Wall clock time and date at job start Tue Mar 31 2020 23:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47333 * 2 1 4 4 C 1.53005 * 109.47002 * 119.99781 * 2 1 3 5 5 C 1.53005 * 109.46684 * 184.99906 * 4 2 1 6 6 H 1.08996 * 110.45532 * 52.39847 * 5 4 2 7 7 C 1.54514 * 110.50844 * 175.00297 * 5 4 2 8 8 C 1.54475 * 104.06170 * 118.64426 * 7 5 4 9 9 O 1.44427 * 104.80615 * 23.97913 * 8 7 5 10 10 C 1.44428 * 105.27272 * 319.48490 * 9 8 7 11 11 N 1.46495 * 109.47003 * 239.99956 * 2 1 3 12 12 S 1.65597 * 119.99951 * 93.79039 * 11 2 1 13 13 O 1.42102 * 106.40510 * 313.77787 * 12 11 2 14 14 O 1.42106 * 106.40439 * 180.85479 * 12 11 2 15 15 C 1.76204 * 107.21850 * 67.31936 * 12 11 2 16 16 C 1.37642 * 120.12605 * 268.17471 * 15 12 11 17 17 C 1.38605 * 120.24761 * 180.30069 * 16 15 12 18 18 C 1.38660 * 120.50355 * 359.44319 * 17 16 15 19 19 C 1.37594 * 120.24377 * 0.27855 * 18 17 16 20 20 C 1.40694 * 120.12947 * 87.92173 * 15 12 11 21 21 C 1.41390 * 120.24297 * 359.95640 * 20 15 12 22 22 H 1.07999 * 120.00270 * 325.59013 * 21 20 15 23 23 C 1.39954 * 119.99899 * 145.59286 * 21 20 15 24 24 N 1.30821 * 120.00005 * 357.43790 * 23 21 20 25 25 Si 1.86800 * 119.99846 * 177.43871 * 23 21 20 26 26 H 1.48501 * 109.47263 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47051 * 119.99633 * 25 23 21 28 28 H 1.48496 * 109.47218 * 240.00076 * 25 23 21 29 29 H 1.09001 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47217 * 300.00012 * 1 2 3 31 31 H 1.08995 * 109.47275 * 59.99987 * 1 2 3 32 32 H 1.08996 * 109.47361 * 305.00209 * 4 2 1 33 33 H 1.08998 * 109.46739 * 65.00146 * 4 2 1 34 34 H 1.08995 * 110.50719 * 237.29069 * 7 5 4 35 35 H 1.09002 * 110.50917 * 359.86206 * 7 5 4 36 36 H 1.09001 * 110.37137 * 142.81254 * 8 7 5 37 37 H 1.09007 * 110.37293 * 265.14783 * 8 7 5 38 38 H 1.08995 * 110.37516 * 281.67953 * 10 9 8 39 39 H 1.08997 * 110.37083 * 159.33935 * 10 9 8 40 40 H 0.96996 * 120.00118 * 273.78984 * 11 2 1 41 41 H 1.08008 * 119.87698 * 0.02562 * 16 15 12 42 42 H 1.08007 * 119.75207 * 179.72034 * 17 16 15 43 43 H 1.07995 * 119.87984 * 180.25415 * 18 17 16 44 44 H 1.08004 * 120.12847 * 179.97438 * 19 18 17 45 45 H 0.96996 * 119.99474 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3137 6 1 3.8772 0.4270 1.2227 7 6 4.0958 -1.2249 2.6295 8 6 5.0046 -2.3843 2.1646 9 8 5.4013 -2.0270 0.8227 10 6 4.2156 -1.4756 0.2095 11 7 2.0183 -0.6906 -1.1961 12 16 2.3836 0.1741 -2.5603 13 8 1.3034 1.0741 -2.7663 14 8 2.8040 -0.7714 -3.5343 15 6 3.7925 1.1648 -2.1882 16 6 3.6299 2.4459 -1.7119 17 6 4.7364 3.2295 -1.4242 18 6 6.0178 2.7301 -1.6013 19 6 6.2040 1.4503 -2.0709 20 6 5.0880 0.6475 -2.3717 21 6 5.2672 -0.6693 -2.8545 22 1 4.5678 -1.4450 -2.5799 23 6 6.3510 -0.9675 -3.6883 24 7 7.1697 -0.0178 -4.0616 25 14 6.6285 -2.7214 -4.2681 26 1 5.5705 -3.6008 -3.7090 27 1 6.5773 -2.7663 -5.7515 28 1 7.9585 -3.1915 -3.8041 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6054 -0.2617 2.1370 33 1 1.7516 -1.7715 1.2056 34 1 4.6727 -0.4876 3.1878 35 1 3.2717 -1.6019 3.2352 36 1 5.8790 -2.4634 2.8105 37 1 4.4497 -3.3226 2.1591 38 1 3.5399 -2.2744 -0.0959 39 1 4.4841 -0.8566 -0.6466 40 1 2.1276 -1.6544 -1.1891 41 1 2.6364 2.8436 -1.5659 42 1 4.5995 4.2353 -1.0551 43 1 6.8728 3.3481 -1.3701 44 1 7.2030 1.0634 -2.2085 45 1 7.9206 -0.2245 -4.6397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601369270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:06 Heat of formation + Delta-G solvation = -109.852998 kcal Electronic energy + Delta-G solvation = -29973.451049 eV Core-core repulsion = 26082.237799 eV Total energy + Delta-G solvation = -3891.213249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.38952 -37.60001 -36.74679 -36.09470 -34.80032 -33.76554 -32.48061 -30.28859 -29.85511 -29.55237 -29.05110 -25.76957 -25.41023 -22.64862 -21.64883 -21.34764 -20.98105 -20.20646 -18.70786 -17.67288 -16.97574 -16.43518 -15.92989 -15.50952 -15.36783 -15.31392 -14.84674 -14.32054 -14.28145 -13.60284 -13.37272 -13.30225 -13.17430 -13.03178 -12.68662 -12.60183 -12.26114 -12.01423 -11.83176 -11.44849 -11.31476 -11.22569 -11.18425 -11.10765 -11.05856 -11.00466 -10.98504 -10.59887 -10.46075 -10.39790 -10.32380 -10.25660 -9.85505 -9.44756 -9.39677 -9.24206 -8.84645 -8.02203 -7.49274 -6.89925 -4.65110 1.50933 2.33125 2.76709 3.08457 3.15877 3.19665 3.92149 3.93972 4.31657 4.51923 4.61398 4.74691 4.83882 5.09018 5.13493 5.22146 5.32940 5.41523 5.45087 5.47050 5.53482 5.72793 5.74291 5.79003 5.88827 5.92608 5.98469 6.01149 6.03212 6.09758 6.23580 6.38791 6.40763 6.42677 6.53940 6.59971 6.85339 7.00566 7.11227 7.19990 7.34185 7.47040 7.54518 7.74646 7.82474 7.95164 8.37438 8.62126 8.68150 10.02255 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009393 B = 0.006764 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.125467 B = 4138.299000 C = 4896.230509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.154 3.846 3 H 0.085 0.915 4 C -0.113 4.113 5 C -0.122 4.122 6 H 0.088 0.912 7 C -0.151 4.151 8 C 0.041 3.959 9 O -0.367 6.367 10 C 0.039 3.961 11 N -1.124 6.124 12 S 2.686 3.314 13 O -0.994 6.994 14 O -0.955 6.955 15 C -0.774 4.774 16 C -0.006 4.006 17 C -0.246 4.246 18 C -0.080 4.080 19 C -0.146 4.146 20 C 0.181 3.819 21 C -0.426 4.426 22 H 0.097 0.903 23 C 0.078 3.922 24 N -0.788 5.788 25 Si 0.920 3.080 26 H -0.253 1.253 27 H -0.271 1.271 28 H -0.272 1.272 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.122 0.878 40 H 0.409 0.591 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.126 0.874 45 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.789 -3.180 11.292 13.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.046 3.954 3 H 0.103 0.897 4 C -0.152 4.152 5 C -0.141 4.141 6 H 0.106 0.894 7 C -0.189 4.189 8 C -0.037 4.037 9 O -0.286 6.286 10 C -0.037 4.037 11 N -0.881 5.881 12 S 2.784 3.216 13 O -0.985 6.985 14 O -0.945 6.945 15 C -0.870 4.870 16 C -0.026 4.026 17 C -0.266 4.266 18 C -0.099 4.099 19 C -0.166 4.166 20 C 0.176 3.824 21 C -0.455 4.455 22 H 0.114 0.886 23 C -0.142 4.142 24 N -0.412 5.412 25 Si 0.743 3.257 26 H -0.176 1.176 27 H -0.196 1.196 28 H -0.198 1.198 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.140 0.860 40 H 0.243 0.757 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.144 0.856 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.906 -3.050 10.242 12.210 hybrid contribution 0.662 -0.612 0.244 0.934 sum -5.243 -3.662 10.486 12.282 Atomic orbital electron populations 1.22331 0.95560 1.02237 1.02843 1.20650 0.93672 0.96396 0.84639 0.89663 1.21950 0.94596 1.01146 0.97494 1.22582 0.95149 1.01711 0.94620 0.89398 1.23006 0.99568 0.98469 0.97811 1.23354 0.98259 0.96475 0.85594 1.89229 1.32878 1.81850 1.24593 1.24078 0.86280 0.95973 0.97381 1.56160 1.82890 1.19200 1.29883 1.01579 0.73872 0.73608 0.72514 1.93453 1.54266 1.66125 1.84626 1.93596 1.82675 1.61689 1.56538 1.29900 1.14410 1.09337 1.33323 1.20172 0.97243 0.92156 0.92998 1.20476 0.93027 0.99461 1.13657 1.20911 0.95641 0.95742 0.97621 1.21586 0.99699 0.94059 1.01271 1.17035 0.88878 0.92235 0.84242 1.20041 1.07656 0.95089 1.22718 0.88552 1.25935 0.93693 0.99846 0.94688 1.69762 1.11696 1.34015 1.25723 0.86042 0.79066 0.81393 0.79154 1.17648 1.19609 1.19774 0.92477 0.92064 0.90978 0.90645 0.91273 0.90991 0.90913 0.89850 0.93005 0.93047 0.85985 0.75697 0.87949 0.88901 0.88917 0.85596 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 9.52 37.16 0.35 -1.68 16 2 C 0.15 2.06 2.75 -67.93 -0.19 1.88 16 3 H 0.09 1.21 7.65 -51.93 -0.40 0.82 16 4 C -0.11 -1.26 4.16 -26.73 -0.11 -1.37 16 5 C -0.12 -1.66 3.11 -89.04 -0.28 -1.93 16 6 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 7 C -0.15 -1.73 6.74 -25.16 -0.17 -1.90 16 8 C 0.04 0.52 7.63 37.93 0.29 0.81 16 9 O -0.37 -6.58 11.65 -35.23 -0.41 -6.99 16 10 C 0.04 0.66 5.51 37.94 0.21 0.87 16 11 N -1.12 -17.87 3.68 -4.89 -0.02 -17.89 16 12 S 2.69 56.31 5.34 -107.50 -0.57 55.73 16 13 O -0.99 -22.08 16.33 -57.17 -0.93 -23.01 16 14 O -0.95 -22.92 14.77 -57.17 -0.84 -23.76 16 15 C -0.77 -17.62 5.51 -38.87 -0.21 -17.83 16 16 C -0.01 -0.13 9.16 -39.66 -0.36 -0.49 16 17 C -0.25 -5.18 10.05 -39.29 -0.39 -5.58 16 18 C -0.08 -1.77 10.02 -39.66 -0.40 -2.16 16 19 C -0.15 -3.57 8.64 -38.87 -0.34 -3.91 16 20 C 0.18 4.48 4.28 -106.83 -0.46 4.02 16 21 C -0.43 -10.72 5.94 -37.74 -0.22 -10.94 16 22 H 0.10 2.33 5.60 -52.49 -0.29 2.04 16 23 C 0.08 1.93 5.35 -17.34 -0.09 1.84 16 24 N -0.79 -19.74 10.84 55.55 0.60 -19.14 16 25 Si 0.92 19.36 29.56 -169.99 -5.02 14.34 16 26 H -0.25 -5.31 7.11 56.52 0.40 -4.90 16 27 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 28 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.01 7.51 -51.93 -0.39 0.62 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.70 7.96 -51.93 -0.41 0.29 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.67 7.73 -51.93 -0.40 0.27 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.78 6.29 -51.93 -0.33 0.45 16 39 H 0.12 2.40 3.44 -51.93 -0.18 2.22 16 40 H 0.41 5.81 7.13 -34.47 -0.25 5.56 16 41 H 0.10 2.00 7.57 -52.48 -0.40 1.60 16 42 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 43 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 44 H 0.13 3.18 6.37 -52.48 -0.33 2.84 16 45 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 LS Contribution 360.51 15.07 5.43 5.43 Total: -1.00 -30.35 360.51 -10.46 -40.81 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -6.32 Total: 12.85 kcal Atomic # 6 Polarization: -36.01 SS G_CDS: -2.37 Total: -38.38 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.58 Total: -37.02 kcal Atomic # 8 Polarization: -51.57 SS G_CDS: -2.19 Total: -53.76 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Atomic # 16 Polarization: 56.31 SS G_CDS: -0.57 Total: 55.73 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.35 -10.46 -40.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601369270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.040 kcal (2) G-P(sol) polarization free energy of solvation -30.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds