Wall clock time and date at job start Tue Mar 31 2020 23:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.68121 * 2 1 4 4 N 1.47151 * 109.68443 * 120.52159 * 2 1 3 5 5 S 1.65605 * 120.98372 * 249.16456 * 4 2 1 6 6 O 1.42095 * 106.39930 * 335.99979 * 5 4 2 7 7 O 1.42095 * 106.40232 * 203.07207 * 5 4 2 8 8 C 1.76206 * 107.21438 * 89.53535 * 5 4 2 9 9 C 1.37642 * 120.12653 * 112.50848 * 8 5 4 10 10 C 1.38609 * 120.24635 * 180.29782 * 9 8 5 11 11 C 1.38656 * 120.50048 * 359.43814 * 10 9 8 12 12 C 1.37593 * 120.25128 * 0.27903 * 11 10 9 13 13 C 1.40698 * 120.12607 * 292.24361 * 8 5 4 14 14 C 1.41394 * 120.24810 * 359.96576 * 13 8 5 15 15 H 1.08002 * 119.99267 * 330.28615 * 14 13 8 16 16 C 1.39941 * 120.00227 * 150.28722 * 14 13 8 17 17 N 1.30825 * 119.99855 * 161.43828 * 16 14 13 18 18 Si 1.86802 * 120.00217 * 341.44252 * 16 14 13 19 19 H 1.48499 * 109.47115 * 95.12444 * 18 16 14 20 20 H 1.48499 * 109.47084 * 215.13015 * 18 16 14 21 21 H 1.48504 * 109.46743 * 335.12330 * 18 16 14 22 22 C 1.47150 * 118.03811 * 69.43376 * 4 2 1 23 23 C 1.52889 * 108.60605 * 50.23013 * 22 4 2 24 24 O 1.42960 * 109.29410 * 307.93843 * 23 22 4 25 25 C 1.42962 * 114.16917 * 62.44752 * 24 23 22 26 26 C 1.53003 * 109.51150 * 177.49060 * 25 24 23 27 27 C 1.53001 * 109.51304 * 57.34174 * 25 24 23 28 28 H 1.09000 * 109.46832 * 292.51982 * 1 2 3 29 29 H 1.08997 * 109.47032 * 52.51819 * 1 2 3 30 30 H 1.08993 * 109.47219 * 172.52057 * 1 2 3 31 31 H 1.08000 * 119.87603 * 0.02562 * 9 8 5 32 32 H 1.07999 * 119.74860 * 179.71441 * 10 9 8 33 33 H 1.08002 * 119.87341 * 180.25515 * 11 10 9 34 34 H 1.07999 * 120.12949 * 179.97438 * 12 11 10 35 35 H 0.97003 * 119.99598 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.68465 * 170.00813 * 22 4 2 37 37 H 1.09005 * 109.68337 * 290.56921 * 22 4 2 38 38 H 1.08995 * 109.58061 * 187.92120 * 23 22 4 39 39 H 1.09002 * 109.40254 * 67.83904 * 23 22 4 40 40 H 1.08998 * 109.47142 * 179.74699 * 26 25 24 41 41 H 1.08999 * 109.47310 * 299.74968 * 26 25 24 42 42 H 1.09001 * 109.47074 * 59.75076 * 26 25 24 43 43 H 1.08995 * 109.47358 * 300.25496 * 27 25 24 44 44 H 1.09003 * 109.47375 * 60.25237 * 27 25 24 45 45 H 1.09000 * 109.47231 * 180.24878 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 7 2.0256 -0.7037 1.1935 5 16 2.7883 0.1181 2.4124 6 8 3.3160 1.3016 1.8293 7 8 3.5891 -0.8342 3.0986 8 6 1.5457 0.6352 3.5498 9 6 1.4980 0.0934 4.8142 10 6 0.5179 0.4938 5.7088 11 6 -0.4172 1.4512 5.3462 12 6 -0.3851 2.0105 4.0895 13 6 0.6020 1.6075 3.1708 14 6 0.6451 2.1756 1.8768 15 1 1.5881 2.2669 1.3583 16 6 -0.5341 2.6196 1.2678 17 7 -0.4768 3.4554 0.2630 18 14 -2.1899 2.0190 1.8898 19 1 -2.7416 3.0016 2.8569 20 1 -3.1249 1.8721 0.7455 21 1 -2.0195 0.7055 2.5615 22 6 1.8290 -2.1600 1.2694 23 6 2.3259 -2.7878 -0.0331 24 8 1.7167 -2.1211 -1.1413 25 6 2.0463 -0.7337 -1.2430 26 6 1.3918 -0.1433 -2.4936 27 6 3.5651 -0.5747 -1.3363 28 1 -0.3633 0.3936 0.9493 29 1 -0.3633 0.6253 -0.8155 30 1 -0.3633 -1.0188 -0.1338 31 1 2.2243 -0.6497 5.1088 32 1 0.4851 0.0601 6.6973 33 1 -1.1740 1.7587 6.0527 34 1 -1.1147 2.7557 3.8089 35 1 -1.2941 3.7629 -0.1593 36 1 2.3946 -2.5636 2.1092 37 1 0.7696 -2.3812 1.3993 38 1 2.0609 -3.8448 -0.0535 39 1 3.4091 -2.6826 -0.0956 40 1 1.6398 0.9154 -2.5680 41 1 1.7593 -0.6656 -3.3770 42 1 0.3100 -0.2593 -2.4268 43 1 4.0301 -0.9977 -0.4459 44 1 3.9315 -1.0967 -2.2203 45 1 3.8158 0.4835 -1.4093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601371442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:36 Heat of formation + Delta-G solvation = -109.010448 kcal Electronic energy + Delta-G solvation = -30745.811103 eV Core-core repulsion = 26854.634390 eV Total energy + Delta-G solvation = -3891.176713 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.06402 -39.61209 -38.24978 -36.76200 -36.21588 -35.53280 -34.85252 -32.49320 -31.80876 -30.87618 -29.18600 -28.15029 -27.13535 -24.45689 -24.07324 -23.58371 -22.88988 -20.53732 -19.74394 -19.30977 -18.99764 -18.11931 -17.65841 -17.12150 -16.61143 -16.40174 -16.12906 -15.86474 -15.65739 -15.40086 -15.28016 -14.87938 -14.65024 -14.37933 -14.09062 -13.90922 -13.54603 -13.40808 -13.20001 -13.16868 -13.05482 -12.97203 -12.91948 -12.90511 -12.80824 -12.56115 -12.43146 -12.30577 -12.18590 -11.93576 -11.80635 -11.69257 -11.22115 -11.13042 -10.98997 -10.84585 -9.98945 -9.59997 -9.56068 -8.99957 -6.67627 -0.29315 0.34738 0.78717 1.21698 1.32664 1.41109 2.02091 2.13676 2.47708 2.83337 2.92348 3.31654 3.51975 3.71660 3.89615 4.03425 4.07341 4.18553 4.22684 4.29166 4.35276 4.45586 4.60158 4.61464 4.64837 4.68829 4.71732 4.78511 4.84304 4.90899 4.92768 4.96150 5.00292 5.08563 5.18561 5.22423 5.29054 5.39325 5.47837 5.54562 5.56174 5.69824 5.79191 5.84077 6.10108 6.29438 6.31646 6.55086 6.70798 8.01852 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012002 B = 0.007545 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.295678 B = 3710.220294 C = 4979.849913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.140 3.860 3 H 0.089 0.911 4 N -0.988 5.988 5 S 2.711 3.289 6 O -0.996 6.996 7 O -1.002 7.002 8 C -0.790 4.790 9 C 0.003 3.997 10 C -0.254 4.254 11 C -0.043 4.043 12 C -0.261 4.261 13 C 0.145 3.855 14 C -0.475 4.475 15 H 0.108 0.892 16 C 0.083 3.917 17 N -0.794 5.794 18 Si 0.932 3.068 19 H -0.265 1.265 20 H -0.266 1.266 21 H -0.250 1.250 22 C 0.076 3.924 23 C 0.049 3.951 24 O -0.373 6.373 25 C 0.109 3.891 26 C -0.135 4.135 27 C -0.178 4.178 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.127 0.873 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.105 0.895 35 H 0.302 0.698 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.135 0.865 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.049 0.951 44 H 0.085 0.915 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.121 -9.506 -3.075 10.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 H 0.107 0.893 4 N -0.826 5.826 5 S 2.810 3.190 6 O -0.987 6.987 7 O -0.992 6.992 8 C -0.884 4.884 9 C -0.017 4.017 10 C -0.274 4.274 11 C -0.061 4.061 12 C -0.281 4.281 13 C 0.141 3.859 14 C -0.501 4.501 15 H 0.125 0.875 16 C -0.140 4.140 17 N -0.416 5.416 18 Si 0.755 3.245 19 H -0.191 1.191 20 H -0.192 1.192 21 H -0.174 1.174 22 C -0.049 4.049 23 C -0.029 4.029 24 O -0.291 6.291 25 C 0.068 3.932 26 C -0.192 4.192 27 C -0.235 4.235 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.145 0.855 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.123 0.877 35 H 0.113 0.887 36 H 0.121 0.879 37 H 0.098 0.902 38 H 0.153 0.847 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.104 0.896 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.366 -9.270 -3.415 9.886 hybrid contribution -1.144 0.700 0.902 1.616 sum -1.509 -8.569 -2.513 9.057 Atomic orbital electron populations 1.22268 0.95073 1.01505 1.02913 1.21571 0.95245 0.96060 0.83737 0.89321 1.57641 1.76423 1.16199 1.32355 1.00646 0.73649 0.72045 0.72612 1.93450 1.78662 1.48704 1.77868 1.93403 1.67812 1.63067 1.74945 1.30169 1.27229 1.17432 1.13554 1.20715 0.95319 0.94274 0.91408 1.20951 1.00026 1.05376 1.01049 1.21266 0.96517 0.93271 0.95055 1.21373 1.04330 1.06249 0.96100 1.17248 0.89222 0.86812 0.92649 1.20293 0.97723 1.32177 0.99953 0.87489 1.26516 1.02925 0.90923 0.93602 1.69682 1.33573 1.20062 1.18262 0.86082 0.78213 0.81366 0.78796 1.19132 1.19157 1.17358 1.22230 1.03164 0.78578 1.00895 1.23005 0.97746 0.97777 0.84362 1.87919 1.71972 1.21341 1.47905 1.21824 0.94472 0.82203 0.94730 1.21790 1.01471 1.00765 0.95192 1.22399 0.95459 1.02992 1.02658 0.91752 0.91957 0.91887 0.85481 0.84608 0.84785 0.87723 0.88686 0.87909 0.90234 0.84747 0.92272 0.91000 0.90053 0.91409 0.93197 0.89630 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.87 6.73 71.98 0.48 -5.38 16 2 C 0.14 5.17 1.34 44.96 0.06 5.24 16 3 H 0.09 3.87 5.27 -2.39 -0.01 3.85 16 4 N -0.99 -36.58 2.56 -490.10 -1.25 -37.83 16 5 S 2.71 118.94 5.23 -56.49 -0.30 118.64 16 6 O -1.00 -50.04 14.35 -128.00 -1.84 -51.87 16 7 O -1.00 -43.74 15.57 -128.00 -1.99 -45.73 16 8 C -0.79 -36.38 5.97 22.73 0.14 -36.24 16 9 C 0.00 0.10 9.53 22.22 0.21 0.32 16 10 C -0.25 -9.62 10.05 22.46 0.23 -9.39 16 11 C -0.04 -1.67 10.02 22.22 0.22 -1.45 16 12 C -0.26 -11.79 7.20 22.73 0.16 -11.62 16 13 C 0.15 7.07 4.95 -21.29 -0.11 6.96 16 14 C -0.47 -23.74 5.59 23.46 0.13 -23.61 16 15 H 0.11 5.87 4.10 -2.91 -0.01 5.85 16 16 C 0.08 3.86 3.95 85.26 0.34 4.20 16 17 N -0.79 -37.16 13.93 21.83 0.30 -36.85 16 18 Si 0.93 37.89 22.42 68.60 1.54 39.43 16 19 H -0.27 -10.51 6.69 99.48 0.67 -9.85 16 20 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 21 H -0.25 -10.50 6.89 99.48 0.69 -9.81 16 22 C 0.08 2.24 6.34 86.22 0.55 2.78 16 23 C 0.05 1.20 6.58 71.95 0.47 1.67 16 24 O -0.37 -10.51 9.75 -148.98 -1.45 -11.97 16 25 C 0.11 3.31 0.81 -10.69 -0.01 3.30 16 26 C -0.13 -3.58 8.31 71.98 0.60 -2.99 16 27 C -0.18 -5.15 8.10 71.98 0.58 -4.56 16 28 H 0.06 2.65 2.97 -2.39 -0.01 2.64 16 29 H 0.06 2.23 6.86 -2.39 -0.02 2.22 16 30 H 0.06 2.08 7.43 -2.39 -0.02 2.06 16 31 H 0.13 4.78 7.32 -2.91 -0.02 4.76 16 32 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 33 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 34 H 0.11 4.63 4.73 -2.91 -0.01 4.62 16 35 H 0.30 12.58 8.30 -92.71 -0.77 11.82 16 36 H 0.10 2.86 6.93 -2.39 -0.02 2.84 16 37 H 0.08 2.20 7.90 -2.38 -0.02 2.18 16 38 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.06 1.43 6.25 -2.39 -0.01 1.41 16 40 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.07 1.81 6.54 -2.39 -0.02 1.79 16 43 H 0.05 1.51 6.11 -2.39 -0.01 1.49 16 44 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -60.12 337.50 0.03 -60.09 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: 0.96 Total: 36.87 kcal Atomic # 6 Polarization: -74.84 SS G_CDS: 4.06 Total: -70.78 kcal Atomic # 7 Polarization: -73.74 SS G_CDS: -0.95 Total: -74.69 kcal Atomic # 8 Polarization: -104.28 SS G_CDS: -5.28 Total: -109.57 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 1.54 Total: 39.43 kcal Atomic # 16 Polarization: 118.94 SS G_CDS: -0.30 Total: 118.64 kcal Total: -60.12 0.03 -60.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601371442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.923 kcal (2) G-P(sol) polarization free energy of solvation -60.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds