Wall clock time and date at job start Tue Mar 31 2020 22:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47261 * 2 1 4 4 H 1.08997 * 109.51390 * 54.89365 * 3 2 1 5 5 C 1.53295 * 109.51603 * 174.99862 * 3 2 1 6 6 N 1.47155 * 108.38769 * 172.22051 * 5 3 2 7 7 S 1.65598 * 120.97962 * 129.48682 * 6 5 3 8 8 O 1.42098 * 106.40092 * 209.86306 * 7 6 5 9 9 O 1.42100 * 106.40287 * 342.78204 * 7 6 5 10 10 C 1.76196 * 107.21896 * 96.32150 * 7 6 5 11 11 C 1.37645 * 120.12561 * 116.43676 * 10 7 6 12 12 C 1.38608 * 120.24618 * 179.70181 * 11 10 7 13 13 C 1.38660 * 120.50300 * 0.60107 * 12 11 10 14 14 C 1.37596 * 120.24747 * 359.67892 * 13 12 11 15 15 C 1.40689 * 120.13264 * 296.71369 * 10 7 6 16 16 C 1.41399 * 120.24235 * 0.02562 * 15 10 7 17 17 H 1.08006 * 120.00031 * 331.76974 * 16 15 10 18 18 C 1.39949 * 120.00013 * 151.77045 * 16 15 10 19 19 N 1.30824 * 119.99864 * 163.70714 * 18 16 15 20 20 Si 1.86797 * 119.99857 * 343.70176 * 18 16 15 21 21 H 1.48500 * 109.47105 * 95.05542 * 20 18 16 22 22 H 1.48506 * 109.46765 * 215.05383 * 20 18 16 23 23 H 1.48499 * 109.47287 * 335.05080 * 20 18 16 24 24 C 1.47140 * 118.03535 * 309.46804 * 6 5 3 25 25 C 1.53292 * 108.39100 * 50.53170 * 24 6 5 26 26 H 1.09005 * 109.51120 * 67.66954 * 25 24 6 27 27 C 1.52999 * 109.51731 * 187.77298 * 25 24 6 28 28 O 1.42961 * 109.21951 * 307.69994 * 25 24 6 29 29 H 1.09000 * 109.47138 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47175 * 300.00478 * 1 2 3 31 31 H 1.08997 * 109.46642 * 60.00262 * 1 2 3 32 32 H 1.09006 * 109.47178 * 119.99470 * 2 1 3 33 33 H 1.08998 * 109.47175 * 239.99522 * 2 1 3 34 34 H 1.09001 * 109.68215 * 291.94880 * 5 3 2 35 35 H 1.09005 * 109.67927 * 52.50021 * 5 3 2 36 36 H 1.08000 * 119.87688 * 0.02562 * 11 10 7 37 37 H 1.08000 * 119.74972 * 180.30185 * 12 11 10 38 38 H 1.08001 * 119.87291 * 179.70696 * 13 12 11 39 39 H 1.07991 * 120.12732 * 180.02562 * 14 13 12 40 40 H 0.96995 * 119.99733 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.68295 * 170.25705 * 24 6 5 42 42 H 1.09000 * 109.68706 * 290.77007 * 24 6 5 43 43 H 1.08997 * 109.46952 * 60.00412 * 27 25 24 44 44 H 1.09001 * 109.47013 * 179.97438 * 27 25 24 45 45 H 1.08997 * 109.47043 * 300.00263 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6043 1.9827 0.8405 5 6 3.5678 1.4454 0.1260 6 7 4.0465 2.8238 -0.0645 7 16 5.0852 3.5228 1.0194 8 8 4.8117 4.9170 0.9954 9 8 5.0189 2.7380 2.2022 10 6 6.7157 3.3246 0.3816 11 6 7.4627 4.4290 0.0395 12 6 8.7479 4.2762 -0.4566 13 6 9.2913 3.0118 -0.6259 14 6 8.5607 1.8935 -0.2960 15 6 7.2570 2.0368 0.2145 16 6 6.4966 0.8948 0.5565 17 1 5.7433 0.9587 1.3279 18 6 6.7201 -0.3184 -0.1045 19 7 6.2660 -1.4343 0.4053 20 14 7.6668 -0.3441 -1.7146 21 1 9.0971 -0.6372 -1.4432 22 1 7.1059 -1.3946 -2.6018 23 1 7.5499 0.9789 -2.3788 24 6 3.5754 3.5625 -1.2466 25 6 2.0473 3.4564 -1.3058 26 1 1.6116 4.0055 -0.4710 27 6 1.5446 4.0477 -2.6244 28 8 1.6675 2.0806 -1.2239 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.8933 -0.5139 -0.8899 34 1 3.8552 1.0904 1.1156 35 1 4.0003 0.7979 -0.6369 36 1 7.0478 5.4184 0.1631 37 1 9.3287 5.1484 -0.7179 38 1 10.2920 2.9044 -1.0177 39 1 8.9859 0.9097 -0.4282 40 1 6.4212 -2.2752 -0.0526 41 1 3.8679 4.6094 -1.1660 42 1 4.0091 3.1286 -2.1476 43 1 1.9791 3.4970 -3.4586 44 1 0.4580 3.9715 -2.6659 45 1 1.8385 5.0954 -2.6882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601342374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:11 Heat of formation + Delta-G solvation = -125.241253 kcal Electronic energy + Delta-G solvation = -29618.778448 eV Core-core repulsion = 25726.897914 eV Total energy + Delta-G solvation = -3891.880534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.55546 -39.62526 -38.27694 -36.81679 -35.98189 -35.65414 -35.34911 -32.53020 -32.32233 -31.84894 -29.21834 -27.23391 -26.79577 -24.43624 -23.79303 -22.97760 -22.38798 -21.80514 -19.88207 -19.52295 -18.93269 -18.15005 -17.79524 -17.23070 -17.03731 -16.31568 -15.99497 -15.94642 -15.63088 -15.40837 -15.32672 -15.10755 -14.66386 -14.54968 -14.08255 -14.03165 -13.62153 -13.48255 -13.36967 -13.17918 -13.10998 -13.04660 -13.02310 -12.75002 -12.73044 -12.53934 -12.48815 -12.22501 -12.19343 -11.90061 -11.80424 -11.72285 -11.31916 -11.27454 -11.15742 -10.93631 -10.01922 -9.66868 -9.63087 -9.03147 -6.75178 -0.34759 0.31658 0.75924 1.20846 1.33952 1.42045 2.01875 2.07484 2.45703 2.68467 2.87246 3.28364 3.44952 3.78681 3.82251 3.96799 4.04854 4.11526 4.16347 4.27013 4.27913 4.32462 4.44469 4.47446 4.59607 4.64802 4.67585 4.77690 4.86965 4.87831 4.90486 4.97856 5.08728 5.13014 5.14881 5.18991 5.29500 5.33887 5.36045 5.46742 5.48803 5.62468 5.68759 5.80756 6.04753 6.23348 6.25920 6.49956 6.66468 7.99362 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011024 B = 0.006215 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.195552 B = 4503.971472 C = 5700.025925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 C 0.085 3.915 4 H 0.061 0.939 5 C 0.107 3.893 6 N -0.994 5.994 7 S 2.713 3.287 8 O -0.998 6.998 9 O -0.999 6.999 10 C -0.789 4.789 11 C 0.003 3.997 12 C -0.252 4.252 13 C -0.041 4.041 14 C -0.261 4.261 15 C 0.146 3.854 16 C -0.479 4.479 17 H 0.102 0.898 18 C 0.066 3.934 19 N -0.800 5.800 20 Si 0.950 3.050 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.251 1.251 24 C 0.085 3.915 25 C 0.074 3.926 26 H 0.063 0.937 27 C -0.135 4.135 28 O -0.375 6.375 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.130 0.870 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.107 0.893 40 H 0.302 0.698 41 H 0.103 0.897 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.063 4.171 -7.412 11.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C 0.025 3.975 4 H 0.079 0.921 5 C -0.019 4.019 6 N -0.832 5.832 7 S 2.812 3.188 8 O -0.988 6.988 9 O -0.990 6.990 10 C -0.883 4.883 11 C -0.017 4.017 12 C -0.271 4.271 13 C -0.059 4.059 14 C -0.281 4.281 15 C 0.142 3.858 16 C -0.506 4.506 17 H 0.120 0.880 18 C -0.155 4.155 19 N -0.423 5.423 20 Si 0.774 3.226 21 H -0.183 1.183 22 H -0.199 1.199 23 H -0.175 1.175 24 C -0.040 4.040 25 C 0.015 3.985 26 H 0.081 0.919 27 C -0.193 4.193 28 O -0.295 6.295 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.148 0.852 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.121 0.879 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.513 4.190 -6.703 10.906 hybrid contribution 1.458 -0.606 -0.366 1.621 sum -6.055 3.584 -7.069 9.974 Atomic orbital electron populations 1.21639 0.93432 1.02343 1.02164 1.21516 0.97949 0.92661 1.03129 1.22528 0.92170 0.95475 0.87302 0.92124 1.22133 0.95010 0.81705 1.03044 1.57519 1.61482 1.23912 1.40238 1.00620 0.73671 0.71505 0.73010 1.93415 1.85659 1.32352 1.87416 1.93454 1.87594 1.71297 1.46666 1.30124 1.23887 1.00033 1.34264 1.20737 0.94230 0.96314 0.90406 1.20989 0.97008 0.97357 1.11781 1.21289 0.98818 0.92572 0.93248 1.21345 0.96038 0.98328 1.12363 1.17279 0.91551 0.90909 0.86108 1.20296 1.18975 0.92895 1.18419 0.88039 1.26689 0.93857 0.93845 1.01152 1.69662 1.34856 1.00022 1.37731 0.85731 0.78944 0.79578 0.78376 1.18343 1.19920 1.17465 1.22354 0.96408 0.97404 0.87821 1.22575 0.92223 0.82987 1.00726 0.91947 1.21735 1.02425 1.01340 0.93796 1.87888 1.79457 1.24172 1.37939 0.91378 0.92532 0.92253 0.90269 0.91366 0.89732 0.91633 0.85229 0.84313 0.84497 0.87587 0.88681 0.87866 0.90500 0.91525 0.90579 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.81 71.98 0.71 -2.35 16 2 C -0.11 -3.16 5.64 30.59 0.17 -2.99 16 3 C 0.08 2.68 2.78 30.69 0.09 2.77 16 4 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 5 C 0.11 4.13 4.27 86.35 0.37 4.50 16 6 N -0.99 -38.42 3.27 -511.63 -1.67 -40.09 16 7 S 2.71 120.82 5.11 -56.49 -0.29 120.53 16 8 O -1.00 -43.81 15.78 -128.00 -2.02 -45.83 16 9 O -1.00 -50.97 14.51 -128.00 -1.86 -52.82 16 10 C -0.79 -36.60 5.96 22.73 0.14 -36.47 16 11 C 0.00 0.12 9.53 22.22 0.21 0.33 16 12 C -0.25 -9.41 10.05 22.46 0.23 -9.18 16 13 C -0.04 -1.59 10.02 22.22 0.22 -1.36 16 14 C -0.26 -11.81 7.06 22.73 0.16 -11.65 16 15 C 0.15 7.21 5.17 -21.29 -0.11 7.10 16 16 C -0.48 -24.61 7.17 23.46 0.17 -24.44 16 17 H 0.10 5.63 4.04 -2.91 -0.01 5.62 16 18 C 0.07 3.18 5.44 85.26 0.46 3.64 16 19 N -0.80 -38.70 13.93 21.83 0.30 -38.40 16 20 Si 0.95 38.81 24.42 68.60 1.68 40.48 16 21 H -0.26 -10.04 6.70 99.48 0.67 -9.37 16 22 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 23 H -0.25 -10.59 6.70 99.48 0.67 -9.93 16 24 C 0.09 2.67 5.98 86.36 0.52 3.19 16 25 C 0.07 1.99 3.40 30.69 0.10 2.10 16 26 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 27 C -0.14 -2.60 9.57 71.98 0.69 -1.91 16 28 O -0.38 -11.23 9.58 -148.98 -1.43 -12.65 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.32 7.83 -2.39 -0.02 1.30 16 32 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.08 3.69 5.61 -2.39 -0.01 3.67 16 35 H 0.07 2.69 7.91 -2.38 -0.02 2.67 16 36 H 0.13 4.81 7.33 -2.91 -0.02 4.79 16 37 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 38 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 39 H 0.11 4.67 4.36 -2.91 -0.01 4.65 16 40 H 0.30 12.99 8.30 -92.71 -0.77 12.22 16 41 H 0.10 3.02 7.10 -2.39 -0.02 3.00 16 42 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -61.78 358.96 -0.25 -62.03 By element: Atomic # 1 Polarization: 32.56 SS G_CDS: 0.92 Total: 33.48 kcal Atomic # 6 Polarization: -70.84 SS G_CDS: 4.12 Total: -66.72 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -1.37 Total: -78.49 kcal Atomic # 8 Polarization: -106.00 SS G_CDS: -5.30 Total: -111.31 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 1.68 Total: 40.48 kcal Atomic # 16 Polarization: 120.82 SS G_CDS: -0.29 Total: 120.53 kcal Total: -61.78 -0.25 -62.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601342374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.216 kcal (2) G-P(sol) polarization free energy of solvation -61.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds