 45 H 1.09005 * 109.47308 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6042 1.9827 -0.8406 5 6 3.5677 1.4456 -0.1261 6 7 4.0463 2.8242 0.0630 7 16 5.0848 3.5224 -1.0215 8 8 5.0405 2.7197 -2.1934 9 8 4.7914 4.9127 -1.0201 10 6 6.7121 3.3566 -0.3663 11 6 7.4354 4.4757 -0.0218 12 6 8.7135 4.3480 0.4993 13 6 9.2824 3.0950 0.6687 14 6 8.5799 1.9626 0.3257 15 6 7.2793 2.0800 -0.1987 16 6 6.5477 0.9234 -0.5542 17 1 5.8254 0.9665 -1.3560 18 6 6.7596 -0.2773 0.1328 19 7 7.4617 -0.2842 1.2367 20 14 6.0400 -1.8702 -0.5263 21 1 5.2936 -1.5945 -1.7802 22 1 7.1374 -2.8311 -0.8050 23 1 5.1174 -2.4511 0.4820 24 6 3.5751 3.5639 1.2446 25 6 2.0469 3.4577 1.3038 26 1 1.6112 4.0060 0.4686 27 6 1.5442 4.0502 2.6219 28 8 1.6673 2.0818 1.2232 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8552 1.0896 -1.1154 35 1 4.0003 0.7988 0.6374 36 1 7.0039 5.4569 -0.1541 37 1 9.2720 5.2314 0.7715 38 1 10.2806 3.0073 1.0718 39 1 9.0248 0.9876 0.4590 40 1 7.6082 -1.1163 1.7131 41 1 3.8674 4.6108 1.1630 42 1 4.0084 3.1311 2.1463 43 1 1.8379 5.0980 2.6847 44 1 1.9788 3.5004 3.4566 45 1 0.4576 3.9740 2.6635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601342372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:02 Heat of formation + Delta-G solvation = -127.489949 kcal Electronic energy + Delta-G solvation = -29581.891609 eV Core-core repulsion = 25689.913565 eV Total energy + Delta-G solvation = -3891.978045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.54610 -39.40812 -38.24473 -36.78775 -35.94814 -35.64529 -35.36947 -32.34335 -32.03851 -31.38847 -29.22778 -27.36719 -26.79067 -24.42592 -23.44484 -22.97876 -22.38652 -21.79495 -19.86459 -19.43880 -18.82753 -17.87402 -17.73870 -17.21692 -17.00522 -16.31369 -16.05992 -15.84149 -15.56995 -15.24798 -15.08773 -14.94009 -14.60592 -14.48578 -14.08462 -13.76899 -13.54083 -13.38138 -13.18531 -13.15765 -13.03853 -13.02596 -12.95293 -12.86040 -12.74177 -12.54586 -12.40055 -12.21340 -12.15577 -11.89486 -11.80169 -11.66029 -11.27564 -11.22692 -11.20246 -10.91480 -9.90835 -9.63774 -9.44464 -8.81100 -6.64635 -0.29985 0.49985 0.94116 1.35873 1.44883 1.50770 2.11138 2.14509 2.59555 2.68990 2.91176 3.42345 3.50196 3.78838 3.84101 3.97735 4.05270 4.12757 4.25596 4.29190 4.32226 4.42454 4.46892 4.48013 4.67665 4.68440 4.77374 4.85712 4.89657 4.95086 4.97886 5.07020 5.13198 5.14286 5.16294 5.25563 5.30509 5.33692 5.47715 5.51045 5.59919 5.70331 5.83458 5.97066 6.10506 6.26201 6.48716 6.68381 6.80806 8.15404 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010084 B = 0.006624 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2776.035544 B = 4226.326298 C = 5864.217882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 C 0.082 3.918 4 H 0.064 0.936 5 C 0.096 3.904 6 N -0.992 5.992 7 S 2.716 3.284 8 O -0.996 6.996 9 O -1.002 7.002 10 C -0.796 4.796 11 C -0.018 4.018 12 C -0.249 4.249 13 C -0.077 4.077 14 C -0.184 4.184 15 C 0.166 3.834 16 C -0.493 4.493 17 H 0.105 0.895 18 C 0.052 3.948 19 N -0.801 5.801 20 Si 0.951 3.049 21 H -0.249 1.249 22 H -0.263 1.263 23 H -0.248 1.248 24 C 0.089 3.911 25 C 0.077 3.923 26 H 0.064 0.936 27 C -0.136 4.136 28 O -0.376 6.376 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.295 0.705 41 H 0.098 0.902 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.064 0.936 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.492 0.076 2.927 10.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.157 4.157 3 C 0.022 3.978 4 H 0.082 0.918 5 C -0.029 4.029 6 N -0.830 5.830 7 S 2.816 3.184 8 O -0.987 6.987 9 O -0.993 6.993 10 C -0.890 4.890 11 C -0.038 4.038 12 C -0.269 4.269 13 C -0.095 4.095 14 C -0.204 4.204 15 C 0.161 3.839 16 C -0.521 4.521 17 H 0.122 0.878 18 C -0.167 4.167 19 N -0.424 5.424 20 Si 0.770 3.230 21 H -0.172 1.172 22 H -0.187 1.187 23 H -0.172 1.172 24 C -0.037 4.037 25 C 0.017 3.983 26 H 0.082 0.918 27 C -0.194 4.194 28 O -0.295 6.295 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.130 0.870 40 H 0.106 0.894 41 H 0.116 0.884 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.083 0.917 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.761 0.240 2.470 11.043 hybrid contribution 1.242 -0.707 0.137 1.436 sum -9.519 -0.467 2.607 9.880 Atomic orbital electron populations 1.21646 0.93549 1.02393 1.02146 1.21595 0.98023 0.92588 1.03509 1.22593 0.92101 0.95674 0.87402 0.91806 1.22266 0.95245 0.82068 1.03343 1.57486 1.61528 1.23866 1.40083 1.00509 0.73484 0.71447 0.73004 1.93422 1.87705 1.70414 1.47120 1.93408 1.85364 1.33105 1.87440 1.30192 1.23772 1.00302 1.34755 1.20574 0.94590 0.96061 0.92572 1.20903 0.97344 0.97261 1.11358 1.21261 0.98914 0.93001 0.96355 1.21549 0.95184 0.97861 1.05761 1.17338 0.91212 0.90367 0.84948 1.20534 1.21003 0.94195 1.16368 0.87762 1.26631 0.93529 1.03302 0.93217 1.69817 1.29375 1.30976 1.12274 0.85595 0.79946 0.76777 0.80707 1.17199 1.18706 1.17181 1.22273 0.96449 0.97106 0.87836 1.22539 0.91997 0.83075 1.00642 0.91766 1.21737 1.02469 1.01256 0.93917 1.87889 1.79404 1.24035 1.38169 0.92439 0.91260 0.92524 0.89438 0.91144 0.88957 0.91346 0.86029 0.85374 0.85924 0.86980 0.89380 0.88383 0.91116 0.89148 0.91732 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.81 71.98 0.71 -2.07 16 2 C -0.12 -2.91 5.65 30.59 0.17 -2.74 16 3 C 0.08 2.42 2.77 30.69 0.09 2.50 16 4 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 5 C 0.10 3.50 4.36 86.36 0.38 3.88 16 6 N -0.99 -38.28 3.28 -511.62 -1.68 -39.96 16 7 S 2.72 121.85 5.10 -56.49 -0.29 121.56 16 8 O -1.00 -48.88 14.35 -128.00 -1.84 -50.72 16 9 O -1.00 -45.34 15.81 -128.00 -2.02 -47.37 16 10 C -0.80 -38.79 5.96 22.73 0.14 -38.66 16 11 C -0.02 -0.83 9.53 22.22 0.21 -0.61 16 12 C -0.25 -10.55 10.05 22.46 0.23 -10.33 16 13 C -0.08 -3.38 10.02 22.22 0.22 -3.16 16 14 C -0.18 -9.20 8.65 22.73 0.20 -9.00 16 15 C 0.17 8.58 5.53 -21.29 -0.12 8.46 16 16 C -0.49 -24.64 6.72 23.46 0.16 -24.48 16 17 H 0.10 5.26 4.10 -2.91 -0.01 5.24 16 18 C 0.05 2.41 5.23 85.26 0.45 2.85 16 19 N -0.80 -37.79 10.98 21.83 0.24 -37.55 16 20 Si 0.95 34.70 29.57 68.60 2.03 36.73 16 21 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 22 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 23 H -0.25 -8.30 7.11 99.48 0.71 -7.59 16 24 C 0.09 2.89 5.98 86.35 0.52 3.41 16 25 C 0.08 2.08 3.40 30.69 0.10 2.19 16 26 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 27 C -0.14 -2.73 9.57 71.98 0.69 -2.04 16 28 O -0.38 -10.99 9.58 -148.98 -1.43 -12.42 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.06 1.18 7.83 -2.39 -0.02 1.16 16 32 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.09 3.55 5.74 -2.39 -0.01 3.53 16 35 H 0.07 2.62 8.00 -2.38 -0.02 2.60 16 36 H 0.12 5.02 7.33 -2.91 -0.02 5.00 16 37 H 0.13 4.51 8.06 -2.91 -0.02 4.48 16 38 H 0.12 4.58 8.06 -2.91 -0.02 4.55 16 39 H 0.11 5.72 6.36 -2.91 -0.02 5.70 16 40 H 0.30 12.48 8.30 -92.71 -0.77 11.71 16 41 H 0.10 3.07 7.14 -2.39 -0.02 3.05 16 42 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -61.36 365.56 0.13 -61.23 By element: Atomic # 1 Polarization: 37.30 SS G_CDS: 0.99 Total: 38.29 kcal Atomic # 6 Polarization: -73.92 SS G_CDS: 4.13 Total: -69.79 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -1.44 Total: -77.51 kcal Atomic # 8 Polarization: -105.22 SS G_CDS: -5.29 Total: -110.50 kcal Atomic # 14 Polarization: 34.70 SS G_CDS: 2.03 Total: 36.73 kcal Atomic # 16 Polarization: 121.85 SS G_CDS: -0.29 Total: 121.56 kcal Total: -61.36 0.13 -61.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601342372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.258 kcal (2) G-P(sol) polarization free energy of solvation -61.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds