Wall clock time and date at job start Tue Mar 31 2020 22:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46948 * 2 1 4 4 H 1.09004 * 109.55226 * 303.29666 * 3 2 1 5 5 C 1.53297 * 109.50948 * 183.17621 * 3 2 1 6 6 N 1.47155 * 108.38202 * 187.76871 * 5 3 2 7 7 S 1.65592 * 120.98327 * 230.50542 * 6 5 3 8 8 O 1.42100 * 106.40575 * 343.72998 * 7 6 5 9 9 O 1.42096 * 106.40413 * 210.80549 * 7 6 5 10 10 C 1.76205 * 107.21734 * 97.26776 * 7 6 5 11 11 C 1.37637 * 120.12760 * 113.35635 * 10 7 6 12 12 C 1.38616 * 120.24805 * 179.97438 * 11 10 7 13 13 C 1.38662 * 120.50026 * 0.02562 * 12 11 10 14 14 C 1.37591 * 120.24907 * 359.97438 * 13 12 11 15 15 C 1.40699 * 120.12679 * 293.34154 * 10 7 6 16 16 C 1.41390 * 120.24464 * 359.97438 * 15 10 7 17 17 H 1.08007 * 120.00056 * 335.15470 * 16 15 10 18 18 C 1.39949 * 120.00257 * 155.15322 * 16 15 10 19 19 N 1.30830 * 119.99536 * 345.25801 * 18 16 15 20 20 Si 1.86793 * 120.00399 * 165.26217 * 18 16 15 21 21 H 1.48509 * 109.47097 * 1.29132 * 20 18 16 22 22 H 1.48502 * 109.47218 * 121.28982 * 20 18 16 23 23 H 1.48495 * 109.47299 * 241.29082 * 20 18 16 24 24 C 1.47156 * 118.03424 * 50.79030 * 6 5 3 25 25 C 1.53721 * 108.15935 * 309.15218 * 24 6 5 26 26 H 1.08992 * 109.44358 * 172.37436 * 25 24 6 27 27 C 1.53001 * 109.69800 * 292.55204 * 25 24 6 28 28 O 1.42956 * 109.51819 * 63.42599 * 3 2 1 29 29 H 1.09006 * 109.47035 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47303 * 300.00009 * 1 2 3 31 31 H 1.09000 * 109.47044 * 60.00559 * 1 2 3 32 32 H 1.08999 * 109.47125 * 239.99587 * 2 1 3 33 33 H 1.08998 * 109.46958 * 119.99984 * 2 1 3 34 34 H 1.09000 * 109.68166 * 68.04724 * 5 3 2 35 35 H 1.09001 * 109.71170 * 307.51120 * 5 3 2 36 36 H 1.07999 * 119.87714 * 0.26278 * 11 10 7 37 37 H 1.07999 * 119.74977 * 180.02562 * 12 11 10 38 38 H 1.07998 * 119.87244 * 179.97438 * 13 12 11 39 39 H 1.08002 * 120.13128 * 179.97438 * 14 13 12 40 40 H 0.97001 * 119.99458 * 179.97438 * 19 18 16 41 41 H 1.08993 * 109.68640 * 68.93030 * 24 6 5 42 42 H 1.09000 * 109.67935 * 189.48989 * 24 6 5 43 43 H 1.08999 * 109.46877 * 179.76718 * 27 25 24 44 44 H 1.08996 * 109.47029 * 299.76332 * 27 25 24 45 45 H 1.08999 * 109.47508 * 59.76444 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6299 1.9744 -0.8586 5 6 3.5708 1.4443 -0.0801 6 7 4.0438 2.8248 0.1098 7 16 5.1148 3.5122 -0.9497 8 8 5.6832 2.4444 -1.6953 9 8 5.8909 4.4327 -0.1951 10 6 4.1761 4.4716 -2.0913 11 6 4.2964 5.8426 -2.1042 12 6 3.5595 6.5998 -3.0016 13 6 2.6937 5.9871 -3.8948 14 6 2.5575 4.6179 -3.8996 15 6 3.3009 3.8391 -2.9932 16 6 3.1697 2.4313 -2.9896 17 1 3.9758 1.8147 -2.6199 18 6 1.9955 1.8366 -3.4651 19 7 0.9202 2.5609 -3.6404 20 14 1.9634 0.0089 -3.8492 21 1 3.2883 -0.5856 -3.5384 22 1 0.9190 -0.6518 -3.0257 23 1 1.6574 -0.1891 -5.2887 24 6 3.5419 3.5741 1.2725 25 6 2.0082 3.4703 1.2837 26 1 1.6221 3.9015 2.2072 27 6 1.4314 4.2275 0.0858 28 8 1.6308 2.0937 1.2051 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8878 1.0787 -1.0568 35 1 3.9806 0.8050 0.7019 36 1 4.9709 6.3301 -1.4159 37 1 3.6604 7.6750 -3.0050 38 1 2.1242 6.5869 -4.5892 39 1 1.8824 4.1427 -4.5958 40 1 0.1064 2.1488 -3.9703 41 1 3.9482 3.1457 2.1887 42 1 3.8396 4.6195 1.1919 43 1 0.3443 4.1481 0.0950 44 1 1.7195 5.2769 0.1464 45 1 1.8194 3.7969 -0.8374 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601342375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:16 Heat of formation + Delta-G solvation = -103.139332 kcal Electronic energy + Delta-G solvation = -30872.419786 eV Core-core repulsion = 26981.497663 eV Total energy + Delta-G solvation = -3890.922123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -39.35236 -37.65610 -36.45116 -34.96629 -34.43393 -34.16544 -33.71541 -30.70453 -30.32099 -29.58470 -27.99717 -25.61448 -25.43600 -23.46012 -21.75717 -21.51069 -21.19967 -19.33474 -18.21159 -17.76658 -17.24760 -16.29449 -16.06924 -15.61614 -15.30148 -15.03810 -14.46417 -14.23769 -14.07925 -13.86897 -13.37701 -13.34886 -13.22269 -13.12180 -12.84302 -12.15247 -12.04493 -11.78742 -11.67206 -11.50311 -11.43579 -11.31186 -11.28711 -11.27195 -11.20278 -10.97260 -10.78856 -10.70184 -10.64500 -10.62702 -10.51034 -9.97879 -9.67250 -9.64816 -9.45831 -9.14357 -8.18944 -8.05205 -7.69039 -7.16884 -4.86544 1.40966 2.27800 2.63732 2.89283 2.95910 3.01583 3.66387 3.75183 4.13317 4.28389 4.69047 4.99883 5.11785 5.25717 5.27910 5.45093 5.46365 5.48640 5.60865 5.63849 5.79267 5.89818 5.96378 5.99760 6.07271 6.08098 6.18276 6.19013 6.25599 6.32431 6.36302 6.38093 6.50298 6.60942 6.66795 6.73434 6.89365 6.97706 7.04296 7.15986 7.27149 7.46428 7.62560 7.67602 7.76455 7.87295 8.27406 8.41070 8.59000 9.73844 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010306 B = 0.008192 C = 0.006313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.200356 B = 3417.297777 C = 4433.906311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C 0.068 3.932 4 H 0.098 0.902 5 C 0.097 3.903 6 N -0.994 5.994 7 S 2.700 3.300 8 O -0.972 6.972 9 O -0.994 6.994 10 C -0.777 4.777 11 C -0.001 4.001 12 C -0.249 4.249 13 C -0.075 4.075 14 C -0.161 4.161 15 C 0.192 3.808 16 C -0.472 4.472 17 H 0.115 0.885 18 C 0.085 3.915 19 N -0.768 5.768 20 Si 0.884 3.116 21 H -0.247 1.247 22 H -0.259 1.259 23 H -0.267 1.267 24 C 0.101 3.899 25 C 0.080 3.920 26 H 0.100 0.900 27 C -0.191 4.191 28 O -0.375 6.375 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.062 0.938 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.127 0.873 40 H 0.288 0.712 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.061 -2.511 5.575 6.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C 0.009 3.991 4 H 0.116 0.884 5 C -0.029 4.029 6 N -0.830 5.830 7 S 2.799 3.201 8 O -0.963 6.963 9 O -0.985 6.985 10 C -0.873 4.873 11 C -0.021 4.021 12 C -0.269 4.269 13 C -0.094 4.094 14 C -0.181 4.181 15 C 0.188 3.812 16 C -0.500 4.500 17 H 0.132 0.868 18 C -0.137 4.137 19 N -0.390 5.390 20 Si 0.707 3.293 21 H -0.170 1.170 22 H -0.183 1.183 23 H -0.192 1.192 24 C -0.025 4.025 25 C 0.020 3.980 26 H 0.118 0.882 27 C -0.249 4.249 28 O -0.294 6.294 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.126 0.874 35 H 0.081 0.919 36 H 0.124 0.876 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.145 0.855 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.469 -2.769 5.722 6.819 hybrid contribution -0.733 -0.086 -0.840 1.118 sum -3.203 -2.855 4.882 6.499 Atomic orbital electron populations 1.21666 0.95350 1.00826 1.02418 1.21517 0.96821 0.94871 1.02159 1.22653 0.93352 0.93728 0.89379 0.88432 1.22152 0.95183 0.82051 1.03496 1.57739 1.64517 1.22030 1.38701 1.01155 0.73131 0.72980 0.72790 1.93468 1.76077 1.55452 1.71264 1.93438 1.68062 1.65082 1.71921 1.29774 1.29105 1.05738 1.22679 1.20209 0.94610 0.91986 0.95300 1.20475 1.05243 0.97508 1.03685 1.20899 0.96380 0.95268 0.96898 1.21575 1.03114 0.92464 1.00916 1.16943 0.85858 0.92497 0.85943 1.20591 1.01527 0.92267 1.35585 0.86786 1.25938 0.94635 1.01135 0.92011 1.69802 1.01195 1.38299 1.29737 0.86601 0.80941 0.81906 0.79874 1.16976 1.18319 1.19205 1.22027 0.94859 0.96877 0.88771 1.22528 0.93264 0.82825 0.99335 0.88199 1.22489 1.01085 1.00564 1.00721 1.87865 1.78693 1.22803 1.40049 0.93374 0.92049 0.92701 0.91001 0.91465 0.87380 0.91945 0.87628 0.88854 0.88974 0.85513 0.90114 0.91153 0.89214 0.92642 0.92166 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.80 37.16 0.36 -1.71 16 2 C -0.12 -1.74 5.66 -26.73 -0.15 -1.89 16 3 C 0.07 1.16 2.34 -26.58 -0.06 1.10 16 4 H 0.10 1.90 4.47 -51.93 -0.23 1.67 16 5 C 0.10 1.72 5.01 -3.53 -0.02 1.71 16 6 N -0.99 -18.60 2.84 -112.81 -0.32 -18.92 16 7 S 2.70 58.76 5.08 -107.50 -0.55 58.21 16 8 O -0.97 -23.17 14.48 -57.17 -0.83 -24.00 16 9 O -0.99 -22.53 16.02 -57.17 -0.92 -23.45 16 10 C -0.78 -17.72 5.54 -38.87 -0.22 -17.94 16 11 C 0.00 -0.02 9.54 -39.66 -0.38 -0.40 16 12 C -0.25 -5.23 10.05 -39.29 -0.39 -5.62 16 13 C -0.08 -1.62 10.02 -39.66 -0.40 -2.02 16 14 C -0.16 -3.75 8.70 -38.87 -0.34 -4.08 16 15 C 0.19 4.54 4.47 -106.82 -0.48 4.07 16 16 C -0.47 -10.83 6.22 -37.74 -0.23 -11.07 16 17 H 0.11 2.68 3.46 -52.48 -0.18 2.49 16 18 C 0.08 1.81 4.27 -17.34 -0.07 1.73 16 19 N -0.77 -16.44 10.80 55.55 0.60 -15.84 16 20 Si 0.88 16.34 28.24 -169.99 -4.80 11.54 16 21 H -0.25 -4.63 7.11 56.52 0.40 -4.23 16 22 H -0.26 -4.43 7.03 56.52 0.40 -4.03 16 23 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 24 C 0.10 1.62 5.97 -3.31 -0.02 1.60 16 25 C 0.08 1.24 3.93 -26.36 -0.10 1.14 16 26 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 27 C -0.19 -3.34 8.82 37.16 0.33 -3.02 16 28 O -0.37 -6.26 9.70 -35.23 -0.34 -6.60 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.87 7.78 -51.93 -0.40 0.46 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.07 6.64 -51.93 -0.34 0.73 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.11 2.07 4.81 -51.93 -0.25 1.82 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.11 2.16 7.32 -52.49 -0.38 1.77 16 37 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.13 2.98 6.07 -52.49 -0.32 2.67 16 40 H 0.29 5.62 8.30 -40.82 -0.34 5.28 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.09 1.41 7.45 -51.93 -0.39 1.02 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.10 1.95 4.46 -51.93 -0.23 1.72 16 LS Contribution 350.76 15.07 5.29 5.29 Total: -1.00 -26.40 350.76 -10.14 -36.54 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -6.10 Total: 13.62 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: -2.17 Total: -36.39 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.28 Total: -34.76 kcal Atomic # 8 Polarization: -51.96 SS G_CDS: -2.09 Total: -54.05 kcal Atomic # 14 Polarization: 16.34 SS G_CDS: -4.80 Total: 11.54 kcal Atomic # 16 Polarization: 58.76 SS G_CDS: -0.55 Total: 58.21 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -26.40 -10.14 -36.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601342375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.600 kcal (2) G-P(sol) polarization free energy of solvation -26.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds