Wall clock time and date at job start Tue Mar 31 2020 22:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46948 * 2 1 4 4 H 1.09004 * 109.55226 * 303.29666 * 3 2 1 5 5 C 1.53297 * 109.50948 * 183.17621 * 3 2 1 6 6 N 1.47155 * 108.38202 * 187.76871 * 5 3 2 7 7 S 1.65592 * 120.98327 * 230.50542 * 6 5 3 8 8 O 1.42100 * 106.40575 * 343.72998 * 7 6 5 9 9 O 1.42096 * 106.40413 * 210.80549 * 7 6 5 10 10 C 1.76205 * 107.21734 * 97.26776 * 7 6 5 11 11 C 1.37637 * 120.12760 * 113.35635 * 10 7 6 12 12 C 1.38616 * 120.24805 * 179.97438 * 11 10 7 13 13 C 1.38662 * 120.50026 * 0.02562 * 12 11 10 14 14 C 1.37591 * 120.24907 * 359.97438 * 13 12 11 15 15 C 1.40699 * 120.12679 * 293.34154 * 10 7 6 16 16 C 1.41390 * 120.24464 * 359.97438 * 15 10 7 17 17 H 1.08007 * 120.00056 * 335.15470 * 16 15 10 18 18 C 1.39949 * 120.00257 * 155.15322 * 16 15 10 19 19 N 1.30830 * 119.99536 * 345.25801 * 18 16 15 20 20 Si 1.86793 * 120.00399 * 165.26217 * 18 16 15 21 21 H 1.48509 * 109.47097 * 1.29132 * 20 18 16 22 22 H 1.48502 * 109.47218 * 121.28982 * 20 18 16 23 23 H 1.48495 * 109.47299 * 241.29082 * 20 18 16 24 24 C 1.47156 * 118.03424 * 50.79030 * 6 5 3 25 25 C 1.53721 * 108.15935 * 309.15218 * 24 6 5 26 26 H 1.08992 * 109.44358 * 172.37436 * 25 24 6 27 27 C 1.53001 * 109.69800 * 292.55204 * 25 24 6 28 28 O 1.42956 * 109.51819 * 63.42599 * 3 2 1 29 29 H 1.09006 * 109.47035 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47303 * 300.00009 * 1 2 3 31 31 H 1.09000 * 109.47044 * 60.00559 * 1 2 3 32 32 H 1.08999 * 109.47125 * 239.99587 * 2 1 3 33 33 H 1.08998 * 109.46958 * 119.99984 * 2 1 3 34 34 H 1.09000 * 109.68166 * 68.04724 * 5 3 2 35 35 H 1.09001 * 109.71170 * 307.51120 * 5 3 2 36 36 H 1.07999 * 119.87714 * 0.26278 * 11 10 7 37 37 H 1.07999 * 119.74977 * 180.02562 * 12 11 10 38 38 H 1.07998 * 119.87244 * 179.97438 * 13 12 11 39 39 H 1.08002 * 120.13128 * 179.97438 * 14 13 12 40 40 H 0.97001 * 119.99458 * 179.97438 * 19 18 16 41 41 H 1.08993 * 109.68640 * 68.93030 * 24 6 5 42 42 H 1.09000 * 109.67935 * 189.48989 * 24 6 5 43 43 H 1.08999 * 109.46877 * 179.76718 * 27 25 24 44 44 H 1.08996 * 109.47029 * 299.76332 * 27 25 24 45 45 H 1.08999 * 109.47508 * 59.76444 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6299 1.9744 -0.8586 5 6 3.5708 1.4443 -0.0801 6 7 4.0438 2.8248 0.1098 7 16 5.1148 3.5122 -0.9497 8 8 5.6832 2.4444 -1.6953 9 8 5.8909 4.4327 -0.1951 10 6 4.1761 4.4716 -2.0913 11 6 4.2964 5.8426 -2.1042 12 6 3.5595 6.5998 -3.0016 13 6 2.6937 5.9871 -3.8948 14 6 2.5575 4.6179 -3.8996 15 6 3.3009 3.8391 -2.9932 16 6 3.1697 2.4313 -2.9896 17 1 3.9758 1.8147 -2.6199 18 6 1.9955 1.8366 -3.4651 19 7 0.9202 2.5609 -3.6404 20 14 1.9634 0.0089 -3.8492 21 1 3.2883 -0.5856 -3.5384 22 1 0.9190 -0.6518 -3.0257 23 1 1.6574 -0.1891 -5.2887 24 6 3.5419 3.5741 1.2725 25 6 2.0082 3.4703 1.2837 26 1 1.6221 3.9015 2.2072 27 6 1.4314 4.2275 0.0858 28 8 1.6308 2.0937 1.2051 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8878 1.0787 -1.0568 35 1 3.9806 0.8050 0.7019 36 1 4.9709 6.3301 -1.4159 37 1 3.6604 7.6750 -3.0050 38 1 2.1242 6.5869 -4.5892 39 1 1.8824 4.1427 -4.5958 40 1 0.1064 2.1488 -3.9703 41 1 3.9482 3.1457 2.1887 42 1 3.8396 4.6195 1.1919 43 1 0.3443 4.1481 0.0950 44 1 1.7195 5.2769 0.1464 45 1 1.8194 3.7969 -0.8374 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601342375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:15 Heat of formation + Delta-G solvation = -118.360871 kcal Electronic energy + Delta-G solvation = -30873.079841 eV Core-core repulsion = 26981.497663 eV Total energy + Delta-G solvation = -3891.582178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.68094 -39.33852 -38.20748 -36.74105 -35.82315 -35.72144 -35.06637 -32.02963 -31.96750 -31.28593 -29.33860 -27.30042 -26.77666 -24.78730 -23.42162 -22.89980 -22.77230 -20.69965 -19.78313 -19.44615 -18.84692 -17.74737 -17.62676 -17.22931 -16.78133 -16.43492 -16.05731 -15.70203 -15.43381 -15.27200 -15.06970 -14.85215 -14.62854 -14.43039 -14.38051 -13.79573 -13.56172 -13.16137 -13.11234 -13.03534 -12.98167 -12.94368 -12.91391 -12.74770 -12.74259 -12.53998 -12.32723 -12.17395 -11.99689 -11.93171 -11.76602 -11.63780 -11.15250 -11.13792 -10.93121 -10.75068 -9.80076 -9.54215 -9.40884 -8.79598 -6.57924 -0.24630 0.57507 0.99769 1.36712 1.45428 1.49274 2.13840 2.18894 2.62510 2.87486 2.98872 3.50062 3.59503 3.82680 3.88834 4.08489 4.19645 4.23996 4.34455 4.36496 4.38800 4.51264 4.52534 4.58013 4.66677 4.74953 4.80972 4.86731 4.91889 4.99984 5.03112 5.06250 5.11199 5.21127 5.25357 5.32046 5.37618 5.44970 5.57051 5.61070 5.69870 5.77932 5.89880 6.05703 6.16678 6.37289 6.55290 6.71969 6.87723 8.13633 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010306 B = 0.008192 C = 0.006313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.200356 B = 3417.297777 C = 4433.906311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C 0.071 3.929 4 H 0.073 0.927 5 C 0.092 3.908 6 N -0.991 5.991 7 S 2.711 3.289 8 O -0.999 6.999 9 O -1.007 7.007 10 C -0.792 4.792 11 C -0.012 4.012 12 C -0.252 4.252 13 C -0.076 4.076 14 C -0.186 4.186 15 C 0.175 3.825 16 C -0.485 4.485 17 H 0.105 0.895 18 C 0.066 3.934 19 N -0.780 5.780 20 Si 0.921 3.079 21 H -0.254 1.254 22 H -0.234 1.234 23 H -0.267 1.267 24 C 0.093 3.907 25 C 0.083 3.917 26 H 0.135 0.865 27 C -0.189 4.189 28 O -0.374 6.374 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.296 0.704 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.053 0.947 44 H 0.061 0.939 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.901 -3.063 6.975 8.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.156 4.156 3 C 0.012 3.988 4 H 0.091 0.909 5 C -0.033 4.033 6 N -0.829 5.829 7 S 2.810 3.190 8 O -0.990 6.990 9 O -0.998 6.998 10 C -0.887 4.887 11 C -0.032 4.032 12 C -0.273 4.273 13 C -0.095 4.095 14 C -0.206 4.206 15 C 0.171 3.829 16 C -0.512 4.512 17 H 0.123 0.877 18 C -0.155 4.155 19 N -0.403 5.403 20 Si 0.742 3.258 21 H -0.177 1.177 22 H -0.157 1.157 23 H -0.192 1.192 24 C -0.032 4.032 25 C 0.024 3.976 26 H 0.153 0.847 27 C -0.246 4.246 28 O -0.293 6.293 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.107 0.893 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.318 -3.300 7.122 8.522 hybrid contribution -0.496 0.145 -1.261 1.363 sum -3.814 -3.155 5.860 7.671 Atomic orbital electron populations 1.21632 0.94714 1.01964 1.01544 1.21574 0.97364 0.93520 1.03097 1.22554 0.92632 0.94798 0.88770 0.90932 1.22280 0.95901 0.81723 1.03424 1.57500 1.64203 1.22488 1.38709 1.00649 0.73259 0.72404 0.72652 1.93424 1.77118 1.56230 1.72227 1.93409 1.68841 1.65493 1.72047 1.29956 1.29167 1.06379 1.23228 1.20469 0.95002 0.91953 0.95808 1.20792 1.04571 0.98928 1.02968 1.21188 0.96281 0.94882 0.97162 1.21615 1.04007 0.93473 1.01501 1.17142 0.86379 0.93052 0.86370 1.20604 1.01946 0.92141 1.36527 0.87746 1.26364 0.93917 1.03812 0.91409 1.69808 1.01602 1.39596 1.29312 0.86057 0.81238 0.78582 0.79971 1.17699 1.15708 1.19207 1.22327 0.95300 0.96995 0.88581 1.22664 0.92846 0.82285 0.99839 0.84733 1.22436 1.00924 1.00766 1.00474 1.87866 1.78653 1.23189 1.39558 0.91222 0.92042 0.94436 0.91096 0.89474 0.89120 0.89604 0.86606 0.86114 0.86582 0.86485 0.89305 0.88581 0.89066 0.92800 0.92005 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.80 71.98 0.71 -3.01 16 2 C -0.12 -3.29 5.66 30.59 0.17 -3.12 16 3 C 0.07 2.37 2.34 30.69 0.07 2.44 16 4 H 0.07 2.83 4.47 -2.38 -0.01 2.82 16 5 C 0.09 3.19 5.01 86.35 0.43 3.63 16 6 N -0.99 -36.36 2.84 -510.83 -1.45 -37.81 16 7 S 2.71 118.75 5.08 -56.49 -0.29 118.47 16 8 O -1.00 -48.65 14.48 -128.00 -1.85 -50.50 16 9 O -1.01 -45.45 16.02 -128.00 -2.05 -47.50 16 10 C -0.79 -36.58 5.54 22.73 0.13 -36.46 16 11 C -0.01 -0.54 9.54 22.22 0.21 -0.33 16 12 C -0.25 -10.37 10.05 22.46 0.23 -10.15 16 13 C -0.08 -3.25 10.02 22.22 0.22 -3.03 16 14 C -0.19 -8.81 8.70 22.73 0.20 -8.61 16 15 C 0.18 8.46 4.47 -21.29 -0.10 8.36 16 16 C -0.48 -22.75 6.22 23.46 0.15 -22.60 16 17 H 0.10 5.05 3.46 -2.91 -0.01 5.04 16 18 C 0.07 2.85 4.27 85.26 0.36 3.21 16 19 N -0.78 -33.79 10.80 21.83 0.24 -33.55 16 20 Si 0.92 32.98 28.24 68.60 1.94 34.91 16 21 H -0.25 -9.31 7.11 99.48 0.71 -8.61 16 22 H -0.23 -7.39 7.03 99.48 0.70 -6.69 16 23 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 24 C 0.09 2.82 5.97 86.50 0.52 3.34 16 25 C 0.08 2.40 3.93 30.84 0.12 2.52 16 26 H 0.14 3.01 8.14 -2.39 -0.02 2.99 16 27 C -0.19 -6.47 8.82 71.98 0.63 -5.84 16 28 O -0.37 -11.64 9.70 -148.98 -1.44 -13.08 16 29 H 0.07 1.51 8.14 -2.38 -0.02 1.50 16 30 H 0.06 1.60 7.78 -2.38 -0.02 1.58 16 31 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.99 6.64 -2.39 -0.02 1.97 16 33 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.09 3.50 4.81 -2.39 -0.01 3.48 16 35 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.12 4.69 7.32 -2.91 -0.02 4.67 16 37 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 38 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 39 H 0.12 5.66 6.07 -2.91 -0.02 5.64 16 40 H 0.30 11.57 8.30 -92.71 -0.77 10.80 16 41 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.09 2.73 7.45 -2.39 -0.02 2.71 16 43 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.07 2.77 4.46 -2.39 -0.01 2.76 16 Total: -1.00 -56.72 350.76 0.15 -56.57 By element: Atomic # 1 Polarization: 41.13 SS G_CDS: 1.01 Total: 42.14 kcal Atomic # 6 Polarization: -73.70 SS G_CDS: 4.05 Total: -69.64 kcal Atomic # 7 Polarization: -70.15 SS G_CDS: -1.22 Total: -71.37 kcal Atomic # 8 Polarization: -105.73 SS G_CDS: -5.35 Total: -111.08 kcal Atomic # 14 Polarization: 32.98 SS G_CDS: 1.94 Total: 34.91 kcal Atomic # 16 Polarization: 118.75 SS G_CDS: -0.29 Total: 118.47 kcal Total: -56.72 0.15 -56.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601342375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.787 kcal (2) G-P(sol) polarization free energy of solvation -56.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds