Wall clock time and date at job start Tue Mar 31 2020 23:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.68121 * 2 1 4 4 N 1.47151 * 109.68443 * 120.52159 * 2 1 3 5 5 S 1.65605 * 120.98372 * 249.16456 * 4 2 1 6 6 O 1.42095 * 106.39930 * 335.99979 * 5 4 2 7 7 O 1.42095 * 106.40232 * 203.07207 * 5 4 2 8 8 C 1.76206 * 107.21438 * 89.53535 * 5 4 2 9 9 C 1.37642 * 120.12653 * 112.50848 * 8 5 4 10 10 C 1.38609 * 120.24635 * 180.29782 * 9 8 5 11 11 C 1.38656 * 120.50048 * 359.43814 * 10 9 8 12 12 C 1.37593 * 120.25128 * 0.27903 * 11 10 9 13 13 C 1.40698 * 120.12607 * 292.24361 * 8 5 4 14 14 C 1.41394 * 120.24810 * 359.96576 * 13 8 5 15 15 H 1.08002 * 119.99267 * 330.28615 * 14 13 8 16 16 C 1.39941 * 120.00227 * 150.28722 * 14 13 8 17 17 N 1.30825 * 119.99855 * 161.43828 * 16 14 13 18 18 Si 1.86802 * 120.00217 * 341.44252 * 16 14 13 19 19 H 1.48499 * 109.47115 * 95.12444 * 18 16 14 20 20 H 1.48499 * 109.47084 * 215.13015 * 18 16 14 21 21 H 1.48504 * 109.46743 * 335.12330 * 18 16 14 22 22 C 1.47150 * 118.03811 * 69.43376 * 4 2 1 23 23 C 1.52889 * 108.60605 * 50.23013 * 22 4 2 24 24 O 1.42960 * 109.29410 * 307.93843 * 23 22 4 25 25 C 1.42962 * 114.16917 * 62.44752 * 24 23 22 26 26 C 1.53003 * 109.51150 * 177.49060 * 25 24 23 27 27 C 1.53001 * 109.51304 * 57.34174 * 25 24 23 28 28 H 1.09000 * 109.46832 * 292.51982 * 1 2 3 29 29 H 1.08997 * 109.47032 * 52.51819 * 1 2 3 30 30 H 1.08993 * 109.47219 * 172.52057 * 1 2 3 31 31 H 1.08000 * 119.87603 * 0.02562 * 9 8 5 32 32 H 1.07999 * 119.74860 * 179.71441 * 10 9 8 33 33 H 1.08002 * 119.87341 * 180.25515 * 11 10 9 34 34 H 1.07999 * 120.12949 * 179.97438 * 12 11 10 35 35 H 0.97003 * 119.99598 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.68465 * 170.00813 * 22 4 2 37 37 H 1.09005 * 109.68337 * 290.56921 * 22 4 2 38 38 H 1.08995 * 109.58061 * 187.92120 * 23 22 4 39 39 H 1.09002 * 109.40254 * 67.83904 * 23 22 4 40 40 H 1.08998 * 109.47142 * 179.74699 * 26 25 24 41 41 H 1.08999 * 109.47310 * 299.74968 * 26 25 24 42 42 H 1.09001 * 109.47074 * 59.75076 * 26 25 24 43 43 H 1.08995 * 109.47358 * 300.25496 * 27 25 24 44 44 H 1.09003 * 109.47375 * 60.25237 * 27 25 24 45 45 H 1.09000 * 109.47231 * 180.24878 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 7 2.0256 -0.7037 1.1935 5 16 2.7883 0.1181 2.4124 6 8 3.3160 1.3016 1.8293 7 8 3.5891 -0.8342 3.0986 8 6 1.5457 0.6352 3.5498 9 6 1.4980 0.0934 4.8142 10 6 0.5179 0.4938 5.7088 11 6 -0.4172 1.4512 5.3462 12 6 -0.3851 2.0105 4.0895 13 6 0.6020 1.6075 3.1708 14 6 0.6451 2.1756 1.8768 15 1 1.5881 2.2669 1.3583 16 6 -0.5341 2.6196 1.2678 17 7 -0.4768 3.4554 0.2630 18 14 -2.1899 2.0190 1.8898 19 1 -2.7416 3.0016 2.8569 20 1 -3.1249 1.8721 0.7455 21 1 -2.0195 0.7055 2.5615 22 6 1.8290 -2.1600 1.2694 23 6 2.3259 -2.7878 -0.0331 24 8 1.7167 -2.1211 -1.1413 25 6 2.0463 -0.7337 -1.2430 26 6 1.3918 -0.1433 -2.4936 27 6 3.5651 -0.5747 -1.3363 28 1 -0.3633 0.3936 0.9493 29 1 -0.3633 0.6253 -0.8155 30 1 -0.3633 -1.0188 -0.1338 31 1 2.2243 -0.6497 5.1088 32 1 0.4851 0.0601 6.6973 33 1 -1.1740 1.7587 6.0527 34 1 -1.1147 2.7557 3.8089 35 1 -1.2941 3.7629 -0.1593 36 1 2.3946 -2.5636 2.1092 37 1 0.7696 -2.3812 1.3993 38 1 2.0609 -3.8448 -0.0535 39 1 3.4091 -2.6826 -0.0956 40 1 1.6398 0.9154 -2.5680 41 1 1.7593 -0.6656 -3.3770 42 1 0.3100 -0.2593 -2.4268 43 1 4.0301 -0.9977 -0.4459 44 1 3.9315 -1.0967 -2.2203 45 1 3.8158 0.4835 -1.4093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601371442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:37 Heat of formation + Delta-G solvation = -90.524966 kcal Electronic energy + Delta-G solvation = -30745.009513 eV Core-core repulsion = 26854.634390 eV Total energy + Delta-G solvation = -3890.375123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.80279 -37.93017 -36.51534 -35.01082 -34.76134 -33.93856 -33.60302 -30.79112 -30.13647 -29.56399 -27.89413 -26.95393 -25.42757 -23.12162 -22.73013 -21.98940 -21.19357 -19.13998 -18.17134 -17.71099 -17.40754 -16.50806 -16.27062 -15.45910 -15.25996 -14.96287 -14.80623 -14.34040 -14.21932 -13.72862 -13.61640 -13.46748 -13.12142 -12.96684 -12.58014 -12.44482 -12.05941 -12.01188 -11.88857 -11.73760 -11.59721 -11.50438 -11.35871 -11.33877 -11.27670 -11.13660 -10.89796 -10.80917 -10.64470 -10.51455 -10.26718 -10.05759 -9.86392 -9.64988 -9.41306 -9.27653 -8.35544 -8.15251 -7.87889 -7.27831 -4.90663 1.35149 2.04852 2.49117 2.88635 2.97619 3.07636 3.66718 3.70767 3.98007 4.17410 4.61738 4.92911 5.01387 5.06336 5.19581 5.23842 5.38045 5.41687 5.57563 5.66739 5.80054 5.81930 5.86269 5.90868 5.96391 5.99987 6.01163 6.14667 6.16845 6.18305 6.24909 6.34782 6.37061 6.47060 6.48680 6.58083 6.84926 6.91596 7.02180 7.06461 7.12139 7.27491 7.40512 7.49719 7.53502 7.79651 8.08375 8.28504 8.47087 9.68411 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012002 B = 0.007545 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.295678 B = 3710.220294 C = 4979.849913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.139 3.861 3 H 0.120 0.880 4 N -0.992 5.992 5 S 2.702 3.298 6 O -0.964 6.964 7 O -0.994 6.994 8 C -0.772 4.772 9 C 0.017 3.983 10 C -0.260 4.260 11 C -0.044 4.044 12 C -0.235 4.235 13 C 0.162 3.838 14 C -0.457 4.457 15 H 0.134 0.866 16 C 0.098 3.902 17 N -0.768 5.768 18 Si 0.897 3.103 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.240 1.240 22 C 0.086 3.914 23 C 0.050 3.950 24 O -0.371 6.371 25 C 0.106 3.894 26 C -0.136 4.136 27 C -0.178 4.178 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.292 0.708 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.146 -7.535 -3.460 8.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.034 3.966 3 H 0.137 0.863 4 N -0.828 5.828 5 S 2.801 3.199 6 O -0.954 6.954 7 O -0.985 6.985 8 C -0.866 4.866 9 C -0.002 4.002 10 C -0.280 4.280 11 C -0.063 4.063 12 C -0.255 4.255 13 C 0.157 3.843 14 C -0.484 4.484 15 H 0.151 0.849 16 C -0.127 4.127 17 N -0.389 5.389 18 Si 0.722 3.278 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.163 1.163 22 C -0.040 4.040 23 C -0.028 4.028 24 O -0.290 6.290 25 C 0.066 3.934 26 C -0.194 4.194 27 C -0.235 4.235 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.130 0.870 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.609 -7.305 -3.809 8.261 hybrid contribution -1.506 0.153 0.920 1.772 sum -0.898 -7.152 -2.889 7.765 Atomic orbital electron populations 1.22346 0.94946 1.00993 1.04009 1.21607 0.95379 0.96989 0.82671 0.86256 1.57878 1.76662 1.14935 1.33326 1.01105 0.73697 0.72558 0.72525 1.93493 1.77713 1.46911 1.77292 1.93430 1.67379 1.63203 1.74497 1.29894 1.27313 1.17150 1.12277 1.20375 0.94386 0.93818 0.91668 1.20486 1.01286 1.06380 0.99897 1.20833 0.95976 0.94075 0.95393 1.21220 1.03963 1.05253 0.95043 1.17045 0.88359 0.86439 0.92442 1.20456 0.98120 1.30353 0.99426 0.84891 1.26197 1.01552 0.91213 0.93742 1.69685 1.32424 1.19276 1.17469 0.86624 0.80219 0.82301 0.78646 1.19522 1.20829 1.16260 1.21898 1.02314 0.80580 0.99228 1.22793 0.97550 0.96352 0.86103 1.87917 1.71717 1.21969 1.47402 1.21851 0.94027 0.82000 0.95565 1.21790 1.01628 1.00787 0.95204 1.22398 0.95930 1.03267 1.01951 0.89799 0.91991 0.93188 0.87014 0.88167 0.88347 0.87682 0.89692 0.88558 0.91018 0.88397 0.92639 0.90589 0.92207 0.91286 0.92311 0.92078 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 6.73 37.16 0.25 -2.78 16 2 C 0.14 2.55 1.34 -67.43 -0.09 2.45 16 3 H 0.12 2.46 5.27 -51.93 -0.27 2.18 16 4 N -0.99 -18.33 2.56 -106.26 -0.27 -18.60 16 5 S 2.70 58.14 5.23 -107.50 -0.56 57.57 16 6 O -0.96 -23.08 14.35 -57.17 -0.82 -23.90 16 7 O -0.99 -21.74 15.57 -57.17 -0.89 -22.63 16 8 C -0.77 -17.66 5.97 -38.87 -0.23 -17.90 16 9 C 0.02 0.37 9.53 -39.66 -0.38 -0.01 16 10 C -0.26 -5.28 10.05 -39.29 -0.39 -5.68 16 11 C -0.04 -0.91 10.02 -39.66 -0.40 -1.31 16 12 C -0.24 -5.38 7.20 -38.87 -0.28 -5.66 16 13 C 0.16 3.89 4.95 -106.82 -0.53 3.36 16 14 C -0.46 -11.04 5.59 -37.74 -0.21 -11.25 16 15 H 0.13 3.43 4.10 -52.49 -0.22 3.21 16 16 C 0.10 2.23 3.95 -17.34 -0.07 2.16 16 17 N -0.77 -17.54 13.93 55.55 0.77 -16.77 16 18 Si 0.90 18.61 22.42 -169.99 -3.81 14.80 16 19 H -0.27 -5.52 6.69 56.52 0.38 -5.14 16 20 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.24 -5.12 6.89 56.52 0.39 -4.73 16 22 C 0.09 1.32 6.34 -3.74 -0.02 1.30 16 23 C 0.05 0.68 6.58 37.10 0.24 0.92 16 24 O -0.37 -5.67 9.75 -35.23 -0.34 -6.01 16 25 C 0.11 1.66 0.81 -90.47 -0.07 1.59 16 26 C -0.14 -1.89 8.31 37.16 0.31 -1.58 16 27 C -0.18 -2.64 8.10 37.16 0.30 -2.33 16 28 H 0.08 1.71 2.97 -51.93 -0.15 1.56 16 29 H 0.06 1.10 6.86 -51.93 -0.36 0.74 16 30 H 0.05 0.85 7.43 -51.93 -0.39 0.46 16 31 H 0.11 2.19 7.32 -52.49 -0.38 1.80 16 32 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 34 H 0.11 2.34 4.73 -52.49 -0.25 2.10 16 35 H 0.29 6.01 8.30 -40.82 -0.34 5.67 16 36 H 0.10 1.41 6.93 -51.93 -0.36 1.05 16 37 H 0.07 1.05 7.90 -51.93 -0.41 0.64 16 38 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.73 6.25 -51.93 -0.32 0.41 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.96 6.54 -51.93 -0.34 0.62 16 43 H 0.06 0.90 6.11 -51.93 -0.32 0.58 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 337.50 15.07 5.09 5.09 Total: -1.00 -27.65 337.50 -8.31 -35.97 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -5.90 Total: 11.19 kcal Atomic # 6 Polarization: -35.14 SS G_CDS: -1.57 Total: -36.71 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.50 Total: -35.37 kcal Atomic # 8 Polarization: -50.48 SS G_CDS: -2.05 Total: -52.53 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -3.81 Total: 14.80 kcal Atomic # 16 Polarization: 58.14 SS G_CDS: -0.56 Total: 57.57 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.65 -8.31 -35.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601371442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.559 kcal (2) G-P(sol) polarization free energy of solvation -27.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds