Wall clock time and date at job start Tue Mar 31 2020 23:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47333 * 2 1 4 4 C 1.53005 * 109.47002 * 119.99781 * 2 1 3 5 5 C 1.53005 * 109.46684 * 184.99906 * 4 2 1 6 6 H 1.08996 * 110.45532 * 52.39847 * 5 4 2 7 7 C 1.54514 * 110.50844 * 175.00297 * 5 4 2 8 8 C 1.54475 * 104.06170 * 118.64426 * 7 5 4 9 9 O 1.44427 * 104.80615 * 23.97913 * 8 7 5 10 10 C 1.44428 * 105.27272 * 319.48490 * 9 8 7 11 11 N 1.46495 * 109.47003 * 239.99956 * 2 1 3 12 12 S 1.65597 * 119.99951 * 93.79039 * 11 2 1 13 13 O 1.42102 * 106.40510 * 313.77787 * 12 11 2 14 14 O 1.42106 * 106.40439 * 180.85479 * 12 11 2 15 15 C 1.76204 * 107.21850 * 67.31936 * 12 11 2 16 16 C 1.37642 * 120.12605 * 268.17471 * 15 12 11 17 17 C 1.38605 * 120.24761 * 180.30069 * 16 15 12 18 18 C 1.38660 * 120.50355 * 359.44319 * 17 16 15 19 19 C 1.37594 * 120.24377 * 0.27855 * 18 17 16 20 20 C 1.40694 * 120.12947 * 87.92173 * 15 12 11 21 21 C 1.41390 * 120.24297 * 359.95640 * 20 15 12 22 22 H 1.07999 * 120.00270 * 325.59013 * 21 20 15 23 23 C 1.39954 * 119.99899 * 145.59286 * 21 20 15 24 24 N 1.30821 * 120.00005 * 357.43790 * 23 21 20 25 25 Si 1.86800 * 119.99846 * 177.43871 * 23 21 20 26 26 H 1.48501 * 109.47263 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47051 * 119.99633 * 25 23 21 28 28 H 1.48496 * 109.47218 * 240.00076 * 25 23 21 29 29 H 1.09001 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47217 * 300.00012 * 1 2 3 31 31 H 1.08995 * 109.47275 * 59.99987 * 1 2 3 32 32 H 1.08996 * 109.47361 * 305.00209 * 4 2 1 33 33 H 1.08998 * 109.46739 * 65.00146 * 4 2 1 34 34 H 1.08995 * 110.50719 * 237.29069 * 7 5 4 35 35 H 1.09002 * 110.50917 * 359.86206 * 7 5 4 36 36 H 1.09001 * 110.37137 * 142.81254 * 8 7 5 37 37 H 1.09007 * 110.37293 * 265.14783 * 8 7 5 38 38 H 1.08995 * 110.37516 * 281.67953 * 10 9 8 39 39 H 1.08997 * 110.37083 * 159.33935 * 10 9 8 40 40 H 0.96996 * 120.00118 * 273.78984 * 11 2 1 41 41 H 1.08008 * 119.87698 * 0.02562 * 16 15 12 42 42 H 1.08007 * 119.75207 * 179.72034 * 17 16 15 43 43 H 1.07995 * 119.87984 * 180.25415 * 18 17 16 44 44 H 1.08004 * 120.12847 * 179.97438 * 19 18 17 45 45 H 0.96996 * 119.99474 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3137 6 1 3.8772 0.4270 1.2227 7 6 4.0958 -1.2249 2.6295 8 6 5.0046 -2.3843 2.1646 9 8 5.4013 -2.0270 0.8227 10 6 4.2156 -1.4756 0.2095 11 7 2.0183 -0.6906 -1.1961 12 16 2.3836 0.1741 -2.5603 13 8 1.3034 1.0741 -2.7663 14 8 2.8040 -0.7714 -3.5343 15 6 3.7925 1.1648 -2.1882 16 6 3.6299 2.4459 -1.7119 17 6 4.7364 3.2295 -1.4242 18 6 6.0178 2.7301 -1.6013 19 6 6.2040 1.4503 -2.0709 20 6 5.0880 0.6475 -2.3717 21 6 5.2672 -0.6693 -2.8545 22 1 4.5678 -1.4450 -2.5799 23 6 6.3510 -0.9675 -3.6883 24 7 7.1697 -0.0178 -4.0616 25 14 6.6285 -2.7214 -4.2681 26 1 5.5705 -3.6008 -3.7090 27 1 6.5773 -2.7663 -5.7515 28 1 7.9585 -3.1915 -3.8041 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6054 -0.2617 2.1370 33 1 1.7516 -1.7715 1.2056 34 1 4.6727 -0.4876 3.1878 35 1 3.2717 -1.6019 3.2352 36 1 5.8790 -2.4634 2.8105 37 1 4.4497 -3.3226 2.1591 38 1 3.5399 -2.2744 -0.0959 39 1 4.4841 -0.8566 -0.6466 40 1 2.1276 -1.6544 -1.1891 41 1 2.6364 2.8436 -1.5659 42 1 4.5995 4.2353 -1.0551 43 1 6.8728 3.3481 -1.3701 44 1 7.2030 1.0634 -2.2085 45 1 7.9206 -0.2245 -4.6397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601369270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:05 Heat of formation + Delta-G solvation = -129.983219 kcal Electronic energy + Delta-G solvation = -29974.323961 eV Core-core repulsion = 26082.237799 eV Total energy + Delta-G solvation = -3892.086161 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.51153 -39.35864 -38.16293 -37.59407 -36.57994 -35.56271 -33.62107 -32.04972 -31.33464 -31.01238 -30.09658 -27.30340 -26.70942 -23.73277 -23.39477 -22.95348 -22.23715 -21.26140 -20.25785 -19.46588 -18.56836 -17.70400 -17.55954 -17.04648 -16.75976 -16.48929 -16.05987 -15.99884 -15.87637 -15.05106 -14.93436 -14.61679 -14.43448 -14.36194 -14.25554 -13.91868 -13.55111 -13.24723 -13.14793 -12.99559 -12.92159 -12.82927 -12.79831 -12.77583 -12.51974 -12.30968 -12.24891 -12.10094 -12.04756 -11.64221 -11.51704 -11.47376 -11.31896 -11.16937 -10.91345 -10.58254 -10.22478 -9.79088 -9.28734 -8.70432 -6.50696 -0.13076 0.54730 0.99640 1.34749 1.47121 1.50748 2.19426 2.43696 2.72264 3.04006 3.25200 3.54525 3.62139 3.79329 3.86933 4.07830 4.15721 4.29141 4.33038 4.36861 4.43893 4.46618 4.53380 4.63185 4.74462 4.80616 4.86364 4.94086 5.00881 5.03017 5.04136 5.08216 5.17171 5.20901 5.26256 5.34264 5.41066 5.48229 5.52213 5.57472 5.73392 5.91744 6.03939 6.08491 6.14804 6.28180 6.55730 6.78568 6.88090 8.24767 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009393 B = 0.006764 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.125467 B = 4138.299000 C = 4896.230509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.143 3.857 3 H 0.075 0.925 4 C -0.103 4.103 5 C -0.119 4.119 6 H 0.065 0.935 7 C -0.141 4.141 8 C 0.031 3.969 9 O -0.408 6.408 10 C 0.029 3.971 11 N -1.110 6.110 12 S 2.706 3.294 13 O -1.008 7.008 14 O -0.990 6.990 15 C -0.782 4.782 16 C -0.013 4.013 17 C -0.244 4.244 18 C -0.078 4.078 19 C -0.178 4.178 20 C 0.167 3.833 21 C -0.451 4.451 22 H 0.095 0.905 23 C 0.035 3.965 24 N -0.821 5.821 25 Si 0.968 3.032 26 H -0.255 1.255 27 H -0.269 1.269 28 H -0.259 1.259 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.418 0.582 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.117 0.883 44 H 0.108 0.892 45 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.663 -3.360 13.824 16.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.037 3.963 3 H 0.093 0.907 4 C -0.141 4.141 5 C -0.138 4.138 6 H 0.084 0.916 7 C -0.178 4.178 8 C -0.045 4.045 9 O -0.328 6.328 10 C -0.047 4.047 11 N -0.871 5.871 12 S 2.802 3.198 13 O -0.998 6.998 14 O -0.981 6.981 15 C -0.876 4.876 16 C -0.032 4.032 17 C -0.264 4.264 18 C -0.097 4.097 19 C -0.198 4.198 20 C 0.162 3.838 21 C -0.480 4.480 22 H 0.113 0.887 23 C -0.180 4.180 24 N -0.447 5.447 25 Si 0.789 3.211 26 H -0.178 1.178 27 H -0.193 1.193 28 H -0.184 1.184 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.066 0.934 32 H 0.127 0.873 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.124 0.876 36 H 0.111 0.889 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.255 0.745 41 H 0.141 0.859 42 H 0.145 0.855 43 H 0.135 0.865 44 H 0.126 0.874 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.763 -3.212 12.785 15.298 hybrid contribution 1.160 -0.446 -0.423 1.313 sum -6.603 -3.658 12.363 14.485 Atomic orbital electron populations 1.22306 0.93889 1.03401 1.03064 1.20988 0.94957 0.96006 0.84337 0.90733 1.21945 0.92524 1.02345 0.97304 1.22522 0.96792 0.99863 0.94629 0.91615 1.22981 1.00243 0.97736 0.96878 1.23641 0.99442 0.97837 0.83623 1.89179 1.34152 1.82312 1.27143 1.24092 0.86458 0.96461 0.97674 1.55707 1.82445 1.19382 1.29582 1.00818 0.73040 0.73043 0.72883 1.93432 1.54217 1.66803 1.85335 1.93541 1.83137 1.62461 1.58920 1.30216 1.14653 1.10458 1.32248 1.20517 0.98558 0.91744 0.92403 1.20877 0.92292 1.00791 1.12405 1.21232 0.97252 0.95039 0.96192 1.21578 0.99092 0.95577 1.03595 1.17213 0.89710 0.92476 0.84365 1.20163 1.08375 0.95539 1.23910 0.88709 1.26666 0.93599 1.02938 0.94840 1.69811 1.12526 1.35329 1.26986 0.85341 0.79372 0.77699 0.78694 1.17821 1.19342 1.18382 0.90886 0.89165 0.93444 0.87268 0.89372 0.90823 0.87553 0.88858 0.91285 0.91981 0.89261 0.74529 0.85863 0.85522 0.86463 0.87424 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.45 9.52 71.98 0.69 -2.76 16 2 C 0.14 3.50 2.75 44.99 0.12 3.62 16 3 H 0.07 1.99 7.65 -2.39 -0.02 1.97 16 4 C -0.10 -1.90 4.16 30.60 0.13 -1.77 16 5 C -0.12 -3.01 3.11 -9.77 -0.03 -3.04 16 6 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 7 C -0.14 -2.81 6.74 31.61 0.21 -2.60 16 8 C 0.03 0.75 7.63 72.48 0.55 1.30 16 9 O -0.41 -14.74 11.65 -148.98 -1.74 -16.48 16 10 C 0.03 0.98 5.51 72.49 0.40 1.38 16 11 N -1.11 -34.25 3.68 -169.39 -0.62 -34.88 16 12 S 2.71 114.20 5.34 -56.49 -0.30 113.90 16 13 O -1.01 -44.40 16.33 -128.00 -2.09 -46.49 16 14 O -0.99 -48.82 14.77 -128.00 -1.89 -50.71 16 15 C -0.78 -36.07 5.51 22.73 0.13 -35.94 16 16 C -0.01 -0.53 9.16 22.22 0.20 -0.33 16 17 C -0.24 -9.91 10.05 22.46 0.23 -9.68 16 18 C -0.08 -3.45 10.02 22.22 0.22 -3.22 16 19 C -0.18 -9.04 8.64 22.73 0.20 -8.85 16 20 C 0.17 8.56 4.28 -21.29 -0.09 8.47 16 21 C -0.45 -23.66 5.94 23.46 0.14 -23.52 16 22 H 0.10 4.82 5.60 -2.91 -0.02 4.81 16 23 C 0.04 1.81 5.35 85.26 0.46 2.27 16 24 N -0.82 -43.11 10.84 21.83 0.24 -42.87 16 25 Si 0.97 40.88 29.56 68.60 2.03 42.91 16 26 H -0.25 -10.65 7.11 99.48 0.71 -9.95 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 28 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 1.22 7.51 -2.39 -0.02 1.20 16 32 H 0.11 1.38 8.14 -2.39 -0.02 1.37 16 33 H 0.09 1.36 7.96 -2.39 -0.02 1.34 16 34 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.11 1.42 7.73 -2.39 -0.02 1.40 16 36 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.06 1.84 6.29 -2.39 -0.02 1.82 16 39 H 0.09 3.62 3.44 -2.39 -0.01 3.61 16 40 H 0.42 11.50 7.13 -96.75 -0.69 10.81 16 41 H 0.12 4.61 7.57 -2.91 -0.02 4.59 16 42 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 43 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 44 H 0.11 5.76 6.37 -2.91 -0.02 5.74 16 45 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 Total: -1.00 -69.00 360.51 -0.50 -69.50 By element: Atomic # 1 Polarization: 39.47 SS G_CDS: 0.32 Total: 39.80 kcal Atomic # 6 Polarization: -78.22 SS G_CDS: 3.55 Total: -74.68 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -0.39 Total: -77.75 kcal Atomic # 8 Polarization: -107.96 SS G_CDS: -5.72 Total: -113.67 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Atomic # 16 Polarization: 114.20 SS G_CDS: -0.30 Total: 113.90 kcal Total: -69.00 -0.50 -69.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601369270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.484 kcal (2) G-P(sol) polarization free energy of solvation -68.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds