Wall clock time and date at job start Tue Mar 31 2020 23:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46592 * 2 1 4 4 N 1.46500 * 109.46904 * 119.99989 * 2 1 3 5 5 S 1.65596 * 119.99833 * 266.33454 * 4 2 1 6 6 O 1.42101 * 106.40033 * 177.98006 * 5 4 2 7 7 O 1.42104 * 106.40302 * 310.89412 * 5 4 2 8 8 C 1.76191 * 107.22003 * 64.43687 * 5 4 2 9 9 C 1.37642 * 120.12847 * 244.86871 * 8 5 4 10 10 C 1.38612 * 120.24821 * 180.02562 * 9 8 5 11 11 C 1.38656 * 120.50153 * 359.97438 * 10 9 8 12 12 C 1.37599 * 120.25003 * 0.02562 * 11 10 9 13 13 C 1.40704 * 120.12878 * 64.59581 * 8 5 4 14 14 C 1.41395 * 120.24118 * 359.97438 * 13 8 5 15 15 H 1.08002 * 120.00118 * 331.34997 * 14 13 8 16 16 C 1.39942 * 119.99802 * 151.34756 * 14 13 8 17 17 N 1.30822 * 120.00300 * 348.09675 * 16 14 13 18 18 Si 1.86804 * 120.00144 * 168.09714 * 16 14 13 19 19 H 1.48505 * 109.46963 * 59.99863 * 18 16 14 20 20 H 1.48492 * 109.47357 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46847 * 300.00187 * 18 16 14 22 22 C 1.52994 * 109.47162 * 240.00183 * 2 1 3 23 23 C 1.53172 * 109.54556 * 179.55232 * 22 2 1 24 24 C 1.53089 * 109.16831 * 183.15382 * 23 22 2 25 25 O 1.42902 * 109.41395 * 57.60531 * 24 23 22 26 26 C 1.42899 * 114.10194 * 298.84534 * 25 24 23 27 27 C 1.53091 * 109.41329 * 61.15462 * 26 25 24 28 28 H 1.09001 * 109.46592 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47059 * 60.00202 * 1 2 3 30 30 H 1.09001 * 109.47064 * 299.99745 * 1 2 3 31 31 H 0.96993 * 119.99797 * 86.34270 * 4 2 1 32 32 H 1.07996 * 119.87346 * 359.97438 * 9 8 5 33 33 H 1.07996 * 119.75405 * 179.97438 * 10 9 8 34 34 H 1.07999 * 119.88081 * 179.97438 * 11 10 9 35 35 H 1.08006 * 120.12649 * 179.97438 * 12 11 10 36 36 H 0.96999 * 120.00036 * 180.02562 * 17 16 14 37 37 H 1.09005 * 109.54655 * 299.82051 * 22 2 1 38 38 H 1.09001 * 109.52466 * 303.06276 * 23 22 2 39 39 H 1.09005 * 109.52249 * 63.24338 * 23 22 2 40 40 H 1.09001 * 109.48027 * 297.62780 * 24 23 22 41 41 H 1.08997 * 109.48347 * 177.59609 * 24 23 22 42 42 H 1.08997 * 109.48047 * 301.17600 * 26 25 24 43 43 H 1.08995 * 109.48257 * 181.13660 * 26 25 24 44 44 H 1.09003 * 109.52371 * 182.48583 * 27 26 25 45 45 H 1.09004 * 109.52183 * 62.30049 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 2.3807 0.1738 2.5613 6 8 2.7755 -0.7742 3.5435 7 8 3.2074 1.2523 2.1457 8 6 0.8787 0.8918 3.1381 9 6 0.7254 2.2596 3.1466 10 6 -0.4550 2.8271 3.6004 11 6 -1.4938 2.0262 4.0498 12 6 -1.3626 0.6564 4.0503 13 6 -0.1709 0.0690 3.5865 14 6 -0.0271 -1.3376 3.5765 15 1 0.6185 -1.8093 2.8504 16 6 -0.7213 -2.1186 4.5074 17 7 -1.3138 -1.5501 5.5258 18 14 -0.8019 -3.9728 4.2959 19 1 0.5733 -4.5331 4.3120 20 1 -1.5909 -4.5639 5.4064 21 1 -1.4527 -4.2954 3.0006 22 6 2.0401 -0.7212 -1.2492 23 6 3.5717 -0.7124 -1.2566 24 6 4.0719 -1.3659 -2.5475 25 8 3.5364 -0.6661 -3.6725 26 6 2.1093 -0.6814 -3.7439 27 6 1.5303 -0.0004 -2.5010 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 2.1295 -1.6541 1.1885 32 1 1.5281 2.8931 2.7992 33 1 -0.5666 3.9013 3.6039 34 1 -2.4090 2.4790 4.4015 35 1 -2.1729 0.0344 4.4012 36 1 -1.7947 -2.0914 6.1713 37 1 1.6800 -1.7500 -1.2489 38 1 3.9304 0.3157 -1.2061 39 1 3.9433 -1.2713 -0.3976 40 1 3.7470 -2.4059 -2.5780 41 1 5.1607 -1.3241 -2.5779 42 1 1.7587 -1.7124 -3.7901 43 1 1.7843 -0.1464 -4.6362 44 1 0.4419 -0.0501 -2.5322 45 1 1.8477 1.0421 -2.4757 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601372146.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:23 Heat of formation + Delta-G solvation = -121.750138 kcal Electronic energy + Delta-G solvation = -28981.033517 eV Core-core repulsion = 25089.304369 eV Total energy + Delta-G solvation = -3891.729148 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.62864 -37.64633 -36.67142 -36.13049 -34.83486 -33.91446 -32.54770 -31.25973 -30.24144 -29.60275 -28.97900 -25.55389 -25.22545 -23.45740 -21.69485 -21.45327 -21.10763 -20.16738 -18.61182 -17.72184 -16.94659 -16.53156 -16.05993 -15.83825 -15.51822 -15.41505 -14.89218 -14.45375 -14.29527 -14.07711 -13.52817 -13.33533 -13.23959 -13.15871 -12.81274 -12.77038 -12.51593 -11.98735 -11.61144 -11.55807 -11.43239 -11.34999 -11.29885 -11.16001 -11.09382 -11.06051 -11.01089 -10.78874 -10.58219 -10.55163 -10.46889 -10.26253 -9.92954 -9.63268 -9.45387 -9.40156 -8.76522 -8.03250 -7.61847 -7.04886 -4.77881 1.53729 2.32658 2.71990 2.93743 2.96156 3.10002 3.74673 3.80372 3.91188 4.39038 4.60684 4.71390 4.76205 4.81209 4.96235 5.14421 5.27179 5.31583 5.36868 5.47704 5.54929 5.57258 5.63292 5.69708 5.79010 5.87309 5.93646 6.03320 6.04277 6.10493 6.20750 6.23349 6.32266 6.39141 6.60020 6.74235 6.77132 6.93542 7.06911 7.11554 7.28850 7.47434 7.54590 7.66589 7.79470 7.87588 8.26901 8.48243 8.63284 9.88039 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012229 B = 0.004574 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.143903 B = 6119.704294 C = 6918.285813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.162 3.838 3 H 0.087 0.913 4 N -1.117 6.117 5 S 2.699 3.301 6 O -0.966 6.966 7 O -0.998 6.998 8 C -0.773 4.773 9 C -0.003 4.003 10 C -0.250 4.250 11 C -0.077 4.077 12 C -0.159 4.159 13 C 0.190 3.810 14 C -0.445 4.445 15 H 0.086 0.914 16 C 0.081 3.919 17 N -0.776 5.776 18 Si 0.913 3.087 19 H -0.257 1.257 20 H -0.275 1.275 21 H -0.260 1.260 22 C -0.091 4.091 23 C -0.153 4.153 24 C 0.061 3.939 25 O -0.386 6.386 26 C 0.062 3.938 27 C -0.152 4.152 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.409 0.591 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.124 0.876 36 H 0.288 0.712 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.048 0.952 41 H 0.091 0.909 42 H 0.048 0.952 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.322 -1.737 -12.653 12.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.054 3.946 3 H 0.105 0.895 4 N -0.872 5.872 5 S 2.796 3.204 6 O -0.957 6.957 7 O -0.989 6.989 8 C -0.868 4.868 9 C -0.023 4.023 10 C -0.270 4.270 11 C -0.096 4.096 12 C -0.178 4.178 13 C 0.185 3.815 14 C -0.473 4.473 15 H 0.104 0.896 16 C -0.140 4.140 17 N -0.400 5.400 18 Si 0.736 3.264 19 H -0.181 1.181 20 H -0.199 1.199 21 H -0.184 1.184 22 C -0.111 4.111 23 C -0.191 4.191 24 C -0.016 4.016 25 O -0.305 6.305 26 C -0.015 4.015 27 C -0.190 4.190 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.243 0.757 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.142 0.858 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.110 0.890 42 H 0.066 0.934 43 H 0.109 0.891 44 H 0.098 0.902 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.165 -1.441 -12.195 12.470 hybrid contribution -1.143 -1.123 0.458 1.667 sum 1.022 -2.564 -11.738 12.058 Atomic orbital electron populations 1.22414 0.95142 1.02954 1.02942 1.20632 0.94077 0.96103 0.83761 0.89503 1.55750 1.84297 1.19458 1.27702 1.01116 0.74431 0.72790 0.72039 1.93545 1.82549 1.62117 1.57466 1.93449 1.66649 1.55970 1.82797 1.29849 1.21026 1.02644 1.33264 1.20243 0.95934 0.92748 0.93391 1.20476 0.96215 0.97512 1.12808 1.20897 0.96936 0.94551 0.97176 1.21505 0.98601 0.93340 1.04391 1.16948 0.88480 0.91839 0.84218 1.19801 1.22536 0.91217 1.13772 0.89559 1.25934 0.92412 1.02194 0.93490 1.69770 1.23203 1.39053 1.07925 0.86260 0.80063 0.80855 0.79249 1.18101 1.19925 1.18444 1.21448 0.95335 1.00179 0.94124 1.22254 0.95710 1.02996 0.98133 1.22600 0.98757 0.94669 0.85527 1.87910 1.20411 1.76072 1.46124 1.22565 0.81086 0.99764 0.98071 1.22299 1.01405 1.00915 0.94417 0.92019 0.92256 0.90500 0.75740 0.87538 0.88822 0.88912 0.85823 0.90102 0.90498 0.90494 0.90453 0.93372 0.89036 0.93366 0.89073 0.90169 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 9.17 37.16 0.34 -2.19 16 2 C 0.16 2.33 2.48 -67.93 -0.17 2.16 16 3 H 0.09 1.33 7.53 -51.93 -0.39 0.94 16 4 N -1.12 -18.50 3.90 -4.89 -0.02 -18.52 16 5 S 2.70 57.63 4.94 -107.50 -0.53 57.10 16 6 O -0.97 -23.78 16.61 -57.17 -0.95 -24.73 16 7 O -1.00 -22.30 16.33 -57.17 -0.93 -23.23 16 8 C -0.77 -17.86 4.74 -38.87 -0.18 -18.04 16 9 C 0.00 -0.07 9.53 -39.66 -0.38 -0.45 16 10 C -0.25 -5.34 10.05 -39.29 -0.39 -5.73 16 11 C -0.08 -1.68 10.02 -39.66 -0.40 -2.08 16 12 C -0.16 -3.81 8.66 -38.87 -0.34 -4.14 16 13 C 0.19 4.64 5.09 -106.82 -0.54 4.10 16 14 C -0.44 -10.75 7.65 -37.74 -0.29 -11.04 16 15 H 0.09 1.93 5.74 -52.49 -0.30 1.63 16 16 C 0.08 1.90 5.23 -17.34 -0.09 1.81 16 17 N -0.78 -18.76 10.88 55.55 0.60 -18.16 16 18 Si 0.91 17.57 29.58 -169.99 -5.03 12.55 16 19 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 20 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 21 H -0.26 -4.79 7.11 56.52 0.40 -4.38 16 22 C -0.09 -1.05 1.96 -90.44 -0.18 -1.23 16 23 C -0.15 -1.82 5.22 -26.60 -0.14 -1.95 16 24 C 0.06 0.64 6.84 37.20 0.25 0.90 16 25 O -0.39 -4.57 10.76 -35.23 -0.38 -4.95 16 26 C 0.06 0.59 6.84 37.20 0.25 0.85 16 27 C -0.15 -1.54 4.97 -26.59 -0.13 -1.67 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.71 6.51 -51.93 -0.34 0.37 16 30 H 0.08 1.34 6.40 -51.93 -0.33 1.00 16 31 H 0.41 6.03 8.57 -34.47 -0.30 5.73 16 32 H 0.11 2.20 7.32 -52.49 -0.38 1.82 16 33 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.12 3.01 6.24 -52.48 -0.33 2.68 16 36 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 0.92 7.73 -51.93 -0.40 0.51 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 0.72 6.62 -51.93 -0.34 0.38 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 364.99 15.07 5.50 5.50 Total: -1.00 -30.00 364.99 -10.59 -40.59 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -6.48 Total: 12.56 kcal Atomic # 6 Polarization: -36.33 SS G_CDS: -2.38 Total: -38.71 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.59 Total: -36.68 kcal Atomic # 8 Polarization: -50.64 SS G_CDS: -2.26 Total: -52.90 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.55 kcal Atomic # 16 Polarization: 57.63 SS G_CDS: -0.53 Total: 57.10 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.00 -10.59 -40.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601372146.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.158 kcal (2) G-P(sol) polarization free energy of solvation -29.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds