Wall clock time and date at job start Tue Mar 31 2020 23:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46568 * 2 1 4 4 C 1.53000 * 109.46543 * 119.99305 * 2 1 3 5 5 C 1.52999 * 109.46709 * 185.00064 * 4 2 1 6 6 H 1.09001 * 110.80574 * 308.62705 * 5 4 2 7 7 C 1.54818 * 110.90783 * 185.00505 * 5 4 2 8 8 C 1.54097 * 104.18511 * 220.92544 * 7 5 4 9 9 O 1.43745 * 107.29627 * 357.96416 * 8 7 5 10 10 C 1.44375 * 106.97307 * 26.51710 * 9 8 7 11 11 N 1.46496 * 109.47289 * 239.99782 * 2 1 3 12 12 S 1.65598 * 120.00275 * 92.00569 * 11 2 1 13 13 O 1.42094 * 106.40344 * 178.53533 * 12 11 2 14 14 O 1.42106 * 106.40235 * 311.45423 * 12 11 2 15 15 C 1.76196 * 107.21887 * 64.99237 * 12 11 2 16 16 C 1.37638 * 120.13086 * 245.53424 * 15 12 11 17 17 C 1.38611 * 120.24904 * 179.97438 * 16 15 12 18 18 C 1.38654 * 120.50166 * 0.02562 * 17 16 15 19 19 C 1.37599 * 120.25090 * 359.97438 * 18 17 16 20 20 C 1.40703 * 120.12646 * 65.25522 * 15 12 11 21 21 C 1.41401 * 120.24265 * 359.97438 * 20 15 12 22 22 H 1.07996 * 119.99653 * 331.61580 * 21 20 15 23 23 C 1.39949 * 119.99912 * 151.61604 * 21 20 15 24 24 N 1.30823 * 119.99796 * 348.50811 * 23 21 20 25 25 Si 1.86800 * 119.99815 * 168.50581 * 23 21 20 26 26 H 1.48499 * 109.47181 * 60.00194 * 25 23 21 27 27 H 1.48499 * 109.46705 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47243 * 300.00229 * 25 23 21 29 29 H 1.08997 * 109.47391 * 300.00272 * 1 2 3 30 30 H 1.09009 * 109.46992 * 60.00528 * 1 2 3 31 31 H 1.08997 * 109.47215 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47723 * 305.00261 * 4 2 1 33 33 H 1.08999 * 109.46791 * 65.00659 * 4 2 1 34 34 H 1.09003 * 110.48128 * 339.59628 * 7 5 4 35 35 H 1.08997 * 110.48731 * 102.24254 * 7 5 4 36 36 H 1.08993 * 109.88335 * 117.39728 * 8 7 5 37 37 H 1.09006 * 109.87559 * 238.39558 * 8 7 5 38 38 H 1.08999 * 110.61604 * 201.43449 * 10 9 8 39 39 H 1.08999 * 110.61692 * 78.44311 * 10 9 8 40 40 H 0.97008 * 119.99831 * 272.28434 * 11 2 1 41 41 H 1.08001 * 119.87283 * 0.02562 * 16 15 12 42 42 H 1.07998 * 119.75137 * 179.97438 * 17 16 15 43 43 H 1.08007 * 119.87566 * 179.97438 * 18 17 16 44 44 H 1.07998 * 120.12866 * 180.02562 * 19 18 17 45 45 H 0.97004 * 119.99955 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5647 -0.6132 1.3138 6 1 4.0153 -0.9272 0.3723 7 6 4.1274 -1.4374 2.4975 8 6 5.2322 -0.5413 3.0901 9 8 5.3056 0.6413 2.2764 10 6 4.0021 0.8269 1.6840 11 7 2.0184 -0.6906 -1.1961 12 16 2.3418 0.1685 -2.5743 13 8 2.8239 -0.7686 -3.5275 14 8 1.2118 0.9991 -2.8038 15 6 3.6871 1.2474 -2.2128 16 6 3.4998 2.6110 -2.2183 17 6 4.5563 3.4620 -1.9337 18 6 5.8119 2.9517 -1.6413 19 6 6.0222 1.5919 -1.6301 20 6 4.9555 0.7182 -1.9117 21 6 5.1581 -0.6811 -1.8968 22 1 4.3386 -1.3428 -1.6585 23 6 6.4206 -1.2085 -2.1909 24 7 7.3500 -0.4382 -2.6951 25 14 6.7787 -3.0124 -1.8633 26 1 5.8453 -3.8539 -2.6543 27 1 8.1769 -3.3191 -2.2586 28 1 6.5984 -3.2982 -0.4173 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6053 -0.2616 2.1370 33 1 1.7516 -1.7714 1.2057 34 1 3.3487 -1.6228 3.2374 35 1 4.5486 -2.3776 2.1415 36 1 4.9798 -0.2708 4.1154 37 1 6.1866 -1.0675 3.0701 38 1 4.0712 1.4485 0.7913 39 1 3.3116 1.2645 2.4050 40 1 2.1485 -1.6518 -1.1820 41 1 2.5259 3.0194 -2.4443 42 1 4.4005 4.5307 -1.9407 43 1 6.6281 3.6241 -1.4214 44 1 7.0009 1.1966 -1.4016 45 1 8.2250 -0.8038 -2.8993 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601369272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:09 Heat of formation + Delta-G solvation = -137.985777 kcal Electronic energy + Delta-G solvation = -30020.393121 eV Core-core repulsion = 26127.959943 eV Total energy + Delta-G solvation = -3892.433178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.40248 -39.32118 -38.11481 -37.64253 -36.60408 -35.62964 -33.63527 -32.02169 -31.33462 -31.05530 -30.00891 -27.31736 -26.80927 -23.71279 -23.39327 -22.91462 -22.12637 -21.15655 -20.30644 -19.46760 -18.51988 -17.84475 -17.40593 -17.07732 -16.93428 -16.54801 -16.06557 -15.98196 -15.67670 -15.04305 -14.98367 -14.82121 -14.44315 -14.27784 -14.17931 -13.76490 -13.54371 -13.43644 -13.22543 -12.96102 -12.90683 -12.82595 -12.74817 -12.72979 -12.48708 -12.33377 -12.29937 -12.17285 -12.15358 -11.69755 -11.63401 -11.32564 -11.27268 -11.11063 -11.02851 -10.48560 -10.18499 -9.78365 -9.36678 -8.75393 -6.54766 -0.09666 0.58824 1.02931 1.35102 1.45778 1.52818 2.15443 2.41893 2.68547 3.05061 3.15385 3.54231 3.66164 3.90284 3.93264 4.07117 4.17012 4.27780 4.30552 4.36445 4.44428 4.53404 4.57781 4.62245 4.75731 4.82476 4.88965 4.92963 4.98339 5.01683 5.02948 5.07174 5.13570 5.20007 5.26317 5.34238 5.48658 5.51296 5.56401 5.61931 5.75692 5.87979 6.06322 6.11496 6.12981 6.33682 6.53025 6.72489 6.90100 8.19990 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008233 B = 0.007695 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3400.272682 B = 3637.937453 C = 4530.220937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.146 3.854 3 H 0.069 0.931 4 C -0.100 4.100 5 C -0.134 4.134 6 H 0.082 0.918 7 C -0.143 4.143 8 C 0.039 3.961 9 O -0.408 6.408 10 C 0.053 3.947 11 N -1.104 6.104 12 S 2.716 3.284 13 O -1.005 7.005 14 O -1.008 7.008 15 C -0.790 4.790 16 C -0.016 4.016 17 C -0.250 4.250 18 C -0.081 4.081 19 C -0.176 4.176 20 C 0.178 3.822 21 C -0.461 4.461 22 H 0.095 0.905 23 C 0.040 3.960 24 N -0.809 5.809 25 Si 0.965 3.035 26 H -0.260 1.260 27 H -0.268 1.268 28 H -0.241 1.241 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.420 0.580 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.289 -3.831 12.429 14.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.040 3.960 3 H 0.087 0.913 4 C -0.139 4.139 5 C -0.153 4.153 6 H 0.101 0.899 7 C -0.180 4.180 8 C -0.038 4.038 9 O -0.327 6.327 10 C -0.023 4.023 11 N -0.864 5.864 12 S 2.812 3.188 13 O -0.995 6.995 14 O -0.998 6.998 15 C -0.884 4.884 16 C -0.036 4.036 17 C -0.270 4.270 18 C -0.099 4.099 19 C -0.195 4.195 20 C 0.173 3.827 21 C -0.490 4.490 22 H 0.112 0.888 23 C -0.178 4.178 24 N -0.434 5.434 25 Si 0.784 3.216 26 H -0.184 1.184 27 H -0.193 1.193 28 H -0.165 1.165 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.256 0.744 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.131 0.869 44 H 0.126 0.874 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.362 -3.600 11.510 14.129 hybrid contribution 1.304 -0.470 -0.091 1.389 sum -6.058 -4.070 11.419 13.552 Atomic orbital electron populations 1.22329 0.93936 1.03466 1.03021 1.20916 0.94773 0.95803 0.84521 0.91321 1.21830 0.92526 1.02543 0.96963 1.22905 0.97442 0.94754 1.00185 0.89948 1.22961 0.98552 0.98826 0.97680 1.23290 0.99906 0.85856 0.94730 1.88873 1.32778 1.45717 1.65380 1.23634 0.84133 0.97578 0.96973 1.55406 1.82668 1.19685 1.28682 1.00478 0.72844 0.72800 0.72705 1.93486 1.82243 1.63406 1.60375 1.93424 1.51186 1.70052 1.85158 1.30133 1.16036 1.08224 1.33996 1.20514 0.98286 0.91855 0.92910 1.20803 0.93599 0.98816 1.13743 1.21178 0.96721 0.95276 0.96763 1.21505 0.99723 0.92960 1.05360 1.17113 0.89286 0.93275 0.82993 1.20000 0.97046 0.91945 1.39966 0.88753 1.26755 0.94940 1.04915 0.91214 1.69830 1.05211 1.39827 1.28489 0.85484 0.78539 0.76554 0.80985 1.18385 1.19272 1.16459 0.89339 0.93365 0.90736 0.87938 0.88837 0.87892 0.90772 0.90914 0.90792 0.91724 0.90708 0.74440 0.86212 0.86003 0.86940 0.87414 0.89692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.66 9.51 71.98 0.68 -2.97 16 2 C 0.15 3.78 2.71 44.99 0.12 3.90 16 3 H 0.07 2.00 7.24 -2.39 -0.02 1.98 16 4 C -0.10 -1.99 4.19 30.59 0.13 -1.86 16 5 C -0.13 -3.61 3.04 -9.49 -0.03 -3.64 16 6 H 0.08 2.79 5.62 -2.39 -0.01 2.78 16 7 C -0.14 -3.12 6.60 31.59 0.21 -2.91 16 8 C 0.04 0.99 7.70 72.35 0.56 1.55 16 9 O -0.41 -14.32 11.52 -148.98 -1.72 -16.04 16 10 C 0.05 1.65 6.57 72.66 0.48 2.13 16 11 N -1.10 -35.04 4.01 -169.39 -0.68 -35.72 16 12 S 2.72 115.68 4.89 -56.49 -0.28 115.41 16 13 O -1.00 -50.11 16.54 -128.00 -2.12 -52.23 16 14 O -1.01 -44.29 15.91 -128.00 -2.04 -46.32 16 15 C -0.79 -36.89 5.77 22.73 0.13 -36.75 16 16 C -0.02 -0.71 9.53 22.22 0.21 -0.49 16 17 C -0.25 -10.63 10.05 22.46 0.23 -10.40 16 18 C -0.08 -3.64 10.02 22.22 0.22 -3.42 16 19 C -0.18 -8.85 8.67 22.73 0.20 -8.65 16 20 C 0.18 8.90 5.55 -21.29 -0.12 8.78 16 21 C -0.46 -22.64 6.50 23.46 0.15 -22.48 16 22 H 0.09 4.25 5.05 -2.91 -0.01 4.24 16 23 C 0.04 1.90 5.24 85.26 0.45 2.35 16 24 N -0.81 -40.86 10.84 21.83 0.24 -40.62 16 25 Si 0.96 36.36 29.58 68.60 2.03 38.39 16 26 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 27 H -0.27 -9.72 7.11 99.48 0.71 -9.02 16 28 H -0.24 -8.30 7.11 99.48 0.71 -7.59 16 29 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.30 7.32 -2.38 -0.02 1.28 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.10 1.49 7.98 -2.39 -0.02 1.47 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.10 1.57 7.86 -2.39 -0.02 1.55 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.06 2.45 8.05 -2.39 -0.02 2.43 16 39 H 0.07 1.88 7.93 -2.39 -0.02 1.86 16 40 H 0.42 11.66 8.57 -96.74 -0.83 10.83 16 41 H 0.12 4.87 7.32 -2.91 -0.02 4.85 16 42 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 43 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 44 H 0.11 5.71 6.20 -2.91 -0.02 5.69 16 45 H 0.29 13.42 8.30 -92.71 -0.77 12.65 16 Total: -1.00 -67.35 368.67 -0.76 -68.11 By element: Atomic # 1 Polarization: 43.73 SS G_CDS: 0.18 Total: 43.91 kcal Atomic # 6 Polarization: -78.50 SS G_CDS: 3.62 Total: -74.88 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -0.44 Total: -76.34 kcal Atomic # 8 Polarization: -108.72 SS G_CDS: -5.87 Total: -114.59 kcal Atomic # 14 Polarization: 36.36 SS G_CDS: 2.03 Total: 38.39 kcal Atomic # 16 Polarization: 115.68 SS G_CDS: -0.28 Total: 115.41 kcal Total: -67.35 -0.76 -68.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601369272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.874 kcal (2) G-P(sol) polarization free energy of solvation -67.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds