Wall clock time and date at job start Tue Mar 31 2020 22:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47261 * 2 1 4 4 H 1.08997 * 109.51390 * 54.89365 * 3 2 1 5 5 C 1.53295 * 109.51603 * 174.99862 * 3 2 1 6 6 N 1.47155 * 108.38769 * 172.22051 * 5 3 2 7 7 S 1.65598 * 120.97962 * 129.48682 * 6 5 3 8 8 O 1.42098 * 106.40092 * 209.86306 * 7 6 5 9 9 O 1.42100 * 106.40287 * 342.78204 * 7 6 5 10 10 C 1.76196 * 107.21896 * 96.32150 * 7 6 5 11 11 C 1.37645 * 120.12561 * 116.43676 * 10 7 6 12 12 C 1.38608 * 120.24618 * 179.70181 * 11 10 7 13 13 C 1.38660 * 120.50300 * 0.60107 * 12 11 10 14 14 C 1.37596 * 120.24747 * 359.67892 * 13 12 11 15 15 C 1.40689 * 120.13264 * 296.71369 * 10 7 6 16 16 C 1.41399 * 120.24235 * 0.02562 * 15 10 7 17 17 H 1.08006 * 120.00031 * 331.76974 * 16 15 10 18 18 C 1.39949 * 120.00013 * 151.77045 * 16 15 10 19 19 N 1.30824 * 119.99864 * 163.70714 * 18 16 15 20 20 Si 1.86797 * 119.99857 * 343.70176 * 18 16 15 21 21 H 1.48500 * 109.47105 * 95.05542 * 20 18 16 22 22 H 1.48506 * 109.46765 * 215.05383 * 20 18 16 23 23 H 1.48499 * 109.47287 * 335.05080 * 20 18 16 24 24 C 1.47140 * 118.03535 * 309.46804 * 6 5 3 25 25 C 1.53292 * 108.39100 * 50.53170 * 24 6 5 26 26 H 1.09005 * 109.51120 * 67.66954 * 25 24 6 27 27 C 1.52999 * 109.51731 * 187.77298 * 25 24 6 28 28 O 1.42961 * 109.21951 * 307.69994 * 25 24 6 29 29 H 1.09000 * 109.47138 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47175 * 300.00478 * 1 2 3 31 31 H 1.08997 * 109.46642 * 60.00262 * 1 2 3 32 32 H 1.09006 * 109.47178 * 119.99470 * 2 1 3 33 33 H 1.08998 * 109.47175 * 239.99522 * 2 1 3 34 34 H 1.09001 * 109.68215 * 291.94880 * 5 3 2 35 35 H 1.09005 * 109.67927 * 52.50021 * 5 3 2 36 36 H 1.08000 * 119.87688 * 0.02562 * 11 10 7 37 37 H 1.08000 * 119.74972 * 180.30185 * 12 11 10 38 38 H 1.08001 * 119.87291 * 179.70696 * 13 12 11 39 39 H 1.07991 * 120.12732 * 180.02562 * 14 13 12 40 40 H 0.96995 * 119.99733 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.68295 * 170.25705 * 24 6 5 42 42 H 1.09000 * 109.68706 * 290.77007 * 24 6 5 43 43 H 1.08997 * 109.46952 * 60.00412 * 27 25 24 44 44 H 1.09001 * 109.47013 * 179.97438 * 27 25 24 45 45 H 1.08997 * 109.47043 * 300.00263 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6043 1.9827 0.8405 5 6 3.5678 1.4454 0.1260 6 7 4.0465 2.8238 -0.0645 7 16 5.0852 3.5228 1.0194 8 8 4.8117 4.9170 0.9954 9 8 5.0189 2.7380 2.2022 10 6 6.7157 3.3246 0.3816 11 6 7.4627 4.4290 0.0395 12 6 8.7479 4.2762 -0.4566 13 6 9.2913 3.0118 -0.6259 14 6 8.5607 1.8935 -0.2960 15 6 7.2570 2.0368 0.2145 16 6 6.4966 0.8948 0.5565 17 1 5.7433 0.9587 1.3279 18 6 6.7201 -0.3184 -0.1045 19 7 6.2660 -1.4343 0.4053 20 14 7.6668 -0.3441 -1.7146 21 1 9.0971 -0.6372 -1.4432 22 1 7.1059 -1.3946 -2.6018 23 1 7.5499 0.9789 -2.3788 24 6 3.5754 3.5625 -1.2466 25 6 2.0473 3.4564 -1.3058 26 1 1.6116 4.0055 -0.4710 27 6 1.5446 4.0477 -2.6244 28 8 1.6675 2.0806 -1.2239 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.8933 -0.5139 -0.8899 34 1 3.8552 1.0904 1.1156 35 1 4.0003 0.7979 -0.6369 36 1 7.0478 5.4184 0.1631 37 1 9.3287 5.1484 -0.7179 38 1 10.2920 2.9044 -1.0177 39 1 8.9859 0.9097 -0.4282 40 1 6.4212 -2.2752 -0.0526 41 1 3.8679 4.6094 -1.1660 42 1 4.0091 3.1286 -2.1476 43 1 1.9791 3.4970 -3.4586 44 1 0.4580 3.9715 -2.6659 45 1 1.8385 5.0954 -2.6882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601342374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:12 Heat of formation + Delta-G solvation = -107.204425 kcal Electronic energy + Delta-G solvation = -29617.996313 eV Core-core repulsion = 25726.897914 eV Total energy + Delta-G solvation = -3891.098398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.28361 -37.91949 -36.50368 -35.01915 -34.58056 -34.26902 -33.83137 -31.27006 -30.77675 -30.15459 -27.99261 -25.63536 -25.41571 -23.19879 -22.10986 -21.26684 -21.24231 -20.52690 -18.22796 -17.77016 -17.31798 -16.58210 -16.45335 -15.62648 -15.43800 -14.98548 -14.50120 -14.36086 -14.28130 -13.91017 -13.70496 -13.64701 -13.37817 -12.94249 -12.84820 -12.37259 -12.32244 -12.22420 -12.01237 -11.82999 -11.72766 -11.51440 -11.35830 -11.31655 -11.11638 -11.04939 -10.92073 -10.81378 -10.78645 -10.71524 -10.47304 -10.08427 -9.97754 -9.79212 -9.50861 -9.29615 -8.37338 -8.18687 -7.89719 -7.27718 -4.94273 1.33432 2.03755 2.48212 2.89553 3.00113 3.09876 3.65851 3.71658 3.85130 4.18070 4.60090 4.80525 5.01956 5.08036 5.16526 5.21936 5.29297 5.34257 5.40858 5.47377 5.62003 5.68372 5.78016 5.81352 5.84172 5.85526 5.93512 5.98745 6.07778 6.12115 6.16234 6.22128 6.28459 6.33863 6.43911 6.55786 6.58207 6.62240 6.88773 7.02407 7.05718 7.24286 7.38003 7.46929 7.51438 7.77833 8.04945 8.25439 8.45671 9.69294 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011024 B = 0.006215 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.195552 B = 4503.971472 C = 5700.025925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C 0.080 3.920 4 H 0.058 0.942 5 C 0.102 3.898 6 N -0.996 5.996 7 S 2.703 3.297 8 O -0.993 6.993 9 O -0.966 6.966 10 C -0.772 4.772 11 C 0.017 3.983 12 C -0.260 4.260 13 C -0.043 4.043 14 C -0.236 4.236 15 C 0.164 3.836 16 C -0.454 4.454 17 H 0.127 0.873 18 C 0.091 3.909 19 N -0.772 5.772 20 Si 0.907 3.093 21 H -0.267 1.267 22 H -0.286 1.286 23 H -0.240 1.240 24 C 0.095 3.905 25 C 0.078 3.922 26 H 0.060 0.940 27 C -0.142 4.142 28 O -0.374 6.374 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.292 0.708 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.220 2.925 -5.453 9.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C 0.020 3.980 4 H 0.076 0.924 5 C -0.024 4.024 6 N -0.832 5.832 7 S 2.802 3.198 8 O -0.984 6.984 9 O -0.957 6.957 10 C -0.866 4.866 11 C -0.002 4.002 12 C -0.280 4.280 13 C -0.062 4.062 14 C -0.255 4.255 15 C 0.159 3.841 16 C -0.480 4.480 17 H 0.144 0.856 18 C -0.133 4.133 19 N -0.393 5.393 20 Si 0.733 3.267 21 H -0.194 1.194 22 H -0.213 1.213 23 H -0.163 1.163 24 C -0.032 4.032 25 C 0.019 3.981 26 H 0.078 0.922 27 C -0.200 4.200 28 O -0.293 6.293 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.127 0.873 35 H 0.099 0.901 36 H 0.131 0.869 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.113 0.887 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.676 2.940 -4.748 9.492 hybrid contribution 1.460 -0.361 -0.990 1.800 sum -6.216 2.578 -5.737 8.844 Atomic orbital electron populations 1.21695 0.95514 1.01192 1.01934 1.21499 0.96204 0.94091 1.03493 1.22565 0.94488 0.94091 0.86819 0.92439 1.22222 0.92928 0.82239 1.04987 1.57703 1.62202 1.23667 1.39597 1.01067 0.73668 0.71848 0.73167 1.93438 1.85565 1.32189 1.87187 1.93500 1.87170 1.70597 1.44405 1.29871 1.22870 0.99695 1.34212 1.20380 0.93491 0.96054 0.90315 1.20489 0.97484 0.96084 1.13989 1.20827 0.97443 0.93212 0.94710 1.21174 0.96144 0.97152 1.11057 1.17057 0.90778 0.90654 0.85599 1.20381 1.18356 0.91646 1.17652 0.85579 1.26213 0.93369 0.94401 0.99354 1.69659 1.33740 0.99431 1.36493 0.86389 0.79301 0.79974 0.81016 1.19356 1.21290 1.16327 1.22024 0.94806 0.97313 0.89024 1.22360 0.93716 0.83461 0.98597 0.92189 1.21722 1.01736 1.00512 0.95995 1.87878 1.79756 1.23351 1.38327 0.92954 0.93126 0.92195 0.89963 0.90850 0.87279 0.90130 0.86935 0.88093 0.88283 0.87732 0.89666 0.88741 0.90890 0.91628 0.91817 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.81 37.16 0.36 -1.34 16 2 C -0.11 -1.58 5.64 -26.73 -0.15 -1.73 16 3 C 0.08 1.25 2.78 -26.58 -0.07 1.17 16 4 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 5 C 0.10 1.88 4.27 -3.53 -0.02 1.86 16 6 N -1.00 -18.83 3.27 -113.07 -0.37 -19.20 16 7 S 2.70 58.82 5.11 -107.50 -0.55 58.27 16 8 O -0.99 -21.85 15.78 -57.17 -0.90 -22.76 16 9 O -0.97 -23.44 14.51 -57.17 -0.83 -24.27 16 10 C -0.77 -17.82 5.96 -38.87 -0.23 -18.05 16 11 C 0.02 0.38 9.53 -39.66 -0.38 0.00 16 12 C -0.26 -5.29 10.05 -39.29 -0.39 -5.68 16 13 C -0.04 -0.90 10.02 -39.66 -0.40 -1.30 16 14 C -0.24 -5.44 7.06 -38.87 -0.27 -5.71 16 15 C 0.16 3.99 5.17 -106.83 -0.55 3.44 16 16 C -0.45 -11.20 7.17 -37.74 -0.27 -11.47 16 17 H 0.13 3.27 4.04 -52.48 -0.21 3.06 16 18 C 0.09 2.13 5.44 -17.34 -0.09 2.04 16 19 N -0.77 -18.08 13.93 55.55 0.77 -17.31 16 20 Si 0.91 18.96 24.42 -169.99 -4.15 14.81 16 21 H -0.27 -5.47 6.70 56.52 0.38 -5.09 16 22 H -0.29 -5.73 7.11 56.52 0.40 -5.32 16 23 H -0.24 -5.18 6.70 56.52 0.38 -4.81 16 24 C 0.09 1.51 5.98 -3.54 -0.02 1.49 16 25 C 0.08 1.10 3.40 -26.58 -0.09 1.01 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 27 C -0.14 -1.54 9.57 37.16 0.36 -1.19 16 28 O -0.37 -5.75 9.58 -35.23 -0.34 -6.09 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.72 7.83 -51.93 -0.41 0.31 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.11 2.19 5.61 -51.93 -0.29 1.90 16 35 H 0.08 1.56 7.91 -51.93 -0.41 1.15 16 36 H 0.11 2.20 7.33 -52.49 -0.38 1.81 16 37 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 39 H 0.11 2.34 4.36 -52.49 -0.23 2.11 16 40 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 41 H 0.09 1.43 7.10 -51.93 -0.37 1.06 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -28.34 358.96 -9.74 -38.07 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -6.56 Total: 8.51 kcal Atomic # 6 Polarization: -33.23 SS G_CDS: -2.22 Total: -35.46 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.40 Total: -36.50 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -2.07 Total: -53.11 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.15 Total: 14.81 kcal Atomic # 16 Polarization: 58.82 SS G_CDS: -0.55 Total: 58.27 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.34 -9.74 -38.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601342374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.130 kcal (2) G-P(sol) polarization free energy of solvation -28.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds