Wall clock time and date at job start Tue Mar 31 2020 23:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47337 * 2 1 4 4 C 1.52998 * 109.47288 * 239.99395 * 2 1 3 5 5 C 1.53002 * 109.47177 * 174.99789 * 4 2 1 6 6 H 1.08995 * 110.74832 * 57.02635 * 5 4 2 7 7 C 1.55309 * 110.84615 * 180.71842 * 5 4 2 8 8 C 1.54949 * 100.93932 * 152.32842 * 7 5 4 9 9 O 1.43647 * 105.13372 * 323.55113 * 8 7 5 10 10 C 1.43236 * 109.97310 * 24.43364 * 9 8 7 11 11 N 1.46503 * 109.47081 * 119.99606 * 2 1 3 12 12 S 1.65597 * 120.00460 * 262.51863 * 11 2 1 13 13 O 1.42097 * 106.40383 * 180.16182 * 12 11 2 14 14 O 1.42105 * 106.39906 * 313.08241 * 12 11 2 15 15 C 1.76199 * 107.21665 * 66.61560 * 12 11 2 16 16 C 1.37636 * 120.13212 * 246.79916 * 15 12 11 17 17 C 1.38611 * 120.25168 * 179.72519 * 16 15 12 18 18 C 1.38661 * 120.49647 * 0.55777 * 17 16 15 19 19 C 1.37601 * 120.25116 * 359.72255 * 18 17 16 20 20 C 1.40704 * 120.12499 * 67.08167 * 15 12 11 21 21 C 1.41398 * 120.24505 * 359.97243 * 20 15 12 22 22 H 1.08003 * 119.99944 * 333.74539 * 21 20 15 23 23 C 1.39939 * 120.00215 * 153.73957 * 21 20 15 24 24 N 1.30828 * 120.00001 * 344.47693 * 23 21 20 25 25 Si 1.86800 * 120.00213 * 164.47202 * 23 21 20 26 26 H 1.48500 * 109.46812 * 90.00121 * 25 23 21 27 27 H 1.48496 * 109.47414 * 210.00103 * 25 23 21 28 28 H 1.48498 * 109.47260 * 330.00503 * 25 23 21 29 29 H 1.08998 * 109.47504 * 300.00277 * 1 2 3 30 30 H 1.08999 * 109.47130 * 60.00257 * 1 2 3 31 31 H 1.09000 * 109.47337 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47691 * 295.00762 * 4 2 1 33 33 H 1.09007 * 109.46689 * 55.00519 * 4 2 1 34 34 H 1.09004 * 111.12399 * 270.24376 * 7 5 4 35 35 H 1.09001 * 111.12597 * 34.40689 * 7 5 4 36 36 H 1.08997 * 110.30498 * 204.63813 * 8 7 5 37 37 H 1.08999 * 110.31125 * 82.46635 * 8 7 5 38 38 H 1.09006 * 109.82879 * 238.77437 * 10 9 8 39 39 H 1.08998 * 109.83414 * 117.79867 * 10 9 8 40 40 H 0.97005 * 119.99533 * 82.78843 * 11 2 1 41 41 H 1.08000 * 119.87379 * 359.97438 * 16 15 12 42 42 H 1.07998 * 119.75220 * 180.26070 * 17 16 15 43 43 H 1.08003 * 119.87684 * 179.74800 * 18 17 16 44 44 H 1.08003 * 120.12546 * 180.02562 * 19 18 17 45 45 H 0.96993 * 120.00326 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5649 -0.6133 -1.3136 6 1 4.0193 -1.0200 -0.4102 7 6 4.1160 -1.3209 -2.5816 8 6 5.4170 -0.5155 -2.8257 9 8 5.0935 0.8373 -2.4670 10 6 4.0031 0.8498 -1.5383 11 7 2.0183 -0.6905 1.1962 12 16 2.4704 0.1816 2.5293 13 8 2.8934 -0.7633 3.5026 14 8 3.2991 1.2352 2.0574 15 6 1.0169 0.9420 3.1726 16 6 0.8786 2.3109 3.1344 17 6 -0.2663 2.9113 3.6345 18 6 -1.2790 2.1432 4.1887 19 6 -1.1597 0.7734 4.2427 20 6 -0.0043 0.1526 3.7327 21 6 0.1292 -1.2542 3.7823 22 1 0.7507 -1.7634 3.0606 23 6 -0.5440 -1.9867 4.7664 24 7 -1.0423 -1.3757 5.8105 25 14 -0.7314 -3.8368 4.5895 26 1 0.4253 -4.5147 5.2281 27 1 -1.9874 -4.2727 5.2508 28 1 -0.7807 -4.1938 3.1489 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7516 -1.7716 -1.2055 33 1 1.6054 -0.2618 -2.1369 34 1 4.3349 -2.3699 -2.3822 35 1 3.4269 -1.2177 -3.4198 36 1 5.7043 -0.5701 -3.8757 37 1 6.2201 -0.8931 -2.1928 38 1 3.1736 1.4252 -1.9497 39 1 4.3264 1.2881 -0.5941 40 1 2.0806 -1.6585 1.2060 41 1 1.6632 2.9192 2.7095 42 1 -0.3682 3.9858 3.5966 43 1 -2.1650 2.6217 4.5792 44 1 -1.9499 0.1770 4.6744 45 1 -1.5093 -1.8833 6.4924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601369268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:58 Heat of formation + Delta-G solvation = -120.856254 kcal Electronic energy + Delta-G solvation = -28832.647459 eV Core-core repulsion = 24940.957073 eV Total energy + Delta-G solvation = -3891.690386 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -39.57045 -37.62941 -36.77241 -36.13635 -34.83953 -33.92953 -32.72476 -30.28315 -30.08302 -29.57605 -29.07450 -25.91900 -25.55504 -22.74407 -21.66096 -21.33844 -21.10149 -20.23356 -18.80789 -17.73149 -17.08321 -16.60558 -16.16046 -15.92463 -15.49508 -15.39234 -14.64272 -14.43720 -14.26076 -13.99131 -13.36950 -13.29983 -13.18182 -13.06348 -12.79346 -12.73986 -12.40399 -12.13262 -11.81972 -11.58753 -11.51735 -11.29652 -11.23506 -11.17766 -11.12426 -11.03572 -11.00677 -10.81033 -10.74415 -10.65561 -10.56253 -10.31571 -9.91792 -9.49150 -9.45499 -9.43992 -8.80158 -8.03105 -7.64202 -7.08593 -4.77047 1.53194 2.33418 2.71170 2.93478 2.96235 3.09771 3.73367 3.87720 3.92953 4.37226 4.37604 4.60981 4.75017 4.87316 5.05758 5.13598 5.19914 5.27089 5.30026 5.52556 5.56044 5.60432 5.62521 5.69151 5.79478 5.82465 5.92878 5.95539 6.04989 6.09188 6.17073 6.22820 6.26121 6.39905 6.55432 6.68593 6.75491 6.93542 7.01226 7.07223 7.28858 7.48076 7.53665 7.66486 7.80389 7.87679 8.27093 8.46929 8.63655 9.84815 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013676 B = 0.004382 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.831942 B = 6388.882279 C = 7350.000160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.152 3.848 3 H 0.089 0.911 4 C -0.110 4.110 5 C -0.123 4.123 6 H 0.089 0.911 7 C -0.153 4.153 8 C 0.050 3.950 9 O -0.388 6.388 10 C 0.048 3.952 11 N -1.117 6.117 12 S 2.697 3.303 13 O -0.966 6.966 14 O -0.997 6.997 15 C -0.776 4.776 16 C -0.001 4.001 17 C -0.253 4.253 18 C -0.075 4.075 19 C -0.162 4.162 20 C 0.188 3.812 21 C -0.441 4.441 22 H 0.087 0.913 23 C 0.081 3.919 24 N -0.771 5.771 25 Si 0.913 3.087 26 H -0.262 1.262 27 H -0.273 1.273 28 H -0.256 1.256 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.410 0.590 41 H 0.107 0.893 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.123 0.877 45 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.976 -2.487 -12.591 12.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.045 3.955 3 H 0.107 0.893 4 C -0.150 4.150 5 C -0.142 4.142 6 H 0.107 0.893 7 C -0.191 4.191 8 C -0.027 4.027 9 O -0.308 6.308 10 C -0.028 4.028 11 N -0.873 5.873 12 S 2.795 3.205 13 O -0.957 6.957 14 O -0.987 6.987 15 C -0.872 4.872 16 C -0.021 4.021 17 C -0.273 4.273 18 C -0.094 4.094 19 C -0.181 4.181 20 C 0.183 3.817 21 C -0.469 4.469 22 H 0.105 0.895 23 C -0.141 4.141 24 N -0.394 5.394 25 Si 0.736 3.264 26 H -0.187 1.187 27 H -0.198 1.198 28 H -0.180 1.180 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.243 0.757 41 H 0.125 0.875 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.140 0.860 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.843 -2.098 -12.130 12.634 hybrid contribution -1.103 -1.189 0.376 1.665 sum 1.740 -3.287 -11.753 12.328 Atomic orbital electron populations 1.22322 0.95070 1.02868 1.02837 1.20684 0.94203 0.96375 0.84283 0.89344 1.21857 0.93496 1.01748 0.97854 1.22760 0.97011 0.95688 0.98707 0.89282 1.23335 0.97345 1.00199 0.98184 1.23337 0.96664 0.82431 1.00237 1.88383 1.52673 1.25955 1.63750 1.23366 0.89351 0.96420 0.93659 1.55795 1.83838 1.18780 1.28896 1.01166 0.74383 0.72880 0.72117 1.93548 1.81721 1.62238 1.58157 1.93445 1.66376 1.57414 1.81497 1.29800 1.21910 1.03109 1.32341 1.20236 0.95643 0.92611 0.93592 1.20467 0.97380 0.97595 1.11866 1.20883 0.96983 0.94630 0.96939 1.21473 0.98917 0.93329 1.04427 1.16948 0.88143 0.91908 0.84677 1.19835 1.23539 0.91581 1.11955 0.89504 1.25962 0.92388 1.02133 0.93601 1.69799 1.24571 1.39216 1.05837 0.86210 0.78891 0.81006 0.80307 1.18707 1.19782 1.17952 0.90631 0.92427 0.92048 0.90759 0.90548 0.90053 0.90348 0.90137 0.92368 0.91165 0.89970 0.75688 0.87521 0.88842 0.88939 0.85953 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 9.52 37.16 0.35 -2.02 16 2 C 0.15 2.10 2.85 -67.93 -0.19 1.90 16 3 H 0.09 1.29 6.64 -51.93 -0.34 0.94 16 4 C -0.11 -1.18 4.22 -26.73 -0.11 -1.30 16 5 C -0.12 -1.42 2.92 -88.67 -0.26 -1.68 16 6 H 0.09 1.12 7.75 -51.93 -0.40 0.72 16 7 C -0.15 -1.43 6.62 -24.48 -0.16 -1.59 16 8 C 0.05 0.52 7.78 38.19 0.30 0.82 16 9 O -0.39 -5.41 11.36 -35.23 -0.40 -5.81 16 10 C 0.05 0.64 6.49 37.88 0.25 0.89 16 11 N -1.12 -18.06 4.20 -4.89 -0.02 -18.08 16 12 S 2.70 56.83 4.96 -107.50 -0.53 56.29 16 13 O -0.97 -23.61 16.34 -57.17 -0.93 -24.54 16 14 O -1.00 -21.69 16.24 -57.17 -0.93 -22.62 16 15 C -0.78 -17.89 5.10 -38.87 -0.20 -18.09 16 16 C 0.00 -0.02 9.53 -39.66 -0.38 -0.40 16 17 C -0.25 -5.41 10.05 -39.29 -0.39 -5.80 16 18 C -0.08 -1.66 10.02 -39.66 -0.40 -2.05 16 19 C -0.16 -3.89 8.68 -38.87 -0.34 -4.23 16 20 C 0.19 4.61 5.51 -106.82 -0.59 4.03 16 21 C -0.44 -10.70 7.66 -37.74 -0.29 -10.99 16 22 H 0.09 1.96 5.75 -52.48 -0.30 1.66 16 23 C 0.08 1.90 5.18 -17.34 -0.09 1.81 16 24 N -0.77 -18.61 10.94 55.55 0.61 -18.00 16 25 Si 0.91 17.46 29.59 -169.99 -5.03 12.43 16 26 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 27 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 28 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 29 H 0.07 1.27 7.21 -51.93 -0.37 0.89 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.71 8.07 -51.92 -0.42 0.29 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.66 8.04 -51.93 -0.42 0.24 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.86 7.74 -51.93 -0.40 0.46 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.41 5.88 8.64 -34.47 -0.30 5.59 16 41 H 0.11 2.19 7.32 -52.49 -0.38 1.80 16 42 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 44 H 0.12 2.98 6.21 -52.48 -0.33 2.65 16 45 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 LS Contribution 371.86 15.07 5.60 5.60 Total: -1.00 -30.04 371.86 -10.75 -40.79 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -6.61 Total: 12.64 kcal Atomic # 6 Polarization: -36.20 SS G_CDS: -2.51 Total: -38.70 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.59 Total: -36.08 kcal Atomic # 8 Polarization: -50.71 SS G_CDS: -2.26 Total: -52.97 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal Atomic # 16 Polarization: 56.83 SS G_CDS: -0.53 Total: 56.29 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.04 -10.75 -40.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601369268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.063 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds