Wall clock time and date at job start Tue Mar 31 2020 23:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47337 * 2 1 4 4 C 1.52998 * 109.47288 * 239.99395 * 2 1 3 5 5 C 1.53002 * 109.47177 * 174.99789 * 4 2 1 6 6 H 1.08995 * 110.74832 * 57.02635 * 5 4 2 7 7 C 1.55309 * 110.84615 * 180.71842 * 5 4 2 8 8 C 1.54949 * 100.93932 * 152.32842 * 7 5 4 9 9 O 1.43647 * 105.13372 * 323.55113 * 8 7 5 10 10 C 1.43236 * 109.97310 * 24.43364 * 9 8 7 11 11 N 1.46503 * 109.47081 * 119.99606 * 2 1 3 12 12 S 1.65597 * 120.00460 * 262.51863 * 11 2 1 13 13 O 1.42097 * 106.40383 * 180.16182 * 12 11 2 14 14 O 1.42105 * 106.39906 * 313.08241 * 12 11 2 15 15 C 1.76199 * 107.21665 * 66.61560 * 12 11 2 16 16 C 1.37636 * 120.13212 * 246.79916 * 15 12 11 17 17 C 1.38611 * 120.25168 * 179.72519 * 16 15 12 18 18 C 1.38661 * 120.49647 * 0.55777 * 17 16 15 19 19 C 1.37601 * 120.25116 * 359.72255 * 18 17 16 20 20 C 1.40704 * 120.12499 * 67.08167 * 15 12 11 21 21 C 1.41398 * 120.24505 * 359.97243 * 20 15 12 22 22 H 1.08003 * 119.99944 * 333.74539 * 21 20 15 23 23 C 1.39939 * 120.00215 * 153.73957 * 21 20 15 24 24 N 1.30828 * 120.00001 * 344.47693 * 23 21 20 25 25 Si 1.86800 * 120.00213 * 164.47202 * 23 21 20 26 26 H 1.48500 * 109.46812 * 90.00121 * 25 23 21 27 27 H 1.48496 * 109.47414 * 210.00103 * 25 23 21 28 28 H 1.48498 * 109.47260 * 330.00503 * 25 23 21 29 29 H 1.08998 * 109.47504 * 300.00277 * 1 2 3 30 30 H 1.08999 * 109.47130 * 60.00257 * 1 2 3 31 31 H 1.09000 * 109.47337 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47691 * 295.00762 * 4 2 1 33 33 H 1.09007 * 109.46689 * 55.00519 * 4 2 1 34 34 H 1.09004 * 111.12399 * 270.24376 * 7 5 4 35 35 H 1.09001 * 111.12597 * 34.40689 * 7 5 4 36 36 H 1.08997 * 110.30498 * 204.63813 * 8 7 5 37 37 H 1.08999 * 110.31125 * 82.46635 * 8 7 5 38 38 H 1.09006 * 109.82879 * 238.77437 * 10 9 8 39 39 H 1.08998 * 109.83414 * 117.79867 * 10 9 8 40 40 H 0.97005 * 119.99533 * 82.78843 * 11 2 1 41 41 H 1.08000 * 119.87379 * 359.97438 * 16 15 12 42 42 H 1.07998 * 119.75220 * 180.26070 * 17 16 15 43 43 H 1.08003 * 119.87684 * 179.74800 * 18 17 16 44 44 H 1.08003 * 120.12546 * 180.02562 * 19 18 17 45 45 H 0.96993 * 120.00326 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5649 -0.6133 -1.3136 6 1 4.0193 -1.0200 -0.4102 7 6 4.1160 -1.3209 -2.5816 8 6 5.4170 -0.5155 -2.8257 9 8 5.0935 0.8373 -2.4670 10 6 4.0031 0.8498 -1.5383 11 7 2.0183 -0.6905 1.1962 12 16 2.4704 0.1816 2.5293 13 8 2.8934 -0.7633 3.5026 14 8 3.2991 1.2352 2.0574 15 6 1.0169 0.9420 3.1726 16 6 0.8786 2.3109 3.1344 17 6 -0.2663 2.9113 3.6345 18 6 -1.2790 2.1432 4.1887 19 6 -1.1597 0.7734 4.2427 20 6 -0.0043 0.1526 3.7327 21 6 0.1292 -1.2542 3.7823 22 1 0.7507 -1.7634 3.0606 23 6 -0.5440 -1.9867 4.7664 24 7 -1.0423 -1.3757 5.8105 25 14 -0.7314 -3.8368 4.5895 26 1 0.4253 -4.5147 5.2281 27 1 -1.9874 -4.2727 5.2508 28 1 -0.7807 -4.1938 3.1489 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7516 -1.7716 -1.2055 33 1 1.6054 -0.2618 -2.1369 34 1 4.3349 -2.3699 -2.3822 35 1 3.4269 -1.2177 -3.4198 36 1 5.7043 -0.5701 -3.8757 37 1 6.2201 -0.8931 -2.1928 38 1 3.1736 1.4252 -1.9497 39 1 4.3264 1.2881 -0.5941 40 1 2.0806 -1.6585 1.2060 41 1 1.6632 2.9192 2.7095 42 1 -0.3682 3.9858 3.5966 43 1 -2.1650 2.6217 4.5792 44 1 -1.9499 0.1770 4.6744 45 1 -1.5093 -1.8833 6.4924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601369268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:57 Heat of formation + Delta-G solvation = -140.390343 kcal Electronic energy + Delta-G solvation = -28833.494520 eV Core-core repulsion = 24940.957073 eV Total energy + Delta-G solvation = -3892.537448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.50449 -39.37008 -38.14367 -37.68236 -36.63571 -35.66916 -33.74845 -32.00988 -31.39039 -31.11353 -30.10634 -27.33033 -26.89096 -23.68540 -23.38394 -22.93805 -22.24672 -21.21667 -20.36906 -19.49124 -18.61759 -17.87196 -17.53861 -17.13976 -16.91482 -16.81385 -16.04647 -15.89947 -15.57895 -15.10180 -15.04769 -14.86515 -14.45763 -14.38942 -14.03648 -13.80205 -13.73110 -13.47209 -13.22266 -13.02927 -12.94466 -12.89668 -12.81611 -12.75754 -12.54079 -12.44506 -12.34164 -12.13940 -12.06455 -11.76789 -11.63405 -11.57838 -11.36104 -11.15060 -11.10497 -10.45059 -10.20718 -9.78847 -9.43097 -8.80700 -6.57715 -0.12071 0.56908 0.99548 1.37292 1.48932 1.54242 2.15989 2.39355 2.64194 2.99328 3.04365 3.50339 3.51342 3.75231 3.86182 3.99816 4.11707 4.22820 4.33120 4.34955 4.38725 4.49462 4.51659 4.60126 4.70983 4.74640 4.86228 4.87146 4.95734 4.98674 5.00061 5.04476 5.09337 5.16360 5.17302 5.31693 5.38643 5.46176 5.53874 5.56171 5.73624 5.84070 6.03389 6.09288 6.10735 6.31845 6.50055 6.68988 6.86540 8.15908 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013676 B = 0.004382 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.831942 B = 6388.882279 C = 7350.000160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.146 3.854 3 H 0.078 0.922 4 C -0.100 4.100 5 C -0.126 4.126 6 H 0.073 0.927 7 C -0.141 4.141 8 C 0.039 3.961 9 O -0.412 6.412 10 C 0.045 3.955 11 N -1.103 6.103 12 S 2.715 3.285 13 O -1.004 7.004 14 O -1.008 7.008 15 C -0.790 4.790 16 C -0.014 4.014 17 C -0.254 4.254 18 C -0.075 4.075 19 C -0.189 4.189 20 C 0.168 3.832 21 C -0.469 4.469 22 H 0.094 0.906 23 C 0.039 3.961 24 N -0.805 5.805 25 Si 0.974 3.026 26 H -0.268 1.268 27 H -0.261 1.261 28 H -0.240 1.240 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.420 0.580 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.112 0.888 45 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.432 -3.600 -14.872 15.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.040 3.960 3 H 0.096 0.904 4 C -0.139 4.139 5 C -0.144 4.144 6 H 0.092 0.908 7 C -0.178 4.178 8 C -0.037 4.037 9 O -0.332 6.332 10 C -0.031 4.031 11 N -0.863 5.863 12 S 2.811 3.189 13 O -0.995 6.995 14 O -0.998 6.998 15 C -0.884 4.884 16 C -0.034 4.034 17 C -0.274 4.274 18 C -0.094 4.094 19 C -0.209 4.209 20 C 0.163 3.837 21 C -0.497 4.497 22 H 0.112 0.888 23 C -0.180 4.180 24 N -0.429 5.429 25 Si 0.793 3.207 26 H -0.193 1.193 27 H -0.185 1.185 28 H -0.163 1.163 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.256 0.744 41 H 0.137 0.863 42 H 0.141 0.859 43 H 0.137 0.863 44 H 0.130 0.870 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.286 -3.194 -14.409 14.934 hybrid contribution -0.876 -0.702 1.039 1.530 sum 1.410 -3.896 -13.369 13.997 Atomic orbital electron populations 1.22281 0.94811 1.03192 1.02460 1.20934 0.94358 0.96219 0.84512 0.90419 1.21828 0.92714 1.02676 0.96709 1.22754 0.97617 0.94646 0.99418 0.90811 1.23316 0.96618 1.00616 0.97265 1.23598 0.97460 0.81189 1.01452 1.88354 1.52969 1.28204 1.63698 1.23343 0.89542 0.97830 0.92422 1.55377 1.83663 1.19132 1.28155 1.00466 0.73725 0.72416 0.72299 1.93489 1.82377 1.63148 1.60437 1.93428 1.66617 1.58097 1.81667 1.30094 1.22097 1.03747 1.32418 1.20530 0.96457 0.92611 0.93756 1.20834 0.96737 0.99150 1.10694 1.21205 0.98055 0.94040 0.96112 1.21533 0.99014 0.94365 1.05958 1.17221 0.88663 0.92603 0.85207 1.20128 1.24736 0.91941 1.12867 0.88806 1.26838 0.91686 1.06489 0.92938 1.69841 1.25403 1.41056 1.06615 0.85307 0.78879 0.75353 0.81113 1.19307 1.18533 1.16298 0.94088 0.89694 0.91361 0.88826 0.88022 0.88247 0.88629 0.88058 0.92502 0.90134 0.93156 0.74400 0.86345 0.85873 0.86301 0.87011 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.40 9.52 71.98 0.69 -3.71 16 2 C 0.15 3.83 2.85 44.99 0.13 3.96 16 3 H 0.08 2.22 6.64 -2.39 -0.02 2.20 16 4 C -0.10 -1.85 4.22 30.59 0.13 -1.72 16 5 C -0.13 -2.66 2.92 -9.53 -0.03 -2.68 16 6 H 0.07 1.78 7.75 -2.39 -0.02 1.76 16 7 C -0.14 -2.17 6.62 32.05 0.21 -1.96 16 8 C 0.04 0.74 7.78 72.65 0.56 1.30 16 9 O -0.41 -11.13 11.36 -148.98 -1.69 -12.82 16 10 C 0.04 1.17 6.49 72.45 0.47 1.64 16 11 N -1.10 -35.18 4.20 -169.38 -0.71 -35.89 16 12 S 2.71 116.34 4.96 -56.49 -0.28 116.06 16 13 O -1.00 -50.26 16.34 -128.00 -2.09 -52.35 16 14 O -1.01 -44.65 16.24 -128.00 -2.08 -46.73 16 15 C -0.79 -37.05 5.10 22.73 0.12 -36.94 16 16 C -0.01 -0.61 9.53 22.22 0.21 -0.40 16 17 C -0.25 -10.66 10.05 22.46 0.23 -10.43 16 18 C -0.08 -3.29 10.02 22.22 0.22 -3.07 16 19 C -0.19 -9.29 8.68 22.73 0.20 -9.09 16 20 C 0.17 8.42 5.51 -21.29 -0.12 8.30 16 21 C -0.47 -23.16 7.66 23.46 0.18 -22.98 16 22 H 0.09 4.30 5.75 -2.91 -0.02 4.28 16 23 C 0.04 1.84 5.18 85.25 0.44 2.28 16 24 N -0.81 -39.72 10.94 21.83 0.24 -39.48 16 25 Si 0.97 35.41 29.59 68.60 2.03 37.44 16 26 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 27 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 28 H -0.24 -8.03 7.11 99.48 0.71 -7.32 16 29 H 0.04 1.36 7.21 -2.39 -0.02 1.35 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.10 1.44 8.07 -2.38 -0.02 1.42 16 34 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.10 1.18 8.04 -2.39 -0.02 1.16 16 36 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.87 7.74 -2.38 -0.02 1.85 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.42 11.69 8.64 -96.74 -0.84 10.86 16 41 H 0.12 4.85 7.32 -2.91 -0.02 4.83 16 42 H 0.12 4.36 8.06 -2.91 -0.02 4.33 16 43 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 44 H 0.11 5.64 6.21 -2.91 -0.02 5.62 16 45 H 0.30 13.03 8.30 -92.71 -0.77 12.27 16 Total: -1.00 -66.82 371.86 -0.78 -67.60 By element: Atomic # 1 Polarization: 41.49 SS G_CDS: 0.17 Total: 41.66 kcal Atomic # 6 Polarization: -79.13 SS G_CDS: 3.64 Total: -75.50 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -0.47 Total: -75.37 kcal Atomic # 8 Polarization: -106.04 SS G_CDS: -5.86 Total: -111.90 kcal Atomic # 14 Polarization: 35.41 SS G_CDS: 2.03 Total: 37.44 kcal Atomic # 16 Polarization: 116.34 SS G_CDS: -0.28 Total: 116.06 kcal Total: -66.82 -0.78 -67.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601369268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.791 kcal (2) G-P(sol) polarization free energy of solvation -66.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds